 |
 | Services
| |
 |
Aliases & Descriptions for HLA-E
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| DKFZp686P19218 2 | | EA1.2 2 | | EA2.1 2 | | HLA-6.2 2, 3 | | HLAE 3 | | MHC 2 | | OTTHUMP00000029214 2 | | QA1 2 |
| | | Descriptions |
|---|
| HLA class I histocompatibility antigen, E alpha chain 2 | | MHC HLA-E alpha-1 2 | | MHC HLA-E alpha-2.1 2 | | MHC class I antigen 2 | | MHC class I antigen E 3 | | lymphocyte antigen 2 | | major histocompatibility complex, class I, E 2 |
|
| | Search outside databases for aliases for HLA-E genePrevious GC identifers: GC06P030513 GC06P030228 GC06P030563 |
Summaries for HLA-E(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for HLA-E: HLA-E belongs to the HLA class I heavy chain paralogues. This class I molecule is a heterodimer consisting of a heavy chain and a light chain (beta-2 microglobulin). The heavy chain is anchored in the membrane. HLA-E binds a restricted subset of peptides derived from the leader peptides of other class I molecules. The heavy chain is approximately 45 kDa and its gene contains 8 exons. Exon one encodes the leader peptide, exons 2 and 3 encode the alpha1 and alpha2 domains, which both bind the peptide, exon 4 encodes the alpha3 domain, exon 5 encodes the transmembrane region, and exons 6 and 7 encode the cytoplasmic tail. [provided by RefSeq] UniProtKB/Swiss-Prot: HLAE_HUMAN, P13747Function: Preferably binds to a peptide derived from the signal sequence of most HLA-A, -B, -C and -G moleculesGene Wiki entry for HLA-E |
Genomic Location for HLA-E
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the HLA-E gene 
Entrez Gene cytogenetic band: 6p21.3 HGNC cytogenetic band: 6p21.3HLA-E Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 6 GeneLoc Exon Structure GeneLoc location for GC06P030565:
(about GC identifiers)
Start:
|
30,565,250 bp from pter |
End:
|
30,569,077 bp from pter |
Size:
|
3,828 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000006.10 NT_007592.14 NT_113891.1 NT_113893.1
| Proteins for HLA-E
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: HLAE_HUMAN, P13747 (See
protein sequence)Recommended Name: HLA class I histocompatibility antigen, alpha chain E precursor Size: 358 amino acids; 40157 Da
Subunit: Heterodimer of an alpha chain and a beta chain (beta-2-microglobulin)
Subcellular location: Membrane; Single-pass type I membrane protein
Caution: The existence of allele E*0102 (PubMed:3260916) and allele E*0104 (PubMed:1977695) is uncertain. The alleles could not be confirmed in further studies (PubMed:12445303)
PDB structures from and Proteopedia :1KPR (3D)
 1KTL (3D)
 1MHE (3D)
 2ESV (3D)
 3BZE (3D)
 3BZF (3D)
 3CDG (3D)
 3CII (3D)
 
Secondary accessions: Q30169 Q9BT83 Q9GIY7 Q9GIY8REFSEQ proteins: NP_005507.3 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
3 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for HLA-E: Assays for HLA-E: | Protein
Domains/ Families for HLA-E(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P13747
ProtoNet protein and cluster: P13747 2 Blocks protein families: IPB001039 MHC class I signature IPB003597 Immunoglobulin C-type
UniProtKB/Swiss-Prot: HLAE_HUMAN, P13747Similarity: Belongs to the MHC class I familySimilarity: Contains 1 Ig-like C1-type (immunoglobulin-like) domain | Gene Function for HLA-E
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005516
Applied Biosystems Silencer® siRNAs for HLA-E
Sigma-Aldrich siRNA for HLA-E  Sigma-Aldrich shRNA for HLA-E  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_005516                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005516                                  untagged cDNA clones in CMV expression vector (see all 2): NM_005516 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_005516
UniProtKB/Swiss-Prot: HLAE_HUMAN, P13747Function: Preferably binds to a peptide derived from the signal sequence of most HLA-A, -B, -C and -G moleculesGenatlas biochemistry entry for HLA-E:HLA class Ib,44kDa,6.2kb HindIII fragment,TAP and tapasin dependent,localized at the cell surface,harboring structural features conferring tight peptide binding specificity,correlating with the binding of an MHC class I leader peptide (see MHC1)1 Gene Ontology (GO) molecular function term (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0032393 | MHC class I receptor activity |
TAS | 3260916 | About this table | Pathways & Interactions for HLA-E
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
5 Sigma-Aldrich "Your Favorite Gene" Pathways for HLA-E (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for HLA-E 
3 Gene Ontology (GO) biological process terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0002474 | antigen processing and presentation of peptide antigen via MHC class I |
IEA | -- | | GO:0006955 | immune response |
IEA | -- | | GO:0019882 | antigen processing and presentation |
IEA | -- | About this table
|
Drugs & Compounds for HLA-E(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for HLA-E
|
Transcripts for HLA-E(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005516
Sigma-Aldrich siRNA for HLA-E  Sigma-Aldrich shRNA for HLA-E  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_005516 REFSEQ mRNAs for HLA-E gene: NM_005516.4
