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Aliases for HLA-U Gene

Aliases for HLA-U Gene

  • Major Histocompatibility Complex, Class I, U (Pseudogene) 2 3 5
  • HLA-21 Pseudogene 2 3
  • HLA-21 3

External Ids for HLA-U Gene

Previous HGNC Symbols for HLA-U Gene

  • HLA-21

Previous GeneCards Identifiers for HLA-U Gene

  • GC06P030010
  • GC06P029917
  • GC06P029919
  • GC06P029699
  • GC06P029932
  • GC06P029948
  • GC06P030185
  • GC06P030201
  • GC06P030240
  • GC06P030350
  • GC06P030503
  • GC06P030706
  • GC06P030867

Summaries for HLA-U Gene

GeneCards Summary for HLA-U Gene

HLA-U (Major Histocompatibility Complex, Class I, U (Pseudogene)) is a Pseudogene.

Additional gene information for HLA-U Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HLA-U Gene

Genomics for HLA-U Gene

Regulatory Elements for HLA-U Gene

Enhancers for HLA-U Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H030162 1.1 ENCODE 53.3 +230.0 230002 2.8 ZFP64 ARID4B DMAP1 YY1 SLC30A9 ZNF302 SP3 SP5 ZC3H11A MXD4 MDC1 HCG18 GTF2H4 ZNRD1ASP TRIM39 PPP1R10 HLA-U ETF1P1 ERVK9-12 ENSG00000233892
GH06H030153 1.3 Ensembl ENCODE 38.2 +221.7 221657 3.8 PKNOX1 ATF1 ARID4B FEZF1 ZNF2 GLIS2 ZNF143 FOS KLF7 ATF7 HLA-U TRIM31 HCG18 MDC1 ERVK9-12 ETF1P1 PPP1R10 HLA-A ENSG00000233892 TRIM39
GH06H030210 1.1 ENCODE 39.6 +279.1 279126 4.1 PKNOX1 MLX ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 ZNF143 FOS HLA-U TRIM31 MICD HLA-K HLA-W DHX16 ENSG00000233892 TRIM39 TRIM26 MDC1
GH06H030205 1.3 Ensembl ENCODE 33.4 +273.7 273681 3.4 FOXA2 MLX ARID4B DMAP1 YY1 SLC30A9 RUNX3 SP5 NFYC MIER2 HLA-U TRIM31 ZNRD1 ABCF1 DHX16 TRIM39 MDC1 ZFP57 ERVK9-12 HLA-W
GH06H030200 1.2 Ensembl ENCODE 33.4 +267.7 267734 2.2 FOXA2 TBL1XR1 ZFP64 BMI1 BATF YY1 RUNX3 IKZF2 SMARCA5 CBFB HLA-U ZFP57 HCG18 HLA-A HLA-G PIR43263 ENSG00000233892
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HLA-U on UCSC Golden Path with GeneCards custom track

Genomic Locations for HLA-U Gene

Genomic Locations for HLA-U Gene
chr6:29,933,764-29,934,880
(GRCh38/hg38)
Size:
1,117 bases
Orientation:
Plus strand
chr6:29,901,541-29,902,657
(GRCh37/hg19)

Genomic View for HLA-U Gene

Genes around HLA-U on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HLA-U Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HLA-U Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HLA-U Gene

Post-translational modifications for HLA-U Gene

No Post-translational modifications

No data available for DME Specific Peptides for HLA-U Gene

Domains & Families for HLA-U Gene

Gene Families for HLA-U Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HLA-U: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HLA-U Gene

Function for HLA-U Gene

Phenotypes From GWAS Catalog for HLA-U Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HLA-U Gene

Localization for HLA-U Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HLA-U Gene

Pathways & Interactions for HLA-U Gene

SuperPathways for HLA-U Gene

No Data Available

Interacting Proteins for HLA-U Gene

Gene Ontology (GO) - Biological Process for HLA-U Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HLA-U Gene

Drugs & Compounds for HLA-U Gene

No Compound Related Data Available

Transcripts for HLA-U Gene

mRNA/cDNA for HLA-U Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HLA-U Gene

No ASD Table

Relevant External Links for HLA-U Gene

GeneLoc Exon Structure for
HLA-U
ECgene alternative splicing isoforms for
HLA-U

Expression for HLA-U Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HLA-U Gene

mRNA differential expression in normal tissues according to GTEx for HLA-U Gene

This gene is overexpressed in Whole Blood (x9.3).
genes like me logo Genes that share expression patterns with HLA-U: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HLA-U Gene

Orthologs for HLA-U Gene

Evolution for HLA-U Gene

ENSEMBL:
Gene Tree for HLA-U (if available)
TreeFam:
Gene Tree for HLA-U (if available)

No data available for Orthologs for HLA-U Gene

Paralogs for HLA-U Gene

No data available for Paralogs for HLA-U Gene

Variants for HLA-U Gene

Relevant External Links for HLA-U Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HLA-U

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HLA-U Gene

Disorders for HLA-U Gene

No disorders were found for HLA-U Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HLA-U Gene

Publications for HLA-U Gene

  1. Molecular dynamics of MHC genesis unraveled by sequence analysis of the 1,796,938-bp HLA class I region. (PMID: 10557312) Shiina T … Inoko H (Proceedings of the National Academy of Sciences of the United States of America 1999) 3 60
  2. The HLA class I gene family includes at least six genes and twelve pseudogenes and gene fragments. (PMID: 1517563) Geraghty DE … Orr HT (Journal of immunology (Baltimore, Md. : 1950) 1992) 3 60

Products for HLA-U Gene

Sources for HLA-U Gene

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