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Aliases for HLA-W Gene

Aliases for HLA-W Gene

  • Major Histocompatibility Complex, Class I, W (Pseudogene) 2 3 5
  • HLA-80 Pseudogene 2 3
  • HLA-80 3

External Ids for HLA-W Gene

Previous HGNC Symbols for HLA-W Gene

  • HLA-80

Previous GeneCards Identifiers for HLA-W Gene

  • GC06P030032
  • GC06P030035
  • GC06P029923
  • GC06P029722
  • GC06P030097
  • GC06P030196
  • GC06P030346
  • GC06P030495
  • GC06P030697
  • GC06P030858

Summaries for HLA-W Gene

GeneCards Summary for HLA-W Gene

HLA-W (Major Histocompatibility Complex, Class I, W (Pseudogene)) is a Pseudogene.

Additional gene information for HLA-W Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HLA-W Gene

Genomics for HLA-W Gene

Regulatory Elements for HLA-W Gene

Enhancers for HLA-W Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H029963 2 FANTOM5 Ensembl ENCODE dbSUPER 31.1 +10.4 10416 4.8 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 PPARGC1A MEF2D HLA-A HLA-K ENSG00000237669 ZNRD1 HLA-W TRIM39 HLA-H PPP1R10 MDC1 HLA-J
GH06H029940 1.3 ENCODE dbSUPER 42.2 -13.6 -13574 3.7 HDGF PKNOX1 ATF1 ARID4B DMAP1 ZNF2 YY1 GLIS2 ZNF143 ATF7 HLA-J HLA-T HLA-G HLA-H HLA-W HLA-K HLA-A ENSG00000237669 ZFP57 HLA-U
GH06H029848 0.9 ENCODE 50.6 -107.6 -107616 0.2 ELF3 RB1 ZFP64 ARID4B KLF17 ZNF2 ZSCAN9 RAD21 RFX5 EGR1 HLA-W HLA-H TRIM31-AS1 TRIM31 HLA-F MICF HCGVIII-2
GH06H030611 1.7 Ensembl ENCODE dbSUPER 21.5 +659.7 659719 8.7 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC MEF2D SSRP1 MDC1 DDX39B TRIM39 PPP1R10 ABCF1 NRM DHX16 ZNRD1 GTF2H4 TRIM26
GH06H029850 0.6 Ensembl 50.6 -105.5 -105534 0.2 PKNOX1 ATF1 ATF2 CTBP1 ATF7 ZNF24 CREM EZH2 HLA-W HLA-H HLA-A ZFP57 ERVK9-12 TRIM31-AS1 TRIM31 MICF HCGVIII-2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HLA-W on UCSC Golden Path with GeneCards custom track

Genomic Locations for HLA-W Gene

Genomic Locations for HLA-W Gene
3,225 bases
Plus strand

Genomic View for HLA-W Gene

Genes around HLA-W on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HLA-W Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HLA-W Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HLA-W Gene

Post-translational modifications for HLA-W Gene

No Post-translational modifications

No data available for DME Specific Peptides for HLA-W Gene

Domains & Families for HLA-W Gene

Gene Families for HLA-W Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HLA-W: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HLA-W Gene

Function for HLA-W Gene

Phenotypes From GWAS Catalog for HLA-W Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HLA-W Gene

Localization for HLA-W Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HLA-W Gene

Pathways & Interactions for HLA-W Gene

SuperPathways for HLA-W Gene

No Data Available

Interacting Proteins for HLA-W Gene

Gene Ontology (GO) - Biological Process for HLA-W Gene


No data available for Pathways by source and SIGNOR curated interactions for HLA-W Gene

Drugs & Compounds for HLA-W Gene

No Compound Related Data Available

Transcripts for HLA-W Gene

mRNA/cDNA for HLA-W Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HLA-W Gene

No ASD Table

Relevant External Links for HLA-W Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HLA-W Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HLA-W Gene

mRNA differential expression in normal tissues according to GTEx for HLA-W Gene

This gene is overexpressed in Whole Blood (x10.0).
genes like me logo Genes that share expression patterns with HLA-W: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HLA-W Gene

Orthologs for HLA-W Gene

Evolution for HLA-W Gene

Gene Tree for HLA-W (if available)
Gene Tree for HLA-W (if available)

No data available for Orthologs for HLA-W Gene

Paralogs for HLA-W Gene

No data available for Paralogs for HLA-W Gene

Variants for HLA-W Gene

Relevant External Links for HLA-W Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HLA-W Gene

Disorders for HLA-W Gene

Relevant External Links for HLA-W

Genetic Association Database (GAD)
Human Genome Epidemiology (HuGE) Navigator

No disorders were found for HLA-W Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HLA-W Gene

Publications for HLA-W Gene

  1. Host determinants of HIV-1 control in African Americans. (PMID: 20205591) Pelak K … National Institute of Allergy and Infectious Diseases Center for HIV/AIDS Vaccine Immunology (CHAVI) (The Journal of infectious diseases 2010) 3 45 60
  2. Molecular dynamics of MHC genesis unraveled by sequence analysis of the 1,796,938-bp HLA class I region. (PMID: 10557312) Shiina T … Inoko H (Proceedings of the National Academy of Sciences of the United States of America 1999) 2 3 60
  3. The HLA class I gene family includes at least six genes and twelve pseudogenes and gene fragments. (PMID: 1517563) Geraghty DE … Orr HT (Journal of immunology (Baltimore, Md. : 1950) 1992) 2 3 60
  4. A genome-wide association study of plasma total IgE concentrations in the Framingham Heart Study. (PMID: 22075330) Granada M … O'Connor GT (The Journal of allergy and clinical immunology 2012) 45 60

Products for HLA-W Gene

Sources for HLA-W Gene

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