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Aliases for HLA-F-AS1 Gene

Subcategory (RNA class) for HLA-F-AS1 Gene


Quality Score for this RNA gene is


Aliases for HLA-F-AS1 Gene

  • HLA-F Antisense RNA 1 2 3
  • HLA-F Antisense RNA 1 (Non-Protein Coding) 2

External Ids for HLA-F-AS1 Gene

ORGUL Members for HLA-F-AS1 Gene

Previous GeneCards Identifiers for HLA-F-AS1 Gene

  • GC06M029717
  • GC06M029721
  • GC06M029724
  • GC06M029729
  • GC06M029737
  • GC06M029744

Summaries for HLA-F-AS1 Gene

GeneCards Summary for HLA-F-AS1 Gene

HLA-F-AS1 (HLA-F Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HLA-F-AS1 Gene

Genomics for HLA-F-AS1 Gene

Genomic Location for HLA-F-AS1 Gene

29,726,601 bp from pter
29,749,049 bp from pter
22,449 bases
Minus strand

Genomic View for HLA-F-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HLA-F-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Regulatory Elements for HLA-F-AS1 Gene

Proteins for HLA-F-AS1 Gene

Post-translational modifications for HLA-F-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HLA-F-AS1 Gene

Domains for HLA-F-AS1 Gene

Gene Families for HLA-F-AS1 Gene

  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HLA-F-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HLA-F-AS1 Gene

Function for HLA-F-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for HLA-F-AS1 Gene

Localization for HLA-F-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HLA-F-AS1 Gene

Pathways for HLA-F-AS1 Gene

SuperPathways for HLA-F-AS1 Gene

No Data Available

Interacting Proteins for HLA-F-AS1 Gene

Gene Ontology (GO) - Biological Process for HLA-F-AS1 Gene


No data available for Pathways by source for HLA-F-AS1 Gene

Transcripts for HLA-F-AS1 Gene

mRNA/cDNA for HLA-F-AS1 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HLA-F-AS1 Gene

HLA-F antisense RNA 1:
Representative Sequences:

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate HLA-F-AS1
    • Block miRNA regulation of HLA-F-AS1 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for HLA-F-AS1

    Primer Products

    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for HLA-F-AS1 Gene

    No ASD Table

    Relevant External Links for HLA-F-AS1 Gene

    GeneLoc Exon Structure for
    ECgene alternative splicing isoforms for

    Expression for HLA-F-AS1 Gene

    mRNA expression in normal human tissues for HLA-F-AS1 Gene

    SOURCE GeneReport for Unigene cluster for HLA-F-AS1 Gene Hs.646985

    genes like me logo Genes that share expressions with HLA-F-AS1: view

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for HLA-F-AS1 Gene

    Orthologs for HLA-F-AS1 Gene

    Evolution for HLA-F-AS1 Gene

    Gene Tree for HLA-F-AS1 (if available)
    Gene Tree for HLA-F-AS1 (if available)

    No data available for Orthologs for HLA-F-AS1 Gene

    Paralogs for HLA-F-AS1 Gene

    No data available for Paralogs for HLA-F-AS1 Gene

    Variants for HLA-F-AS1 Gene

    Sequence variations from dbSNP and Humsavar for HLA-F-AS1 Gene

    SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
    rs730858 -- 29,742,851(-) TAAAG(C/T)ATATT intron-variant
    rs733841 -- 29,750,203(+) CATTT(C/T)TCTGG upstream-variant-2KB
    rs760145 -- 29,743,585(-) GGAGG(A/G)GCTAG intron-variant
    rs885941 -- 29,742,603(-) AAGCA(A/G)CAGCC intron-variant
    rs885942 -- 29,742,172(-) TGTCC(A/G)AGCTG intron-variant

    Structural Variations from Database of Genomic Variants (DGV) for HLA-F-AS1 Gene

    Variant ID Type Subtype PubMed ID
    esv25966 CNV Gain+Loss 19812545
    nsv428139 CNV Gain 18775914
    nsv508397 CNV Loss 20534489
    dgv1039e201 CNV Deletion 23290073
    nsv462673 CNV Loss 19166990
    nsv883531 CNV Loss 21882294
    nsv10809 CNV Gain 18304495
    nsv507321 CNV Insertion 20534489
    nsv883532 CNV Loss 21882294
    nsv883533 CNV Loss 21882294
    nsv883534 CNV Loss 21882294
    esv2731768 CNV Deletion 23290073
    nsv527368 CNV Loss 19592680

    Relevant External Links for HLA-F-AS1 Gene

    HapMap Linkage Disequilibrium report

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for HLA-F-AS1 Gene

    Disorders for HLA-F-AS1 Gene

    No disorders were found for HLA-F-AS1 Gene.

    No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for HLA-F-AS1 Gene

    Publications for HLA-F-AS1 Gene

    1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
    3. Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci. (PMID: 19525953) De Jager P.L. … Oksenberg J.R. (Nat. Genet. 2009) 3
    4. High-density SNP screening of the major histocompatibility complex in systemic lupus erythematosus demonstrates strong evidence for independent susceptibility regions. (PMID: 19851445) Barcellos L.F. … Criswell L.A. (PLoS Genet. 2009) 3
    5. A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants. (PMID: 22219177) Tao S. … Sun J. (Carcinogenesis 2012) 3

    Products for HLA-F-AS1 Gene

    Sources for HLA-F-AS1 Gene

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