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Aliases for HLA-T Gene

Aliases for HLA-T Gene

  • Major Histocompatibility Complex, Class I, T (Pseudogene) 2 3 5
  • HLA-16 Pseudogene 2 3
  • HLA-16 3

External Ids for HLA-T Gene

Previous HGNC Symbols for HLA-T Gene

  • HLA-16

Previous GeneCards Identifiers for HLA-T Gene

  • GC06P029975
  • GC06Pc30002
  • GC06P029865
  • GC06P029669
  • GC06P030069
  • GC06P030180
  • GC06P030091
  • GC06P030169
  • GC06P030341
  • GC06P030487
  • GC06P030688
  • GC06P030852
  • GC06P031014

Summaries for HLA-T Gene

GeneCards Summary for HLA-T Gene

HLA-T (Major Histocompatibility Complex, Class I, T (Pseudogene)) is a Pseudogene.

Additional gene information for HLA-T Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HLA-T Gene

Genomics for HLA-T Gene

GeneHancer (GH) Regulatory Elements for HLA-T Gene

Promoters and enhancers for HLA-T Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I029940 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 62.3 +45.8 45818 3.7 HDGF PKNOX1 SMAD1 ARID4B DMAP1 ZNF2 YY1 GLIS2 ZNF143 ATF7 HLA-A HCG4P5 PIR61557 HLA-J HLA-T HLA-G HLA-H HLA-W HLA-K HCG4P3
GH06I029947 Enhancer 0.7 ENCODE dbSUPER 62.3 +51.1 51076 0.2 PAF1 POLR2A NFATC1 ZBED1 BACH1 CBFA2T3 HLA-J HLA-T HLA-A HLA-H PIR61557 HCG4P4
GH06I029952 Enhancer 0.7 Ensembl ENCODE 56.5 +56.9 56852 1.3 FOSL1 SP1 JUND JUN ADNP FOSL2 HLA-J HLA-T HLA-K HLA-A HCG4P5 ZFP57 MICD HCG4P3 HCG4P4 PIR61557
GH06I029789 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 21 -104.9 -104875 3.9 CTCF PKNOX1 NR2F1 CEBPB USF2 MAX RAD21 YY1 JUND MTA1 HCG4 HLA-V HLA-H ZNRD1 HLA-A HLA-T ZNRD1ASP HCG4P3 ZFP57 TRIM31-AS1
GH06I030645 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 6.7 +750.8 750849 2.6 HDGF PKNOX1 FOXA2 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 C6orf136 HLA-L PRR3 NRM HCG18 HLA-T MICA ATAT1 DHX16
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HLA-T on UCSC Golden Path with GeneCards custom track

Genomic Locations for HLA-T Gene

Genomic Locations for HLA-T Gene
chr6:29,896,443-29,898,947
(GRCh38/hg38)
Size:
2,505 bases
Orientation:
Plus strand
chr6:29,864,220-29,866,724
(GRCh37/hg19)

Genomic View for HLA-T Gene

Genes around HLA-T on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HLA-T Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HLA-T Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HLA-T Gene

Post-translational modifications for HLA-T Gene

No Post-translational modifications

No data available for DME Specific Peptides for HLA-T Gene

Domains & Families for HLA-T Gene

Gene Families for HLA-T Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HLA-T: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HLA-T Gene

Function for HLA-T Gene

Phenotypes From GWAS Catalog for HLA-T Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HLA-T Gene

Localization for HLA-T Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HLA-T Gene

Pathways & Interactions for HLA-T Gene

SuperPathways for HLA-T Gene

No Data Available

Interacting Proteins for HLA-T Gene

Gene Ontology (GO) - Biological Process for HLA-T Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HLA-T Gene

Drugs & Compounds for HLA-T Gene

No Compound Related Data Available

Transcripts for HLA-T Gene

mRNA/cDNA for HLA-T Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HLA-T Gene

No ASD Table

Relevant External Links for HLA-T Gene

GeneLoc Exon Structure for
HLA-T
ECgene alternative splicing isoforms for
HLA-T

Expression for HLA-T Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HLA-T Gene

mRNA differential expression in normal tissues according to GTEx for HLA-T Gene

This gene is overexpressed in Whole Blood (x6.6).
genes like me logo Genes that share expression patterns with HLA-T: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HLA-T Gene

Orthologs for HLA-T Gene

Evolution for HLA-T Gene

ENSEMBL:
Gene Tree for HLA-T (if available)
TreeFam:
Gene Tree for HLA-T (if available)

No data available for Orthologs for HLA-T Gene

Paralogs for HLA-T Gene

No data available for Paralogs for HLA-T Gene

Variants for HLA-T Gene

Additional Variant Information for HLA-T Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HLA-T

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HLA-T Gene

Disorders for HLA-T Gene

Additional Disease Information for HLA-T

Human Genome Epidemiology Navigator
(HuGE)

No disorders were found for HLA-T Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HLA-T Gene

Publications for HLA-T Gene

  1. HLA alleles and haplotypes in French North African immigrants. (PMID: 16829309) Pédron B … Sterkers G (Human immunology 2006) 3 58
  2. Predisposing HLA-DQ2 and HLA-DQ8 haplotypes of coeliac disease and associated enteropathy in microscopic colitis. (PMID: 16292086) Fernández-Bañares F … Viver JM (European journal of gastroenterology & hepatology 2005) 3 58
  3. [High resolution DNA typing for HLA-A, B, Cw genes by polymerase chain reaction-sequence specific oligonucleotide probes method in the Shenyang Han population]. (PMID: 16331567) Han SX … Song FJ (Zhonghua yi xue yi chuan xue za zhi = Zhonghua yixue yichuanxue zazhi = Chinese journal of medical genetics 2005) 3 58
  4. Molecular dynamics of MHC genesis unraveled by sequence analysis of the 1,796,938-bp HLA class I region. (PMID: 10557312) Shiina T … Inoko H (Proceedings of the National Academy of Sciences of the United States of America 1999) 3 58
  5. The HLA class I gene family includes at least six genes and twelve pseudogenes and gene fragments. (PMID: 1517563) Geraghty DE … Orr HT (Journal of immunology (Baltimore, Md. : 1950) 1992) 3 58

Products for HLA-T Gene

Sources for HLA-T Gene

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