Aliases for HLA-T Gene
Aliases for HLA-T Gene
External Ids for HLA-T Gene
- HGNC: 23478
- Entrez Gene: 352964
- Ensembl: ENSG00000231130
Previous HGNC Symbols for HLA-T Gene
- HLA-16
Previous GeneCards Identifiers for HLA-T Gene
- GC06P029975
- GC06Pc30002
- GC06P029865
- GC06P029669
- GC06P030069
- GC06P030180
- GC06P030091
- GC06P030169
- GC06P030341
- GC06P030487
- GC06P030688
Summaries for HLA-T Gene
GeneCards Summary for HLA-T Gene
HLA-T (Major Histocompatibility Complex, Class I, T (Pseudogene)) is a Pseudogene.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HLA-T Gene
Genomics for HLA-T Gene
Regulatory Elements for HLA-T Gene
Enhancers for HLA-T Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH06G029940 | 1.3 | ENCODE dbSUPER | 62.3 | +45.8 | 45818 | 3.7 | HDGF PKNOX1 FOXA2 WRNIP1 ZFP64 ARID4B DMAP1 ZNF2 YY1 ZNF143 | HLA-J HLA-T HLA-G HLA-H HLA-W HLA-K HLA-A HCG4P3 ZFP57 HLA-U |
| GH06G029952 | 0.9 | Ensembl ENCODE | 56.4 | +56.9 | 56852 | 1.3 | FOSL1 ZNF146 JUND ATF3 NR2F1 JUN ADNP NR2F6 | HLA-J HLA-T HLA-K HLA-A HCG4P5 ZFP57 MICD HCG4P3 HCG4P4 PIR61557 |
| GH06G029947 | 0.8 | ENCODE dbSUPER | 62.3 | +51.1 | 51076 | 0.2 | PAF1 POLR2A ZBED1 BACH1 RBFOX2 | HLA-J HLA-T HLA-A HLA-H PIR61557 HCG4P4 |
| GH06G029789 | 1.1 | ENCODE dbSUPER | 21 | -104.9 | -104875 | 3.9 | CBX3 PKNOX1 ZFP64 RAD21 YY1 TCF12 CBX5 SCRT2 ZNF207 FOS | HCG4 HLA-H ZNRD1 HLA-A HLA-T ZNRD1ASP HCG4P3 ZFP57 TRIM31-AS1 TRIM31 |
| GH06G030645 | 1.2 | ENCODE | 6.7 | +750.8 | 750849 | 2.6 | MLX AGO1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 TBX21 SSRP1 | NRM C6orf136 HLA-L HLA-T MICA DHX16 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around HLA-T on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for HLA-T Gene
- Chromosome:
- 6
- Start:
- 29,896,443 bp from pter
- End:
- 29,898,947 bp from pter
- Size:
- 2,505 bases
- Orientation:
- Plus strand
Genomic View for HLA-T Gene
Genes around HLA-T on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 6p22.1 by Ensembl
- 6p22.1 by Entrez Gene
- 6p22.1 by HGNC
HLA-T Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for HLA-T Gene
Proteins for HLA-T Gene
Post-translational modifications for HLA-T Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for HLA-T
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for HLA-T
- Origene Custom Protein Services for HLA-T
- Search GeneTex for Proteins for HLA-T
Assay Products
No data available for DME Specific Peptides for HLA-T Gene
Domains & Families for HLA-T Gene
Gene Families for HLA-T Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HLA-T Gene
Function for HLA-T Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Search ViGene Biosciences for HLA-T
CRISPR Products
- Browse CRISPR knockouts for HLA-T
miRNA Products
- Search ViGene Biosciences for HLA-T
Inhibitory RNA Products
- Search ViGene Biosciences for HLA-T
Cell Line Products
- Search ViGene Biosciences for HLA-T
Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HLA-T Gene
Localization for HLA-T Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HLA-T Gene
Transcripts for HLA-T Gene
mRNA/cDNA for HLA-T Gene
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
CRISPR Products
- Browse CRISPR knockouts for HLA-T
miRNA Products
- Search ViGene Biosciences for HLA-T
Inhibitory RNA Products
- Search ViGene Biosciences for HLA-T
Flow Cytometry Products
Expression for HLA-T Gene
mRNA differential expression in normal tissues according to GTEx for HLA-T Gene
This gene is overexpressed in Whole Blood (x6.6).
