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Aliases for HLA-F-AS1 Gene

Subcategory (RNA class) for HLA-F-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HLA-F-AS1 Gene

  • HLA-F Antisense RNA 1 2 3 5
  • HLA-F Antisense RNA 1 (Non-Protein Coding) 2

External Ids for HLA-F-AS1 Gene

Previous GeneCards Identifiers for HLA-F-AS1 Gene

  • GC06M029717
  • GC06M029721
  • GC06M029724
  • GC06M029729
  • GC06M029737
  • GC06M029744
  • GC06M029733
  • GC06M029739
  • GC06M029835
  • GC06M029845

Summaries for HLA-F-AS1 Gene

GeneCards Summary for HLA-F-AS1 Gene

HLA-F-AS1 (HLA-F Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HLA-F-AS1 Gene

Genomics for HLA-F-AS1 Gene

Regulatory Elements for HLA-F-AS1 Gene

Enhancers for HLA-F-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F030715 1 ENCODE 31.3 -970.5 -970478 7.7 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 ZNF263 DDX39B LY6G5B PPP1R10 DHX16 MICA HLA-F-AS1 PAIP1P1 HCG9P5 HLA-K MICE
GH06F029722 0.7 ENCODE 15.8 +24.5 24467 4.1 ATF1 WRNIP1 SIN3A GLIS2 CBX5 ZNF143 ZNF207 FOS ZNF263 NFYC HLA-F HLA-J ZFP57 HLA-H HCG4P5 IFITM4P HLA-F-AS1 DHX16 MICE HCG4P7
GH06F030162 0.9 ENCODE 13.2 -414.7 -414717 2.8 HDGF PKNOX1 ARNT ZFP64 SIN3A ARID4B FEZF1 DMAP1 ZNF2 YY1 HCG18 GTF2H4 PPP1R10 ETF1P1 DHX16 PAIP1P1 HLA-U ZNRD1ASP HCG4P7 TCF19
GH06F030194 0.4 ENCODE 13.2 -446.3 -446279 1.6 ZFP64 ARID4B DMAP1 YY1 SLC30A9 ZNF302 SP3 SP5 MXD4 ZHX2 HCG18 GTF2H4 PPP1R10 ETF1P1 DHX16 PAIP1P1 ZNRD1ASP HCG4P7 TRIM31 GNL1
GH06F030258 0.9 ENCODE 12.8 -510.6 -510609 1.7 ATF1 ARID4B SIN3A DMAP1 ZNF48 ZNF2 ZNF143 FOS ZNF202 ZNF263 HCG18 DHX16 PPP1R10 HLA-U ETF1P1 HLA-L PAIP1P1 HCG4P7 HLA-H GTF2H4
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around HLA-F-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for HLA-F-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000487555 349 1801 PKNOX1 GLI4 DMAP1 ZNF48 YY1 GLIS2 FOS SP3 SP5 NFYC

Genomic Location for HLA-F-AS1 Gene

Chromosome:
6
Start:
29,726,601 bp from pter
End:
29,749,049 bp from pter
Size:
22,449 bases
Orientation:
Minus strand

Genomic View for HLA-F-AS1 Gene

Genes around HLA-F-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HLA-F-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HLA-F-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HLA-F-AS1 Gene

Post-translational modifications for HLA-F-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HLA-F-AS1 Gene

Domains & Families for HLA-F-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HLA-F-AS1 Gene

Function for HLA-F-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HLA-F-AS1 Gene

Localization for HLA-F-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HLA-F-AS1 Gene

Pathways & Interactions for HLA-F-AS1 Gene

SuperPathways for HLA-F-AS1 Gene

No Data Available

Interacting Proteins for HLA-F-AS1 Gene

Gene Ontology (GO) - Biological Process for HLA-F-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HLA-F-AS1 Gene

Transcripts for HLA-F-AS1 Gene

mRNA/cDNA for HLA-F-AS1 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HLA-F-AS1 Gene

HLA-F antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HLA-F-AS1 Gene

No ASD Table

Relevant External Links for HLA-F-AS1 Gene

GeneLoc Exon Structure for
HLA-F-AS1
ECgene alternative splicing isoforms for
HLA-F-AS1

Expression for HLA-F-AS1 Gene

mRNA expression in normal human tissues for HLA-F-AS1 Gene

SOURCE GeneReport for Unigene cluster for HLA-F-AS1 Gene:

Hs.646985
genes like me logo Genes that share expression patterns with HLA-F-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HLA-F-AS1 Gene

Orthologs for HLA-F-AS1 Gene

Evolution for HLA-F-AS1 Gene

ENSEMBL:
Gene Tree for HLA-F-AS1 (if available)
TreeFam:
Gene Tree for HLA-F-AS1 (if available)

No data available for Orthologs for HLA-F-AS1 Gene

Paralogs for HLA-F-AS1 Gene

No data available for Paralogs for HLA-F-AS1 Gene

Variants for HLA-F-AS1 Gene

Sequence variations from dbSNP and Humsavar for HLA-F-AS1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs10542672 -- 29,735,360(+) ATATA(-/TGTGTG)TATAT intron-variant
rs1059174 -- 29,726,650(-) GGCTA(A/G)TTCCA intron-variant, nc-transcript-variant, downstream-variant-500B
rs10645673 -- 29,731,524(+) AGATT(-/GA)GAGAG intron-variant
rs10947008 -- 29,735,373(+) TATAT(A/T)TATAT intron-variant
rs111228498 -- 29,727,055(+) TTCAA(C/T)ACTGC intron-variant, nc-transcript-variant, reference, synonymous-codon

Structural Variations from Database of Genomic Variants (DGV) for HLA-F-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv992e201 CNV deletion 23290073
esv25966 CNV gain+loss 19812545
esv2731768 CNV deletion 23290073
nsv1074389 CNV deletion 25765185
nsv10809 CNV gain 18304495
nsv1122126 CNV deletion 24896259
nsv1144137 CNV deletion 24896259
nsv428139 CNV gain 18775914
nsv462673 CNV loss 19166990
nsv507321 OTHER sequence alteration 20534489
nsv508397 CNV deletion 20534489
nsv527368 CNV loss 19592680
nsv601230 CNV loss 21841781
nsv970101 CNV duplication 23825009
nsv970102 CNV duplication 23825009

Relevant External Links for HLA-F-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HLA-F-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HLA-F-AS1 Gene

Disorders for HLA-F-AS1 Gene

Relevant External Links for HLA-F-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HLA-F-AS1

No disorders were found for HLA-F-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HLA-F-AS1 Gene

Publications for HLA-F-AS1 Gene

  1. A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants. (PMID: 22219177) Tao S. … Sun J. (Carcinogenesis 2012) 3 64
  2. Meta-analysis of genome scans and replication identify CD6, IRF8 and TNFRSF1A as new multiple sclerosis susceptibility loci. (PMID: 19525953) De Jager P.L. … Oksenberg J.R. (Nat. Genet. 2009) 3 64
  3. High-density SNP screening of the major histocompatibility complex in systemic lupus erythematosus demonstrates strong evidence for independent susceptibility regions. (PMID: 19851445) Barcellos L.F. … Criswell L.A. (PLoS Genet. 2009) 3 64
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  5. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for HLA-F-AS1 Gene

Sources for HLA-F-AS1 Gene

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