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Aliases for HLA-J Gene

Aliases for HLA-J Gene

  • Major Histocompatibility Complex, Class I, J (Pseudogene) 2 3
  • HLA-CDA12 3
  • HLA-59 3
  • D6S203 3
  • CDA12 3

External Ids for HLA-J Gene

Previous HGNC Symbols for HLA-J Gene

  • HLA-CDA12
  • D6S203

Previous GeneCards Identifiers for HLA-J Gene

  • GC06U990057
  • GC06M030029
  • GC06P029857
  • GC06P029905
  • GC06P030018
  • GC06P029908
  • GC06P029909
  • GC06P029910
  • GC06P030082
  • GC06P030073
  • GC06P029979
  • GC06P029984
  • GC06P029989
  • GC06P029998
  • GC06P030190

Summaries for HLA-J Gene

Entrez Gene Summary for HLA-J Gene

  • This major histocompatibility complex gene represents a transcribed pseudogene, possibly derived from HLA-A. [provided by RefSeq, May 2010]

GeneCards Summary for HLA-J Gene

HLA-J (Major Histocompatibility Complex, Class I, J (Pseudogene)) is a Pseudogene. Among its related pathways are CDK-mediated phosphorylation and removal of Cdc6.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HLA-J Gene

Genomics for HLA-J Gene

Regulatory Elements for HLA-J Gene

Genomic Location for HLA-J Gene

30,005,971 bp from pter
30,009,956 bp from pter
3,986 bases
Plus strand

Genomic View for HLA-J Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HLA-J Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HLA-J Gene

Post-translational modifications for HLA-J Gene

No Post-translational modifications

No data available for DME Specific Peptides for HLA-J Gene

Domains for HLA-J Gene

Gene Families for HLA-J Gene

  • HLA :Histocompatibility complex

Suggested Antigen Peptide Sequences for HLA-J Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HLA-J: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for HLA-J Gene

Function for HLA-J Gene

Molecular function for HLA-J Gene

GENATLAS Biochemistry:
HLA class I-like gene J,5.9 Hind III fragment,see MHC1

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for HLA-J Gene

Localization for HLA-J Gene

Subcellular locations from

Jensen Localization Image for HLA-J Gene COMPARTMENTS Subcellular localization image for HLA-J gene
Compartment Confidence
extracellular 3
cytosol 1
peroxisome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for HLA-J Gene

Pathways for HLA-J Gene

genes like me logo Genes that share pathways with HLA-J: view

Pathways by source for HLA-J Gene

1 BioSystems pathway for HLA-J Gene

Interacting Proteins for HLA-J Gene

Gene Ontology (GO) - Biological Process for HLA-J Gene


Transcripts for HLA-J Gene

mRNA/cDNA for HLA-J Gene

(2) Selected AceView cDNA sequences:
(4) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HLA-J Gene

Major histocompatibility complex, class I, J (pseudogene):
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for HLA-J

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HLA-J Gene

No ASD Table

Relevant External Links for HLA-J Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HLA-J Gene

mRNA expression in normal human tissues for HLA-J Gene

mRNA differential expression in normal tissues according to GTEx for HLA-J Gene

This gene is overexpressed in Whole Blood (7.3).

Protein differential expression in normal tissues for HLA-J Gene

This gene is overexpressed in Skin (68.9).

Integrated Proteomics: protein expression from for HLA-J Gene

SOURCE GeneReport for Unigene cluster for HLA-J Gene Hs.720762

genes like me logo Genes that share expressions with HLA-J: view

Expression partners for HLA-J Gene

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for HLA-J Gene

Orthologs for HLA-J Gene

Evolution for HLA-J Gene

Gene Tree for HLA-J (if available)
Gene Tree for HLA-J (if available)

No data available for Orthologs for HLA-J Gene

Paralogs for HLA-J Gene

genes like me logo Genes that share paralogs with HLA-J: view

No data available for Paralogs for HLA-J Gene

Variants for HLA-J Gene

Structural Variations from Database of Genomic Variants (DGV) for HLA-J Gene

Variant ID Type Subtype PubMed ID
dgv1910e1 CNV Complex 17122850
nsv508398 CNV Loss 20534489
dgv1040e201 CNV Deletion 23290073
dgv1088e199 CNV Deletion 23128226
esv2731777 CNV Deletion 23290073
esv2641340 CNV Deletion 19546169
esv2731778 CNV Deletion 23290073

Relevant External Links for HLA-J Gene

HapMap Linkage Disequilibrium report
Locus Specific Mutation Databases (LSDB)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for HLA-J Gene

Disorders for HLA-J Gene

Relevant External Links for HLA-J

Genetic Association Database (GAD)
Human Genome Epidemiology (HuGE) Navigator

No disorders were found for HLA-J Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships and Genatlas for HLA-J Gene

Publications for HLA-J Gene

  1. HLA-J, a second inactivated class I HLA gene related to HLA-G and HLA-A. Implications for the evolution of the HLA-A-related genes. (PMID: 1602142) Messer G. … Girdlestone J. (J. Immunol. 1992) 2 3
  2. A major histocompatibility Class I locus contributes to multiple sclerosis susceptibility independently from HLA-DRB1*15:01. (PMID: 20593013) Cree B.A. … . (PLoS ONE 2010) 3 48
  3. Identification of independent risk loci for Graves' disease within the MHC in the Japanese population. (PMID: 21900946) Nakabayashi K. … Shirasawa S. (J. Hum. Genet. 2011) 3
  4. Systematic and quantitative assessment of the ubiquitin-modified proteome. (PMID: 21906983) Kim W. … Gygi S.P. (Mol. Cell 2011) 3
  5. Paradoxical downregulation of HLA-A expression by IFNI^ associated with schizophrenia and noncoding genes. (PMID: 23083632) Gu S. … Wank R. (Immunobiology 2013) 3

Products for HLA-J Gene

Sources for HLA-J Gene

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