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HLA-DRB3 Gene

protein-coding GIFtS: 44

GC06Mf32560

major histocompatibility complex, class II, DR beta 3
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
(Previous symbol: HLA-DR3B)

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
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Aliases
HLA-DR3B ^², ³
HLA-DR52 ^², ⁵
MGC117330 ^²

Descriptions
MHC class I antigen DRB3*1 ^³
MHC class I antigen DRB3*2 ^³
MHC class II HLA-DR beta 3 chain ^²
MHC class II antigen DR beta 3 chain ^²
human leucocyte antigen DRB3 ^²
major histocompatibility complex, class II, DR beta 3 ^²

External Ids
HGNC: 4951¹
Entrez Gene: 3125²
UniProtKB: P79483³
UniProtKB: P01913³

Search outside databases for aliases for HLA-DRB3 gene

Previous GC identifers: GC06M032491 GC06M032483 GC06M032534 GC06M032079 GC06Mr32571 GC06Mc32559

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for HLA-DRB3:

HLA-DRB3 belongs to the HLA class II beta chain paralogues. This class II molecule is a heterodimer

consisting of an alpha (DRA) and a beta (DRB) chain, both anchored in the membrane. It plays a

central role in the immune system by presenting peptides derived from extracellular proteins.

Class II molecules are expressed in antigen presenting cells (APC: B lymphocytes, dendritic cells,

macrophages). The beta chain is approximately 26-28 kDa and its gene contains 6 exons. Exon one

encodes the leader peptide, exons 2 and 3 encode the two extracellular domains, exon 4 encodes the

transmembrane domain and exon 5 encodes the cytoplasmic tail. Within the DR molecule the beta

chain contains all the polymorphisms specifying the peptide binding specificities. Typing for

these polymorphisms is routinely done for bone marrow and kidney transplantation. DRB1 is

expressed at a level five times higher than its paralogues DRB3, DRB4 and DRB5. The presence of

DRB3 is linked with allelic variants of DRB1, otherwise it is omitted. There are 4 related

pseudogenes: DRB2, DRB6, DRB7, DRB8 and DRB9. [provided by RefSeq]

Gene Wiki entry for HLA-DRB3

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
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Chromosome:6
Entrez Gene cytogenetic band: 6p21.3 HGNC cytogenetic band: 6p21.3

GeneLoc gene densities for chromosome 6 GeneLoc Exon Structure

GeneLoc location for GC06Mf32560: (about GC identifiers)

Start:	32,560,407 bp from start of contig c6_QBL
End:	32,573,474 bp from start of contig c6_QBL
Size:	13,068 bases
Orientation:	minus strand

(According to ¹UniProtKB, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: 2B31_HUMAN, P79483 (See protein sequence)

Recommended Name: HLA class II histocompatibility antigen, DRB3-1 beta chain precursor

Size: 266 amino acids; 29962 Da

Subunit: Heterodimer of an alpha chain and a beta chain

Subcellular location: Membrane; Single-pass type I membrane protein

PDB structure from and Proteopedia :

2Q6W (3D)

3C5J (3D)

Secondary accessions: Q5STE0 Q95359 Q96H16

UniProtKB/Swiss-Prot: 2B32_HUMAN, P01913 (See protein sequence)

Recommended Name: HLA class II histocompatibility antigen, DRB3-2 beta chain precursor

Size: 266 amino acids; 29989 Da

Subunit: Heterodimer of an alpha chain and a beta chain

Subcellular location: Membrane; Single-pass type I membrane protein

Secondary accessions: O78049 P79663 Q29721 Q29809 Q30144 Q9MYA4 Q9MYH3 Q9MYH4 Q9TPB5 Q9TQ21

REFSEQ proteins: NP_072049.2
Human Recombinant Proteins

	Browse Drug Discovery Central at Invitrogen for human recombinant proteins
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	Recombinant Proteins from Abcam (CD13 + HLA DR, HLA DR, CD4 + HLA DR, HLA DR + HLA DP, HLA Class II DR4, HLA DR + DP + DQ, HLA DR beta)
	Human Recombinant Proteins from Abnova (HLA-DRB3)

