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Aliases for HLA-S Gene

Aliases for HLA-S Gene

  • Major Histocompatibility Complex, Class I, S (Pseudogene) 2 3
  • HLA-17 3

External Ids for HLA-S Gene

Previous GeneCards Identifiers for HLA-S Gene

  • GC06U900019
  • GC06M031458
  • GC06M031350
  • GC06M031140
  • GC06M031356
  • GC06M031371

Summaries for HLA-S Gene

GeneCards Summary for HLA-S Gene

HLA-S (Major Histocompatibility Complex, Class I, S (Pseudogene)) is a Pseudogene. Diseases associated with HLA-S include mesial temporal lobe epilepsy with hippocampal sclerosis and granulocytopenia.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HLA-S Gene

Genomics for HLA-S Gene

Genomic Location for HLA-S Gene

31,381,569 bp from pter
31,382,487 bp from pter
919 bases
Minus strand

Genomic View for HLA-S Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HLA-S Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Regulatory Elements for HLA-S Gene

Proteins for HLA-S Gene

Post-translational modifications for HLA-S Gene

No Post-translational modifications

No data available for DME Specific Peptides for HLA-S Gene

Domains for HLA-S Gene

Gene Families for HLA-S Gene

  • HLA :Histocompatibility complex

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HLA-S: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HLA-S Gene

Function for HLA-S Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for HLA-S Gene

Localization for HLA-S Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HLA-S Gene

Pathways for HLA-S Gene

SuperPathways for HLA-S Gene

No Data Available

Interacting Proteins for HLA-S Gene

Gene Ontology (GO) - Biological Process for HLA-S Gene


No data available for Pathways by source for HLA-S Gene

Compounds for HLA-S Gene

(3) Novoseek inferred chemical compound relationships for HLA-S Gene

Compound -log(P) Hits PubMed IDs
cyclosporin a 12.1 1
cyclophosphamide 0 1
methotrexate 0 1
genes like me logo Genes that share compounds with HLA-S: view

Transcripts for HLA-S Gene

mRNA/cDNA for HLA-S Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HLA-S Gene

No ASD Table

Relevant External Links for HLA-S Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HLA-S Gene

mRNA expression in normal human tissues for HLA-S Gene

genes like me logo Genes that share expressions with HLA-S: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for HLA-S Gene

Orthologs for HLA-S Gene

Evolution for HLA-S Gene

Gene Tree for HLA-S (if available)
Gene Tree for HLA-S (if available)

No data available for Orthologs for HLA-S Gene

Paralogs for HLA-S Gene

No data available for Paralogs for HLA-S Gene

Variants for HLA-S Gene

Relevant External Links for HLA-S Gene

HapMap Linkage Disequilibrium report
Locus Specific Mutation Databases (LSDB)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for HLA-S Gene

Disorders for HLA-S Gene

(18) Novoseek inferred disease relationships for HLA-S Gene

Disease -log(P) Hits PubMed IDs
leukemia prolymphocytic 51.4 1
hepatitis autoimmune 35.7 1
genetic susceptibility 34.8 1
autoimmune diseases 32.3 3
hepatitis c 17.1 3

Relevant External Links for HLA-S

Genetic Association Database (GAD)
genes like me logo Genes that share disorders with HLA-S: view

No data available for UniProtKB/Swiss-Prot for HLA-S Gene

Publications for HLA-S Gene

  1. The HLA class I gene family includes at least six genes and twelve pseudogenes and gene fragments. (PMID: 1517563) Geraghty D.E. … Orr H.T. (J. Immunol. 1992) 2 3
  2. Gene organisation, sequence variation and isochore structure at the centromeric boundary of the human MHC. (PMID: 10452889) Stephens R. … Beck S. (J. Mol. Biol. 1999) 2 3
  3. Risk alleles for multiple sclerosis identified by a genomewide study. (PMID: 17660530) . … Hauser S.L. (N. Engl. J. Med. 2007) 48
  4. Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX. (PMID: 18204098) Hom G. … Behrens T.W. (N. Engl. J. Med. 2008) 48
  5. Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size. (PMID: 19343178) Soranzo N. … Deloukas P. (PLoS Genet. 2009) 48

Products for HLA-S Gene

Sources for HLA-S Gene

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