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Aliases for HLA-S Gene

Aliases for HLA-S Gene

  • Major Histocompatibility Complex, Class I, S (Pseudogene) 2 3 5
  • HLA-17 3

External Ids for HLA-S Gene

Previous GeneCards Identifiers for HLA-S Gene

  • GC06U900019
  • GC06M031458
  • GC06M031350
  • GC06M031140
  • GC06M031356
  • GC06M031371

Summaries for HLA-S Gene

GeneCards Summary for HLA-S Gene

HLA-S (Major Histocompatibility Complex, Class I, S (Pseudogene)) is a Pseudogene. Diseases associated with HLA-S include Mesial Temporal Lobe Epilepsy With Hippocampal Sclerosis and T-Cell Prolymphocytic Leukemia.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HLA-S Gene

Genomics for HLA-S Gene

Genomic Location for HLA-S Gene

Chromosome:
6
Start:
31,381,569 bp from pter
End:
31,382,487 bp from pter
Size:
919 bases
Orientation:
Minus strand

Genomic View for HLA-S Gene

Genes around HLA-S on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HLA-S Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HLA-S Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Regulatory Elements for HLA-S Gene

Proteins for HLA-S Gene

Post-translational modifications for HLA-S Gene

No Post-translational modifications

No data available for DME Specific Peptides for HLA-S Gene

Domains & Families for HLA-S Gene

Gene Families for HLA-S Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HLA-S: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HLA-S Gene

Function for HLA-S Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HLA-S Gene

Localization for HLA-S Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HLA-S Gene

Pathways & Interactions for HLA-S Gene

SuperPathways for HLA-S Gene

No Data Available

Interacting Proteins for HLA-S Gene

Gene Ontology (GO) - Biological Process for HLA-S Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HLA-S Gene

Drugs & Compounds for HLA-S Gene

(3) Drugs for HLA-S Gene - From: Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
genes like me logo Genes that share compounds with HLA-S: view

Transcripts for HLA-S Gene

mRNA/cDNA for HLA-S Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HLA-S Gene

No ASD Table

Relevant External Links for HLA-S Gene

GeneLoc Exon Structure for
HLA-S
ECgene alternative splicing isoforms for
HLA-S

Expression for HLA-S Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HLA-S Gene

genes like me logo Genes that share expression patterns with HLA-S: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HLA-S Gene

Orthologs for HLA-S Gene

Evolution for HLA-S Gene

ENSEMBL:
Gene Tree for HLA-S (if available)
TreeFam:
Gene Tree for HLA-S (if available)

No data available for Orthologs for HLA-S Gene

Paralogs for HLA-S Gene

No data available for Paralogs for HLA-S Gene

Variants for HLA-S Gene

Relevant External Links for HLA-S Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HLA-S

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HLA-S Gene

Disorders for HLA-S Gene

MalaCards: The human disease database

(3) MalaCards diseases for HLA-S Gene - From: GeneCards

Disorder Aliases PubMed IDs
mesial temporal lobe epilepsy with hippocampal sclerosis
t-cell prolymphocytic leukemia
  • leukemia, t-cell, chronic
granulocytopenia
  • agranulocytosis
- elite association - COSMIC cancer census association via MalaCards
Search HLA-S in MalaCards View complete list of genes associated with diseases

Relevant External Links for HLA-S

Genetic Association Database (GAD)
HLA-S
genes like me logo Genes that share disorders with HLA-S: view

No data available for UniProtKB/Swiss-Prot and Genatlas for HLA-S Gene

Publications for HLA-S Gene

  1. Gene organisation, sequence variation and isochore structure at the centromeric boundary of the human MHC. (PMID: 10452889) Stephens R. … Beck S. (J. Mol. Biol. 1999) 2 3 64
  2. The HLA class I gene family includes at least six genes and twelve pseudogenes and gene fragments. (PMID: 1517563) Geraghty D.E. … Orr H.T. (J. Immunol. 1992) 2 3 64
  3. A genome-wide association study identifies two new risk loci for Graves' disease. (PMID: 21841780) Chu X. … Song H.D. (Nat. Genet. 2011) 46 64
  4. Interaction between ERAP1 and HLA-B27 in ankylosing spondylitis implicates peptide handling in the mechanism for HLA-B27 in disease susceptibility. (PMID: 21743469) Evans D.M. … . (Nat. Genet. 2011) 46 64
  5. Genome-wide association study identifies a susceptibility locus for HCV-induced hepatocellular carcinoma. (PMID: 21499248) Kumar V. … Matsuda K. (Nat. Genet. 2011) 46 64

Products for HLA-S Gene

Sources for HLA-S Gene

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