|
|
major histocompatibility complex, class I, S (pseudogene)
| |
Aliases
for HLA-S gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Major Histocompatibility Complex, Class I, S (Pseudogene)1 2 | | HLA-171 2 |
Export aliases for HLA-S gene to outside databasesPrevious GC identifers: GC06U900019 GC06M031458 GC06M031140 |
Summaries
for HLA-S gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
-- |
Genomic Views
for HLA-S gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| Regulatory elements:
 Search SABiosciences Regulatory transcription factor binding sites for HLA-S
Other transcription factors
Search SABiosciences Chromatin IP Primers for HLA-S
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat HLA-S |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 6p21.3 Ensembl cytogenetic band: 6p21.33 HGNC cytogenetic band: 6p21.3HLA-S Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 6 GeneLoc Exon Structure GeneLoc location for GC06M031350: view genomic region
(about GC identifiers)
Start:
|
31,349,346 bp from pter |
End:
|
31,350,264 bp from pter |
Size:
|
919 bases |
Orientation:
|
minus strand |
4 alternative locations:
| Chr6-,ALT_REF_LOCI_4 31,315,455-31,316,373 | Chr6-,ALT_REF_LOCI_6 31,339,952-31,375,946 | Chr6-,ALT_REF_LOCI_2 31,340,324-31,379,925 | | Chr6-,ALT_REF_LOCI_7 31,272,575-31,273,513 |
|
Proteins
for HLA-S gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB: --
|
Protein
Domains /
Families
for HLA-S gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| -- |
Function
for HLA-S gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
|
Pathways & Interactions
for HLA-S gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for HLA-S
|
Drugs & Compounds
for HLA-S gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
HLA-S for compounds About GeneDecksing
 Browse Tocris compounds for HLA-S
3 Novoseek chemical compound relationships for HLA-S gene About this table
| Compound |
-log (P-Val) |
Hits |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| cyclosporin a |
12.1 |
1 |
11579507 (1) |
| cyclophosphamide |
0 |
2 |
11579507 (1) |
| methotrexate |
0 |
1 |
11579507 (1) |
Search CenterWatch for drugs/clinical trials and news about HLA-S 
|
Transcripts
for HLA-S gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
1 Ensembl transcript including schematic representation, and UCSC links where relevant: ENST00000425174
GeneLoc Exon Structure
|
Expression
for HLA-S gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| HLA-S expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --
About this image SABiosciences Custom PCR Arrays for HLA-S
Primer
Products: |  | Browse OriGene genome-wide validated SYBR primer pairs
Browse OriGene validated miRNA SYBR primer pairs
| | | Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat HLA-S | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat HLA-S | | | Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat HLA-S |
Orthologs
for HLA-S gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
--
ENSEMBL Gene Tree for HLA-S (if available)
TreeFam Gene Tree for HLA-S (if available) |
Paralogs
for HLA-S gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| -- |
Genomic Variants
for HLA-S gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
Locus Specific Mutation Databases (LSDB): HLA-S
| SABiosciences Cancer Mutation PCR Assays |
|
Disorders
/ Diseases
for HLA-S gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database, Novoseek,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
HLA-S for disorders About GeneDecksing
20/43  diseases for HLA-S (see all 43): About MalaCardstemporal lobe epilepsy prolymphocytic leukemia cervical intraepithelial neoplasia t-cell prolymphocytic leukemia
barrett's esophagus granulocytopenia digestive diseases nephrotic syndrome
peyronie's disease peyronies disease psychotic disorder aggressive periodontitis
adult t-cell leukemia hepatitis c leukemia/lymphoma sarcoidosis
spondyloarthropathy cervical cancer t-cell leukemia autoimmune hepatitis
10/18 Novoseek disease relationships for HLA-S gene (see all 18) About this table
Export disorders for HLA-S gene to outside databases
|
Publications
for HLA-S gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for HLA-S gene, integrated from 9 sources (see all 107):
(articles sorted by number of sources associating them with HLA-S) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Gene organisation, sequence variation and isochore structure at the centromeric boundary of the human MHC. (PubMed id 10452889)1, 3 Stephens R....Beck S. (1999)
- The HLA class I gene family includes at least six genes and twelve pseudogenes and gene fragments. (PubMed id 1517563)1, 3 Geraghty D.E....Orr H.T. (1992)
- Does HLA type predispose some individuals to cancer? (PubMed id 10431166)9 Little A.M. and Stern P.L. (1999)
- Screening of multiparous women to avoid transfusion-related acute lung injury: a single centre experience. (PubMed id 19140817)9 Sachs U.J....Bein G. (2008)
- HLAs and risk of acute graft-vs.-host disease after m arrow transplantation from an HLA-identical sibling. (PubMed id 9923410)9 Martin P.J....Hansen J.A. (1998)
- Human leukocyte antigen frequency in human high-grade gliomas: a case-control study in Sicily. (PubMed id 19487887)9 La Torre D....Tomasello F. (2009)
- HLA and autoimmune digestive disease: a clinically oriented review for gastroenterologists. (PubMed id 19098870)9 Cassinotti A....Porro G.B. (2009)
- SKDM human leukocyte antigen (HLA) tool: A comprehensive HLA and disease associations analysis software. (PubMed id 18601964)9 Kanterakis S....Monos D.S. (2008)
- Stem cells derived from human fetal membranes display multilineage differentiation potential. (PubMed id 17494917)9 Ilancheran S....Manuelpillai U. (2007)
- Proton binding to humic acids from organic amendments and amended soils by the NICA-Donnan model. (PubMed id 16190228)9 Plaza C....Polo A. (2005)
|
External Searches for HLA-S gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing HLA-S gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing HLA-S gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing HLA-S gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for HLA-S | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for HLA-S gene:
Search GeneIP for patents involving HLA-S
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for HLA-S gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 |
| | | | |
 |
 |
|  | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat HLA-S | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing HLA-S | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat HLA-S | | | Search QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat HLA-S | | | Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat HLA-S | | | Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat HLA-S |
| |
 |  |  |  | |
| | | | Search Tocris compounds for HLA-S |
| |  |  |  |  | | | | |
 |
 |
 |
 | | | | |  |  |  | | | | Search ThermoFisher Antibodies for HLA-S |
| | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat HLA-S |
|
|
|
|
