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Aliases for HLA-W Gene

Aliases for HLA-W Gene

  • Major Histocompatibility Complex, Class I, W (Pseudogene) 2 3 5
  • HLA-80 Pseudogene 2 3
  • HLA-80 3

External Ids for HLA-W Gene

Previous HGNC Symbols for HLA-W Gene

  • HLA-80

Previous GeneCards Identifiers for HLA-W Gene

  • GC06P030032
  • GC06P030035
  • GC06P029923
  • GC06P029722
  • GC06P030097
  • GC06P030196
  • GC06P030346
  • GC06P030495
  • GC06P030697

Summaries for HLA-W Gene

GeneCards Summary for HLA-W Gene

HLA-W (Major Histocompatibility Complex, Class I, W (Pseudogene)) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HLA-W Gene

Genomics for HLA-W Gene

Regulatory Elements for HLA-W Gene

Enhancers for HLA-W Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G029963 2 FANTOM5 Ensembl ENCODE dbSUPER 31.1 +10.4 10416 4.8 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 HLA-A HLA-K HLA-W HLA-H HLA-J HCG4P5 MICD HCG4 IFITM4P HLA-F
GH06G029940 1.3 ENCODE dbSUPER 42.2 -13.6 -13574 3.7 HDGF PKNOX1 FOXA2 WRNIP1 ZFP64 ARID4B DMAP1 ZNF2 YY1 ZNF143 HLA-J HLA-T HLA-G HLA-H HLA-W HLA-K HLA-A HCG4P3 ZFP57 HLA-U
GH06G029848 0.9 ENCODE 50.6 -107.6 -107616 0.2 ELF3 RB1 ZFP64 WRNIP1 ARID4B KLF17 ZNF2 ZNF48 ZSCAN9 RAD21 HLA-W HLA-H TRIM31-AS1 TRIM31 HLA-F MICF HCGVIII-2
GH06G029850 0.6 Ensembl 50.6 -105.5 -105534 0.2 PKNOX1 JUND ATF1 ATF3 ZNF24 CREM ATF2 EZH2 HLA-W HLA-H HLA-A ZFP57 HCG4P7 TRIM31-AS1 TRIM31 MICF HCGVIII-2
GH06G030746 2.1 FANTOM5 Ensembl ENCODE dbSUPER 12.2 +795.6 795594 9.5 CREB3L1 MLX AGO1 ZFP64 DMAP1 FEZF1 YY1 SLC30A9 ZNF143 ZNF548 IER3 DHX16 LY6G5B GTF2H4 DDX39B PPP1R10 PAIP1P1 ABCF1 HLA-K VARS2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HLA-W on UCSC Golden Path with GeneCards custom track

Genomic Location for HLA-W Gene

Chromosome:
6
Start:
29,955,834 bp from pter
End:
29,959,058 bp from pter
Size:
3,225 bases
Orientation:
Plus strand

Genomic View for HLA-W Gene

Genes around HLA-W on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HLA-W Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HLA-W Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HLA-W Gene

Post-translational modifications for HLA-W Gene

No Post-translational modifications

No data available for DME Specific Peptides for HLA-W Gene

Domains & Families for HLA-W Gene

Gene Families for HLA-W Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HLA-W: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HLA-W Gene

Function for HLA-W Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HLA-W Gene

Localization for HLA-W Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HLA-W Gene

Pathways & Interactions for HLA-W Gene

SuperPathways for HLA-W Gene

No Data Available

Interacting Proteins for HLA-W Gene

Gene Ontology (GO) - Biological Process for HLA-W Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HLA-W Gene

Drugs & Compounds for HLA-W Gene

No Compound Related Data Available

Transcripts for HLA-W Gene

mRNA/cDNA for HLA-W Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HLA-W Gene

No ASD Table

Relevant External Links for HLA-W Gene

GeneLoc Exon Structure for
HLA-W
ECgene alternative splicing isoforms for
HLA-W

Expression for HLA-W Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HLA-W Gene

mRNA differential expression in normal tissues according to GTEx for HLA-W Gene

This gene is overexpressed in Whole Blood (x10.0).
genes like me logo Genes that share expression patterns with HLA-W: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HLA-W Gene

Orthologs for HLA-W Gene

Evolution for HLA-W Gene

ENSEMBL:
Gene Tree for HLA-W (if available)
TreeFam:
Gene Tree for HLA-W (if available)

No data available for Orthologs for HLA-W Gene

Paralogs for HLA-W Gene

No data available for Paralogs for HLA-W Gene

Variants for HLA-W Gene

Relevant External Links for HLA-W Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HLA-W

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HLA-W Gene

Disorders for HLA-W Gene

Relevant External Links for HLA-W

Genetic Association Database (GAD)
HLA-W
Human Genome Epidemiology (HuGE) Navigator
HLA-W

No disorders were found for HLA-W Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HLA-W Gene

Publications for HLA-W Gene

  1. Host determinants of HIV-1 control in African Americans. (PMID: 20205591) Pelak K. … . (J. Infect. Dis. 2010) 3 46 64
  2. Molecular dynamics of MHC genesis unraveled by sequence analysis of the 1,796,938-bp HLA class I region. (PMID: 10557312) Shiina T. … Inoko H. (Proc. Natl. Acad. Sci. U.S.A. 1999) 2 3 64
  3. The HLA class I gene family includes at least six genes and twelve pseudogenes and gene fragments. (PMID: 1517563) Geraghty D.E. … Orr H.T. (J. Immunol. 1992) 2 3 64
  4. A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study. (PMID: 22075330) Granada M. … O'Connor G.T. (J. Allergy Clin. Immunol. 2012) 46 64

Products for HLA-W Gene

Sources for HLA-W Gene

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