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Aliases for HLA-T Gene

Aliases for HLA-T Gene

  • Major Histocompatibility Complex, Class I, T (Pseudogene) 2 3 5
  • HLA-16 Pseudogene 2 3
  • HLA-16 3

External Ids for HLA-T Gene

Previous HGNC Symbols for HLA-T Gene

  • HLA-16

Previous GeneCards Identifiers for HLA-T Gene

  • GC06P029975
  • GC06Pc30002
  • GC06P029865
  • GC06P029669
  • GC06P030069
  • GC06P030180
  • GC06P030091
  • GC06P030169
  • GC06P030341
  • GC06P030487

Summaries for HLA-T Gene

GeneCards Summary for HLA-T Gene

HLA-T (Major Histocompatibility Complex, Class I, T (Pseudogene)) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HLA-T Gene

Genomics for HLA-T Gene

Regulatory Elements for HLA-T Gene

Enhancers for HLA-T Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F029940 1 ENCODE 62.3 +45.8 45818 3.7 HDGF PKNOX1 ATF1 WRNIP1 ZFP64 ARID4B DMAP1 ZNF2 YY1 GLIS2 HLA-J HLA-T HLA-G HLA-H HLA-W HLA-K HLA-A HCG4P3 ZFP57 HLA-U
GH06F029952 0.8 Ensembl ENCODE 56.4 +56.9 56852 1.3 ZNF146 JUND ATF3 NR2F1 JUN ADNP NR2F6 HLA-J HLA-T HLA-K HLA-A HCG4P5 ZFP57 MICD HCG4P3 HCG4P4 PIR61557
GH06F029947 0.5 ENCODE 62.3 +51.1 51076 0.2 PAF1 POLR2A ZBED1 HLA-J HLA-T HLA-A HLA-H PIR61557 HCG4P4
GH06F029789 0.8 ENCODE 21 -104.9 -104875 3.9 CTCF CBX3 PKNOX1 ZFP64 TAL1 BACH1 RAD21 YY1 ZNF316 POLR2A HCG4 HLA-H ZNRD1 HLA-A HLA-T ZNRD1ASP HCG4P3 ZFP57 TRIM31-AS1 TRIM31
GH06F030645 1.2 ENCODE 6.7 +750.8 750849 2.6 HDGF PKNOX1 ARNT MLX ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 RPL7P4 ABCF1 TMPOP1 UBQLN1P1 SNORA38 HLA-P ENSG00000233902 DHX16 DDX39B HCG18
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HLA-T on UCSC Golden Path with GeneCards custom track

Genomic Location for HLA-T Gene

Chromosome:
6
Start:
29,896,443 bp from pter
End:
29,898,947 bp from pter
Size:
2,505 bases
Orientation:
Plus strand

Genomic View for HLA-T Gene

Genes around HLA-T on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HLA-T Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HLA-T Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HLA-T Gene

Post-translational modifications for HLA-T Gene

No Post-translational modifications

No data available for DME Specific Peptides for HLA-T Gene

Domains & Families for HLA-T Gene

Gene Families for HLA-T Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HLA-T: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HLA-T Gene

Function for HLA-T Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HLA-T Gene

Localization for HLA-T Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HLA-T Gene

Pathways & Interactions for HLA-T Gene

SuperPathways for HLA-T Gene

No Data Available

Interacting Proteins for HLA-T Gene

Gene Ontology (GO) - Biological Process for HLA-T Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HLA-T Gene

Transcripts for HLA-T Gene

mRNA/cDNA for HLA-T Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HLA-T Gene

No ASD Table

Relevant External Links for HLA-T Gene

GeneLoc Exon Structure for
HLA-T
ECgene alternative splicing isoforms for
HLA-T

Expression for HLA-T Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HLA-T Gene

mRNA differential expression in normal tissues according to GTEx for HLA-T Gene

This gene is overexpressed in Whole Blood (x6.6).
genes like me logo Genes that share expression patterns with HLA-T: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HLA-T Gene

Orthologs for HLA-T Gene

Evolution for HLA-T Gene

ENSEMBL:
Gene Tree for HLA-T (if available)
TreeFam:
Gene Tree for HLA-T (if available)

No data available for Orthologs for HLA-T Gene

Paralogs for HLA-T Gene

No data available for Paralogs for HLA-T Gene

Variants for HLA-T Gene

Relevant External Links for HLA-T Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HLA-T

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HLA-T Gene

Disorders for HLA-T Gene

Relevant External Links for HLA-T

Human Genome Epidemiology (HuGE) Navigator
HLA-T

No disorders were found for HLA-T Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HLA-T Gene

Publications for HLA-T Gene

  1. HLA alleles and haplotypes in French North African immigrants. (PMID: 16829309) PAcdron B. … Sterkers G. (Hum. Immunol. 2006) 3 64
  2. [High resolution DNA typing for HLA-A, B, Cw genes by polymerase chain reaction-sequence specific oligonucleotide probes method in the Shenyang Han population]. (PMID: 16331567) Han S.X. … Song F.J. (Zhonghua Yi Xue Yi Chuan Xue Za Zhi 2005) 3 64
  3. Predisposing HLA-DQ2 and HLA-DQ8 haplotypes of coeliac disease and associated enteropathy in microscopic colitis. (PMID: 16292086) FernA!ndez-BaA+ares F. … Viver J.M. (Eur J Gastroenterol Hepatol 2005) 3 64
  4. Molecular dynamics of MHC genesis unraveled by sequence analysis of the 1,796,938-bp HLA class I region. (PMID: 10557312) Shiina T. … Inoko H. (Proc. Natl. Acad. Sci. U.S.A. 1999) 3 64
  5. The HLA class I gene family includes at least six genes and twelve pseudogenes and gene fragments. (PMID: 1517563) Geraghty D.E. … Orr H.T. (J. Immunol. 1992) 3 64

Products for HLA-T Gene

Sources for HLA-T Gene

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