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HLA-T Gene
Orthologs for HLA-T Gene
No data available for Orthologs for HLA-T Gene
Paralogs for HLA-T Gene
No data available for Paralogs for HLA-T Gene
Variants for HLA-T Gene
Relevant External Links for HLA-T Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- HLA-T
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HLA-T Gene
Disorders for HLA-T Gene
Relevant External Links for HLA-T
- Human Genome Epidemiology (HuGE) Navigator
- HLA-T
No disorders were found for HLA-T Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HLA-T Gene
Publications for HLA-T Gene
- HLA alleles and haplotypes in French North African immigrants. (PMID: 16829309) PAcdron B. … Sterkers G. (Hum. Immunol. 2006) 3 64
- Predisposing HLA-DQ2 and HLA-DQ8 haplotypes of coeliac disease and associated enteropathy in microscopic colitis. (PMID: 16292086) FernA!ndez-BaA+ares F. … Viver J.M. (Eur J Gastroenterol Hepatol 2005) 3 64
- [High resolution DNA typing for HLA-A, B, Cw genes by polymerase chain reaction-sequence specific oligonucleotide probes method in the Shenyang Han population]. (PMID: 16331567) Han S.X. … Song F.J. (Zhonghua Yi Xue Yi Chuan Xue Za Zhi 2005) 3 64
- Molecular dynamics of MHC genesis unraveled by sequence analysis of the 1,796,938-bp HLA class I region. (PMID: 10557312) Shiina T. … Inoko H. (Proc. Natl. Acad. Sci. U.S.A. 1999) 3 64
- The HLA class I gene family includes at least six genes and twelve pseudogenes and gene fragments. (PMID: 1517563) Geraghty D.E. … Orr H.T. (J. Immunol. 1992) 3 64
Products for HLA-T Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
- Browse Activity Assays
- Browse cDNA Clones
- Browse Cell Culture Products
- Browse Cell Selection and Detection Kits
- Browse DNA Damage and Repair Kits
- Browse ELISpot/FluoroSpot Kits and Development Modules
- Browse Flow Cytometry Kits
- Browse Immunoprecipitation Assays
- Browse Luminex Assays
- Browse Peptides
- Browse Proteome Profiler Antibody Arrays
- Browse Small Molecules
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for HLA-T
- Origene Custom Protein Services for HLA-T
- Browse OriGene Inhibitory RNA Products For HLA-T
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for HLA-T
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For HLA-T
- GenScript: Custom all cDNA clones Services for HLA-T
- GenScript Custom Purified and Recombinant Proteins Services for HLA-T
- GenScript Custom Assay Services for HLA-T
- GenScript Custom overexpressing Cell Line Services for HLA-T
- Browse GenScript CRISPR for HLA-T
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
- Gene Synthesis: Any Gene in Any Vector
- Vector-based siRNA and miRNA, Ready for Transfection
- Gene Mutant Library, Variants up to 10^11
- Plasmid Preparation
- GenScript Custom Peptide Services for HLA-T
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Proteins
- Sino Biological Antibodies
- Sino Biological ELISA Kits and Pair Sets
- Sino Biological Cell Lysates
- Sino Biological qPCR Primers
- Sino Biological CRO Services for Proteins, Antibodies and Genes
- Sino Biological Transfection Reagents
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Search ViGene Biosciences for HLA-T
- Cyagen custom Knockout/knockin (KOKI) mouse models for HLA-T
- VectorBuilder custom plasmid, inducible vectors for HLA-T
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for HLA-T
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for HLA-T Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
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- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer