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HLA-K Gene(Pseudogene)

Major Histocompatibility Complex, Class I, K (Pseudogene)

GCID:
GC06P030860
GIFtS:
19
Genes Participants
UDN Logo

Aliases for HLA-K Gene

Aliases for HLA-K Gene

  • Major Histocompatibility Complex, Class I, K (Pseudogene) 2 3 5
  • HLA-70 3
  • HLA70 3
  • HLAK 3

External Ids for HLA-K Gene

Previous HGNC Symbols for HLA-K Gene

  • HLAK
  • HLA70

Previous GeneCards Identifiers for HLA-K Gene

  • GC06U990058
  • GC06P030000
  • GC06P030003
  • GC06P029896
  • GC06P029898
  • GC06P029899
  • GC06P029927
  • GC06P029946
  • GC06P030183
  • GC06P030197
  • GC06P030232
  • GC06P030348
  • GC06P030501
  • GC06P030699

Summaries for HLA-K Gene

GeneCards Summary for HLA-K Gene

HLA-K (Major Histocompatibility Complex, Class I, K (Pseudogene)) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HLA-K Gene

Genomics for HLA-K Gene

Products:

  1. Regulatory Element

Regulatory Elements for HLA-K Gene

Enhancers for HLA-K Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G029963 2 FANTOM5 Ensembl ENCODE dbSUPER 37.5 +39.8 39791 4.8 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 HLA-A HLA-K HLA-W HLA-H HLA-J HCG4P5 MICD HCG4 IFITM4P HLA-F
GH06G029940 1.3 ENCODE dbSUPER 41.6 +15.8 15802 3.7 HDGF PKNOX1 FOXA2 WRNIP1 ZFP64 ARID4B DMAP1 ZNF2 YY1 ZNF143 HLA-J HLA-T HLA-G HLA-H HLA-W HLA-K HLA-A HCG4P3 ZFP57 HLA-U
GH06G030746 2.1 FANTOM5 Ensembl ENCODE dbSUPER 23.9 +825.0 824969 9.5 CREB3L1 MLX AGO1 ZFP64 DMAP1 FEZF1 YY1 SLC30A9 ZNF143 ZNF548 IER3 DHX16 LY6G5B GTF2H4 DDX39B PPP1R10 PAIP1P1 ABCF1 HLA-K VARS2
GH06G030100 1.7 FANTOM5 Ensembl ENCODE 23.3 +175.6 175622 3.9 FOXA2 MLX ARNT AGO1 WRNIP1 ARID4B SIN3A DMAP1 SLC30A9 ZNF143 HLA-K RPL23AP1 TRIM31-AS1 HCG4 MICD ZNRD1ASP ETF1P1 PPP1R10 HCG18 PAIP1P1
GH06G029976 1.3 ENCODE dbSUPER 28 +50.5 50496 1.7 HDGF PKNOX1 CREB3L1 AGO1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 HLA-J HCG4P3 HLA-K ZFP57 HLA-H ZNRD1 HLA-A HCG4P7 MICD HCG4
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HLA-K on UCSC Golden Path with GeneCards custom track

Promoters for HLA-K Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000195344 341 1601 TBP MLX ARID4B DMAP1 RAD21 RFX5 YY1 PCBP1 KLF11 SMAD5

Genomic Location for HLA-K Gene

Chromosome:
6
Start:
29,926,459 bp from pter
End:
29,929,839 bp from pter
Size:
3,381 bases
Orientation:
Plus strand

Genomic View for HLA-K Gene

Genes around HLA-K on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HLA-K Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HLA-K Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for HLA-K Gene

Proteins for HLA-K Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for HLA-K Gene

No Post-translational modifications

No data available for DME Specific Peptides for HLA-K Gene

Domains & Families for HLA-K Gene

Gene Families for HLA-K Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HLA-K: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HLA-K Gene

Function for HLA-K Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Molecular function for HLA-K Gene

GENATLAS Biochemistry:
HLA class I-like gene K,7.0 Hind III fragment,see MHC1

Phenotypes for HLA-K Gene

GenomeRNAi human phenotypes for HLA-K:
genes like me logo Genes that share phenotypes with HLA-K: view

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HLA-K Gene

Localization for HLA-K Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HLA-K Gene

Pathways & Interactions for HLA-K Gene

SuperPathways for HLA-K Gene

PathCards logo More details on SuperPathways for HLA-K
No Data Available

Interacting Proteins for HLA-K Gene

Gene Ontology (GO) - Biological Process for HLA-K Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HLA-K Gene

Drugs & Compounds for HLA-K Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for HLA-K Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for HLA-K Gene

(6) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HLA-K Gene

No ASD Table

Relevant External Links for HLA-K Gene

GeneLoc Exon Structure for
HLA-K
ECgene alternative splicing isoforms for
HLA-K

Expression for HLA-K Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HLA-K Gene

mRNA expression in normal human tissues for HLA-K Gene
mRNA expression by GTEx for HLA-K Gene
genes like me logo Genes that share expression patterns with HLA-K: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HLA-K Gene

Orthologs for HLA-K Gene

Evolution for HLA-K Gene

ENSEMBL:
Gene Tree for HLA-K (if available)
TreeFam:
Gene Tree for HLA-K (if available)

No data available for Orthologs for HLA-K Gene

Paralogs for HLA-K Gene

No data available for Paralogs for HLA-K Gene

Variants for HLA-K Gene

Relevant External Links for HLA-K Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HLA-K

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HLA-K Gene

Disorders for HLA-K Gene

Relevant External Links for HLA-K

Genetic Association Database (GAD)
HLA-K
Human Genome Epidemiology (HuGE) Navigator
HLA-K
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HLA-K

No disorders were found for HLA-K Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HLA-K Gene

Publications for HLA-K Gene

  1. High-density SNP screening of the major histocompatibility complex in systemic lupus erythematosus demonstrates strong evidence for independent susceptibility regions. (PMID: 19851445) Barcellos L.F. … Criswell L.A. (PLoS Genet. 2009) 3 46 64
  2. Examination of four HLA class I pseudogenes. Common events in the evolution of HLA genes and pseudogenes. (PMID: 1517564) Geraghty D.E. … Hansen J.A. (J. Immunol. 1992) 2 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for HLA-K Gene

Sources for HLA-K Gene

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