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Aliases for HLA-U Gene

Aliases for HLA-U Gene

  • Major Histocompatibility Complex, Class I, U (Pseudogene) 2 3 5
  • HLA-21 Pseudogene 2 3
  • HLA-21 3

External Ids for HLA-U Gene

Previous HGNC Symbols for HLA-U Gene

  • HLA-21

Previous GeneCards Identifiers for HLA-U Gene

  • GC06P030010
  • GC06P029917
  • GC06P029919
  • GC06P029699
  • GC06P029932
  • GC06P029948
  • GC06P030185
  • GC06P030201
  • GC06P030240
  • GC06P030350
  • GC06P030503
  • GC06P030706

Summaries for HLA-U Gene

GeneCards Summary for HLA-U Gene

HLA-U (Major Histocompatibility Complex, Class I, U (Pseudogene)) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HLA-U Gene

Genomics for HLA-U Gene

Regulatory Elements for HLA-U Gene

Enhancers for HLA-U Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G030153 1.3 Ensembl ENCODE 38.2 +221.7 221657 3.8 PKNOX1 ATF1 ARID4B FEZF1 ZNF2 GLIS2 ZNF143 KLF7 FOS ZNF263 HLA-U TRIM31 HCG18 HCG4P7 ETF1P1 PPP1R10 HLA-A PAIP1P1 TRIM31-AS1 GTF2H4
GH06G030162 1.1 ENCODE 43.9 +230.0 230002 2.8 HDGF PKNOX1 ARNT ZFP64 SIN3A ARID4B DMAP1 FEZF1 ZNF2 YY1 HCG18 HLA-U GTF2H4 HCG4P7 ZNRD1ASP CCHCR1 PPP1R10 ETF1P1 TCF19 TRIM26
GH06G030205 1.2 Ensembl ENCODE 33.4 +273.7 273681 3.4 FOXA2 MLX ARID4B DMAP1 YY1 SLC30A9 SP5 NFYC MIER2 PPARG HLA-U TRIM31 ZFP57 HLA-W ZNRD1 HCG18 HLA-A HCG4P3 HCG4 PIR43263
GH06G030200 1.2 Ensembl ENCODE 33.4 +267.7 267734 2.2 ZFP64 ARID4B ZNF2 YY1 ZNF143 ZNF263 REST TBX21 KAT8 SSRP1 HLA-U ZFP57 HCG18 HLA-A HLA-G PIR43263 PAIP1P1
GH06G030111 1.1 Ensembl ENCODE 35.4 +178.9 178889 2.9 HDGF TBP PKNOX1 FOXA2 ATF1 BMI1 RARA RELB IKZF2 CEBPB HLA-U HLA-H ZFP57 ZNRD1ASP HCG4 TRIM31 RNF39 HCG18 HLA-A HLA-L
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HLA-U on UCSC Golden Path with GeneCards custom track

Genomic Location for HLA-U Gene

Chromosome:
6
Start:
29,933,764 bp from pter
End:
29,934,880 bp from pter
Size:
1,117 bases
Orientation:
Plus strand

Genomic View for HLA-U Gene

Genes around HLA-U on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HLA-U Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HLA-U Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HLA-U Gene

Post-translational modifications for HLA-U Gene

No Post-translational modifications

No data available for DME Specific Peptides for HLA-U Gene

Domains & Families for HLA-U Gene

Gene Families for HLA-U Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HLA-U: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HLA-U Gene

Function for HLA-U Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HLA-U Gene

Localization for HLA-U Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HLA-U Gene

Pathways & Interactions for HLA-U Gene

SuperPathways for HLA-U Gene

No Data Available

Interacting Proteins for HLA-U Gene

Gene Ontology (GO) - Biological Process for HLA-U Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HLA-U Gene

Drugs & Compounds for HLA-U Gene

No Compound Related Data Available

Transcripts for HLA-U Gene

mRNA/cDNA for HLA-U Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HLA-U Gene

No ASD Table

Relevant External Links for HLA-U Gene

GeneLoc Exon Structure for
HLA-U
ECgene alternative splicing isoforms for
HLA-U

Expression for HLA-U Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HLA-U Gene

mRNA differential expression in normal tissues according to GTEx for HLA-U Gene

This gene is overexpressed in Whole Blood (x9.3).
genes like me logo Genes that share expression patterns with HLA-U: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HLA-U Gene

Orthologs for HLA-U Gene

Evolution for HLA-U Gene

ENSEMBL:
Gene Tree for HLA-U (if available)
TreeFam:
Gene Tree for HLA-U (if available)

No data available for Orthologs for HLA-U Gene

Paralogs for HLA-U Gene

No data available for Paralogs for HLA-U Gene

Variants for HLA-U Gene

Relevant External Links for HLA-U Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HLA-U

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HLA-U Gene

Disorders for HLA-U Gene

No disorders were found for HLA-U Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HLA-U Gene

Publications for HLA-U Gene

  1. Molecular dynamics of MHC genesis unraveled by sequence analysis of the 1,796,938-bp HLA class I region. (PMID: 10557312) Shiina T. … Inoko H. (Proc. Natl. Acad. Sci. U.S.A. 1999) 3 64
  2. The HLA class I gene family includes at least six genes and twelve pseudogenes and gene fragments. (PMID: 1517563) Geraghty D.E. … Orr H.T. (J. Immunol. 1992) 3 64

Products for HLA-U Gene

Sources for HLA-U Gene

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