Applied Biosystems TaqMan ® Gene Expression Assays: NM_005516               OriGene GFP tagged cDNA clone in CMV expression vector: NM_005516                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005516                                  untagged cDNA clones in CMV expression vector (see all 2): NM_005516  Additional cDNA sequence: AB209870.1 AJ293263.1 AJ293264.1 AK098434.1 AK225048.1 AK292391.1 AK296822.1 AK298695.1 AK300906.1 AK301125.1 AK314411.1 AK316327.1 AY216681.1 AY221103.1 BC002578.2 BC004297.1 BC040479.1 BX538084.1 CR610198.1 CR619908.1 CR624610.1 CR626013.1 L78455.1 L78934.1 M20022.1 M31183.1 X56841.1 X64879.1 24/79 DOTS entries (see all 79
): DT.91764483 DT.95245447 DT.100061168 DT.91740240 DT.91764506 DT.95245445 DT.121346331 DT.95245417 DT.95245415 DT.87005617 DT.95245421 DT.121346247 DT.121345787 DT.121346421 DT.121346111 DT.101988044 DT.91671107 DT.91831076 DT.100049205 DT.121346187 DT.121345720 DT.91954591 DT.92024656 DT.100684782 24/1003 AceView cDNA sequences (see all 1003
):BQ052716 BM469085 CA439069 BQ927159 AW364302 AI936021 AA588477 BQ000024 BI818829 AA367266 BM927452 AI468136 BU617600 BQ052969 BM918109 AI685484 NM_001004349 AW084174 BQ009416 BG698804 CA392815 AI298583 BG679077 AI568109
highest scoring ESTs for HLA-E:AA866087 AK098434 AW380206 AW385691 AW388080 AW388087 AW606608 AW606611 AW797459 AW998875 Unigene Cluster for HLA-E: Major histocompatibility complex, class I, E Hs.650174 [show with all ESTs]Unigene Representative Sequence: AB209870
GeneLoc Exon Structure
|
Expression for HLA-E
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| HLA-E expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for HLA-E
1 / 2 / 3 7 probe-sets matching HLA-E gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: ACCCTTTAAC
SOURCE GeneReport for Unigene cluster: Hs.650174
Expression variation in blood from EXPOLDB for HLA-E |
Orthologs for HLA-E
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for HLA-E gene from 4 species
About this table Species with no ortholog for HLA-E | Paralogs for HLA-E(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| -- |
SNPs/Variants for HLA-E(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
| UniProtKB/Swiss-Prot: HLAE_HUMAN, P13747Polymorphism: The following alleles of E-1 are known: E*0101, E*0102, E*0103 and E*0104. The sequence shown is that of E*0101
HapMap Linkage Disequilibrium images for HLA-E (up to first 250kb)
|
Disorders & Mutations for HLA-E
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 143010
10/12 Novoseek disease relationships for HLA-E gene (see all 12
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| choriocarcinoma |
48.93 |
4 |
15578261 (1), 19239424 (1), 11884433 (1) |
| spontaneous abortion |
45.97 |
4 |
9894856 (3) |
| miscarriage recurrent |
42.96 |
5 |
16514201 (3), 11270642 (2) |
| infection chronic |
31.46 |
1 |
15751767 (1) |
| autoimmune diseases |
6.69 |
2 |
19140831 (1), 10689118 (1) |
| myeloma |
4.02 |
4 |
1402654 (1), 9574542 (1) |
| preeclampsia |
0.12 |
1 |
16806485 (1) |
| necrosis |
0.00 |
4 |
11870233 (1), 17179229 (1) |
| melanoma |
0.00 |
9 |
16920947 (5), 12618909 (2) |
| cancer |
0.00 |
4 |
18292941 (1), 15977644 (1), 17768067 (1), 16199130 (1) |
About this table
Human Gene Mutation Database: HLA-E Genetic Association Database: HLA-E Human Genome Epidemiology Navigator: HLA-E (2168 documents)
|
Medical News for HLA-E(Possibly Related Articles in
Doctor's Guide)
About This Section
| |
Publications for HLA-E (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/208 PubMed articles for HLA-E gene (see all 208
):- Isolation and nucleotide sequence of a cDNA clone encoding a novel HLA class I gene. (PubMed id 3131426)2, 3, 4 Mizuno S.... Yang S.Y. (1988)
- [Analysis on HLA-E polymorphism in Guangdong Han population] (PubMed id 15631661)1, 3, 6 Zhen Z.J....Huang S.L. (2004)
- HLA-G and HLA-E polymorphisms in an indigenous African population. The ZVITAMBO Study Group. (PubMed id 11137220)1, 3, 6 Matte C....Roger M. (2000)
- Genetic variants in nonclassical major histocompatibility complex class I human leukocyte antigen (HLA)-E and HLA-G molecules are associated with susceptibility to heterosexual acquisition of HIV-1. (PubMed id 16362895)1, 3, 6 Lajoie J....Roger M. (2006)
- Polymorphism of human leukocyte antigen-E gene in the Japanese population with or without recurrent abortion. (PubMed id 11270642)1, 3, 6 Kanai T....Taketani Y. (2001)
- Association of HLA-E polymorphism with severe bacterial infection and early transplant-related mortality in matched unrelated bone marrow transplantation. (PubMed id 16003246)1, 3, 6 Tamouza R....Charron D. (2005)
- HLA-E polymorphism in patients with nasopharyngeal carcinoma. (PubMed id 15496202)3, 6 Hirankarn N....Mutirangura A. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Distribution of human leukocyte antigens-E alleles in Thailand. (PubMed id 12929994)3, 6 Kimkong I....Pimtanothai N. (2003)
- [Analysis on HLA-E polymorphism in Shanghai Han population] (PubMed id 11774212)3, 6 Zhao L....Xu L. (2001)
|
Search for HLA-E
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing HLA-E
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing HLA-E
(According to HUGE)
About This Section
| -- |
Specialized Databases showing HLA-E(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for HLA-E(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for HLA-E:

 | |
 | | | | |
|
 |  |  |
| | | | Search Tocris compounds for HLA-E |
|
 |
 | | | |
GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
|