Browse Origene for full length recombinant human proteins expressed in human HEK293 cells

5 Gene Ontology (GO) cellular component terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005886	plasma membrane	EXP	11048639 11827988 15489916 17652306
GO:0005887	integral to plasma membrane	NAS	6414998
GO:0016020	membrane	TAS	11144299
GO:0016021	integral to membrane	IEA	--
GO:0042613	MHC class II protein complex	IEA	--

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Antibodies for HLA-DRB3:

	Invitrogen Antibodies for HLA-DRB3
	Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
	Sigma-Aldrich Antibodies for HLA-DRB3
	Browse R&D Systems for Antibodies
	Antibodies from Abcam (CD13 + HLA DR, HLA DR, CD4 + HLA DR, HLA DR + HLA DP, HLA Class II DR4, HLA DR + DP + DQ, HLA DR beta), each with their Abpromise^SM
	Monoclonal and Polyclonal Antibodies from Abnova (HLA-DRB3)
	Novus Biologicals Antibodies for HLA-DRB3

Assays for HLA-DRB3:

	Browse Invitrogen for biochemical assays
	Browse Kits and Assays available from Millipore
	Browse R&D Systems for biochemical assays
	Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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Graphical View of Domain Structure for InterPro Entry P79483

Graphical View of Domain Structure for InterPro Entry P01913

ProtoNet protein and cluster: P79483

2 Blocks protein families:

IPB000353 Class II histocompatibility antigen

IPB003597 Immunoglobulin C-type

UniProtKB/Swiss-Prot: 2B31_HUMAN, P79483

Similarity: Belongs to the MHC class II family

Similarity: Contains 1 Ig-like C1-type (immunoglobulin-like) domain

UniProtKB/Swiss-Prot: 2B32_HUMAN, P01913

Similarity: Belongs to the MHC class II family

Similarity: Contains 1 Ig-like C1-type (immunoglobulin-like) domain

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (HLA-DRB3)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (HLA-DRB3)

OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_022555

Applied Biosystems Silencer® siRNAs for HLA-DRB3

Sigma-Aldrich siRNA for HLA-DRB3

Sigma-Aldrich shRNA for HLA-DRB3

Explore Sigma-Aldrich super-pooled esiRNAs

Clones:		Invitrogen Clones for HLA-DRB3
		Browse Clones for the Expression of Recombinant Proteins Available from Millipore

OriGene GFP tagged cDNA clone in CMV expression vector: NM_022555
Myc/DDK tagged cDNA clone in CMV expression vector: NM_022555
untagged cDNA clones in CMV expression vector (see all 3): BC001023

Primers:

Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers

OriGene genome-wide validated SYBR primer pairs: NM_022555

Genatlas biochemistry entry for HLA-DRB3:

HLA-DR,beta 3 chain,determining DRW52;W24,25,26

1 Gene Ontology (GO) molecular function term (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0032395	MHC class II receptor activity	TAS	11144299

About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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5/12 Sigma-Aldrich "Your Favorite Gene" Pathways for HLA-DRB3 (Your Favorite Gene powered by Ingenuity) (see all 12 )

T Helper Cell Differentiation
Autoimmune Thyroid Disease Signaling
CTLA4 Signaling in Cytotoxic T Lymphocytes
Dendritic Cell Maturation
iCOS-iCOSL Signaling in T Helper Cells

GeneDecks HLA-DRB3 for the pathways selected above

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3 Gene Ontology (GO) biological process terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0002504	antigen processing and presentation of peptide or polysaccharide antigen via MHC class II	IEA	--
GO:0006955	immune response	TAS	10609818
GO:0007165	signal transduction	NAS	8775462

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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences

Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for HLA-DRB3

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
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Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (HLA-DRB3)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (HLA-DRB3)

OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_022555

Sigma-Aldrich siRNA for HLA-DRB3

Sigma-Aldrich shRNA for HLA-DRB3

Explore Sigma-Aldrich super-pooled esiRNAs

Applied Biosystems Silencer® siRNAs:

NM_022555

REFSEQ mRNAs for HLA-DRB3 gene:

NM_022555.3

Applied Biosystems TaqMan ® Gene Expression Assays:

