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Aliases for HLA-F-AS1 Gene

Subcategory (RNA class) for HLA-F-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for HLA-F-AS1 Gene

  • HLA-F Antisense RNA 1 2 3 5
  • HLA-F Antisense RNA 1 (Non-Protein Coding) 2

External Ids for HLA-F-AS1 Gene

Previous GeneCards Identifiers for HLA-F-AS1 Gene

  • GC06M029717
  • GC06M029721
  • GC06M029724
  • GC06M029729
  • GC06M029737
  • GC06M029744
  • GC06M029733
  • GC06M029739
  • GC06M029835
  • GC06M029845
  • GC06M030066
  • GC06M030172

Summaries for HLA-F-AS1 Gene

GeneCards Summary for HLA-F-AS1 Gene

HLA-F-AS1 (HLA-F Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HLA-F-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HLA-F-AS1 Gene

Genomics for HLA-F-AS1 Gene

Regulatory Elements for HLA-F-AS1 Gene

Enhancers for HLA-F-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H030611 1.7 Ensembl ENCODE dbSUPER 21.3 -866.5 -866504 8.7 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC MEF2D SSRP1 MDC1 DDX39B TRIM39 PPP1R10 ABCF1 NRM DHX16 ZNRD1 GTF2H4 TRIM26
GH06H030715 1.5 ENCODE dbSUPER 22.8 -970.5 -970478 7.7 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 SP3 NFYC MDC1 LY6G5B TRIM39 DDX39B DHX16 ABCF1 PPP1R10 ZNRD1 NRM HCG18
GH06H030554 1.4 ENCODE dbSUPER 21.3 -807.6 -807576 3.6 DMAP1 YY1 SLC30A9 ZNF143 SP3 SSRP1 GLIS1 NBN NR2C1 KDM1A DDX39B TRIM39 DHX16 PPP1R10 NRM ZNRD1 MDC1 TCF19 ETF1P1 ENSG00000233892
GH06H030162 1.1 ENCODE 24.8 -414.7 -414717 2.8 ZFP64 ARID4B DMAP1 YY1 SLC30A9 ZNF302 SP3 SP5 ZC3H11A MXD4 MDC1 HCG18 GTF2H4 ZNRD1ASP TRIM39 PPP1R10 HLA-U ETF1P1 ERVK9-12 ENSG00000233892
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HLA-F-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for HLA-F-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000195328 249 1201 PKNOX1 SIN3A DMAP1 GLI4 YY1 GLIS2 ZNF207 FOS ATF7 SP3

Genomic Locations for HLA-F-AS1 Gene

Genomic Locations for HLA-F-AS1 Gene
22,449 bases
Minus strand

Genomic View for HLA-F-AS1 Gene

Genes around HLA-F-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HLA-F-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HLA-F-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HLA-F-AS1 Gene

Post-translational modifications for HLA-F-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HLA-F-AS1 Gene

Domains & Families for HLA-F-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HLA-F-AS1 Gene

Function for HLA-F-AS1 Gene

Phenotypes From GWAS Catalog for HLA-F-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HLA-F-AS1 Gene

Localization for HLA-F-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HLA-F-AS1 Gene

Pathways & Interactions for HLA-F-AS1 Gene

SuperPathways for HLA-F-AS1 Gene

No Data Available

Interacting Proteins for HLA-F-AS1 Gene

Gene Ontology (GO) - Biological Process for HLA-F-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for HLA-F-AS1 Gene

Drugs & Compounds for HLA-F-AS1 Gene

No Compound Related Data Available

Transcripts for HLA-F-AS1 Gene

mRNA/cDNA for HLA-F-AS1 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HLA-F-AS1 Gene

HLA-F antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HLA-F-AS1 Gene

No ASD Table

Relevant External Links for HLA-F-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HLA-F-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HLA-F-AS1 Gene

SOURCE GeneReport for Unigene cluster for HLA-F-AS1 Gene:

genes like me logo Genes that share expression patterns with HLA-F-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HLA-F-AS1 Gene

Orthologs for HLA-F-AS1 Gene

Evolution for HLA-F-AS1 Gene

Gene Tree for HLA-F-AS1 (if available)
Gene Tree for HLA-F-AS1 (if available)

No data available for Orthologs for HLA-F-AS1 Gene

Paralogs for HLA-F-AS1 Gene

No data available for Paralogs for HLA-F-AS1 Gene

Variants for HLA-F-AS1 Gene

Sequence variations from dbSNP and Humsavar for HLA-F-AS1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000058587 -- 29,748,528(+) GGGGA(A/G)GTGGC intron-variant
rs1000094516 -- 29,729,008(+) TTTTG(C/G)CTCTA intron-variant, utr-variant-3-prime
rs1000659537 -- 29,750,321(+) CGCTT(C/T)TGCCT downstream-variant-500B, upstream-variant-2KB
rs1000846510 -- 29,746,354(+) GATGG(A/C)CCAGT intron-variant
rs1000940653 -- 29,746,783(+) AATAC(A/G)TAAAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HLA-F-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv970102 CNV duplication 23825009
nsv970101 CNV duplication 23825009
nsv601230 CNV loss 21841781
nsv527368 CNV loss 19592680
nsv508397 CNV deletion 20534489
nsv507321 OTHER sequence alteration 20534489
nsv462673 CNV loss 19166990
nsv428139 CNV gain 18775914
nsv1144137 CNV deletion 24896259
nsv1122126 CNV deletion 24896259
nsv10809 CNV gain 18304495
nsv1074389 CNV deletion 25765185
esv2731768 CNV deletion 23290073
esv25966 CNV gain+loss 19812545
dgv992e201 CNV deletion 23290073

Relevant External Links for HLA-F-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HLA-F-AS1 Gene

Disorders for HLA-F-AS1 Gene

Relevant External Links for HLA-F-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for HLA-F-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HLA-F-AS1 Gene

Publications for HLA-F-AS1 Gene

  1. A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants. (PMID: 22219177) Tao S … Sun J (Carcinogenesis 2012) 3 60
  2. Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci. (PMID: 19525953) De Jager PL … Oksenberg JR (Nature genetics 2009) 3 60
  3. High-density SNP screening of the major histocompatibility complex in systemic lupus erythematosus demonstrates strong evidence for independent susceptibility regions. (PMID: 19851445) Barcellos LF … Criswell LA (PLoS genetics 2009) 3 60
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60
  5. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 60

Products for HLA-F-AS1 Gene

Sources for HLA-F-AS1 Gene

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