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Aliases for HLA-F-AS1 Gene

Subcategory (RNA class) for HLA-F-AS1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for HLA-F-AS1 Gene

  • HLA-F Antisense RNA 1 2 3
  • HLA-F Antisense RNA 1 (Non-Protein Coding) 2

External Ids for HLA-F-AS1 Gene

ORGUL Members for HLA-F-AS1 Gene

Summaries for HLA-F-AS1 Gene

GeneCards Summary for HLA-F-AS1 Gene

HLA-F-AS1 (HLA-F Antisense RNA 1) is a RNA Gene, and belongs to lncRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HLA-F-AS1 Gene

Genomics for HLA-F-AS1 Gene

Genomic Location for HLA-F-AS1 Gene

Start:
29,726,601 bp from pter
End:
29,749,049 bp from pter
Size:
22,449 bases
Orientation:
Minus strand

Genomic View for HLA-F-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HLA-F-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Regulatory Elements for HLA-F-AS1 Gene

Proteins for HLA-F-AS1 Gene

Post-translational modifications for HLA-F-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HLA-F-AS1 Gene

Domains for HLA-F-AS1 Gene

Gene Families for HLA-F-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs
genes like me logo Genes that share domains with HLA-F-AS1: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for HLA-F-AS1 Gene

Function for HLA-F-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for HLA-F-AS1 Gene

Localization for HLA-F-AS1 Gene

No data available for Gene Ontology (GO) - Cellular Components for HLA-F-AS1 Gene

Pathways for HLA-F-AS1 Gene

SuperPathways for HLA-F-AS1 Gene

No Data Available

Interacting Proteins for HLA-F-AS1 Gene

Gene Ontology (GO) - Biological Process for HLA-F-AS1 Gene

None

No data available for Pathways by source for HLA-F-AS1 Gene

Transcripts for HLA-F-AS1 Gene

mRNA/cDNA for HLA-F-AS1 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HLA-F-AS1 Gene

HLA-F antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HLA-F-AS1 Gene

No ASD Table

Relevant External Links for HLA-F-AS1 Gene

GeneLoc Exon Structure for
HLA-F-AS1
ECgene alternative splicing isoforms for
HLA-F-AS1

Expression for HLA-F-AS1 Gene

mRNA expression in normal human tissues for HLA-F-AS1 Gene

SOURCE GeneReport for Unigene cluster for HLA-F-AS1 Gene Hs.646985

genes like me logo Genes that share expressions with HLA-F-AS1: view

Orthologs for HLA-F-AS1 Gene

Evolution for HLA-F-AS1 Gene

ENSEMBL:
Gene Tree for HLA-F-AS1 (if available)
TreeFam:
Gene Tree for HLA-F-AS1 (if available)

No data available for Orthologs for HLA-F-AS1 Gene

Paralogs for HLA-F-AS1 Gene

No data available for Paralogs for HLA-F-AS1 Gene

Variants for HLA-F-AS1 Gene

Sequence variations from dbSNP and Humsavar for HLA-F-AS1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs730858 -- 29,742,851(-) TAAAG(C/T)ATATT intron-variant
rs733841 -- 29,750,203(+) CATTT(C/T)TCTGG upstream-variant-2KB
rs760145 -- 29,743,585(-) GGAGG(A/G)GCTAG intron-variant
rs885941 -- 29,742,603(-) AAGCA(A/G)CAGCC intron-variant
rs885942 -- 29,742,172(-) TGTCC(A/G)AGCTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HLA-F-AS1 Gene

Variant ID Type Subtype PubMed ID
esv25966 CNV Gain+Loss 19812545
nsv428139 CNV Gain 18775914
nsv508397 CNV Loss 20534489
dgv1039e201 CNV Deletion 23290073
nsv462673 CNV Loss 19166990
nsv883531 CNV Loss 21882294
nsv10809 CNV Gain 18304495
nsv507321 CNV Insertion 20534489
nsv883532 CNV Loss 21882294
nsv883533 CNV Loss 21882294
nsv883534 CNV Loss 21882294
esv2731768 CNV Deletion 23290073
nsv527368 CNV Loss 19592680

Relevant External Links for HLA-F-AS1 Gene

HapMap Linkage Disequilibrium report
HLA-F-AS1

Disorders for HLA-F-AS1 Gene

No disorders were found for HLA-F-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for HLA-F-AS1 Gene

Publications for HLA-F-AS1 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  3. Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci. (PMID: 19525953) De Jager P.L. … Oksenberg J.R. (Nat. Genet. 2009) 3
  4. High-density SNP screening of the major histocompatibility complex in systemic lupus erythematosus demonstrates strong evidence for independent susceptibility regions. (PMID: 19851445) Barcellos L.F. … Criswell L.A. (PLoS Genet. 2009) 3
  5. A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants. (PMID: 22219177) Tao S. … Sun J. (Carcinogenesis 2012) 3

Products for HLA-F-AS1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate HLA-F-AS1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for HLA-F-AS1
    • Block miRNA regulation of HLA-F-AS1 using miScript Target Protectors

    Sources for HLA-F-AS1 Gene

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