NM_022555

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_022555
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_022555
                                 untagged cDNA clones in CMV expression vector (see all 3): BC001023

highest scoring ESTs for HLA-DRB3:

BQ711142 CA453591 BE158271 BM691213 BM822397 BQ057417 BQ084380 BQ642821 BQ668464 BQ670854

GeneLoc Exon Structure

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
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HLA-DRB3 expression in normal and diseased human tissues

Applied Biosystems TaqMan ® Gene Expression Assays for HLA-DRB3

¹ / ² / ³

11 probe-sets matching HLA-DRB3 gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
33261_at²^{, 3}	U95-A	9	1.00	0.29	0.95	0.91	M16941	0.20	0.08	0.15	3
41723_s_at²^{, 3}	U95-A	12	1.00	0.10	0.98	0.85	M32578	0.20	0.03	0.14	3
75284_f_at²^{, 3}	U95-D	9	0.81	0.13	0.97	1.25	T88824	0.20	0.11	0.16	2
209312_x_at²	U133-A	16	1.00	0.12	--	--	--	--	--	--	--
215193_x_at²	U133-A	23	0.91	0.08	--	--	--	--	--	--	--
204670_x_at²	U133-A	16	0.82	0.10	--	--	--	--	--	--	--
208306_x_at²	U133-A	31	0.64	0.09	--	--	--	--	--	--	--
209312_x_at²	U133Plus2	16	1.00	0.12	--	--	--	--	--	--	--
215193_x_at²	U133Plus2	23	0.91	0.08	--	--	--	--	--	--	--
204670_x_at²	U133Plus2	16	0.82	0.10	--	--	--	--	--	--	--
208306_x_at²	U133Plus2	31	0.64	0.09	--	--	--	--	--	--	--

GeneDecks HLA-DRB3 for binary patterns associated with the probe-sets selected above

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Data from

(Publications) and GNF BioGPS
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CGAP SAGE TAG: --
Expression variation in blood from EXPOLDB for HLA-DRB3

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
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(According to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
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UniProtKB/Swiss-Prot: 2B32_HUMAN, P01913

Polymorphism: The following alleles of DRB3-1 are known: DRB3*0301 and DRB3*0102. The sequence

shown is that of DRB3*0101

Polymorphism: The following alleles of DRB3-2 are known: DRB3*0201, DRB3*0202, DRB3*0205,

DRB3*0206, DRB3*0207, DRB3*0208, DRB3*0209, DRB3*0210 and DRB3*0211. The sequence shown is that of

DRB3*0202

(in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
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OMIM: 612735

1 Novoseek disease relationship for HLA-DRB3 gene

Disease	Score	Articles	PubMed IDs for Articles with Shared Sentences (# sentences)
graves disease	58.26	4	8320138 (2), 1450621 (1), 1979072 (1)

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Genetic Association Database: HLA-DRB3
Human Genome Epidemiology Navigator: HLA-DRB3 (51 documents)

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via ¹Novoseek, ²HGNC, ³Entrez Gene, ⁴UniProtKB/Swiss-Prot, ⁵UniProtKB/TrEMBL, ⁶GAD, and/or ⁷PharmGKB)
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10/142 PubMed articles for HLA-DRB3 gene (see all 142 ):

HLA-DRB1 and -DRB3 allele frequencies and haplotypic associations in Koreans. (PubMed id 15041167)^{3, 6} Song E.Y....Park M.H. (2004)
HLA-DRB alleles and systemic lupus erythematosus in Jamaicans. (PubMed id 12144077)^{3, 6} Smikle M....Nicholson G. (2002)
HLA-DRB1*03, DRB1*11 or DRB1*12 and their respective DRB3 specificities in clinical variants of sarcoidosis. (PubMed id 11169267)^{3, 6} Bogunia-Kubik K....Lange A. (2001)
Identification of a new DRB3*02 allelic variant (DRB3*0209) by high- resolution sequence-based typing. (PubMed id 10958362)^{3, 4} Morabito A.... Ferrara G.B. (2000)
Identification by sequencing based typing and complete coding region analysis of three new HLA class II alleles: DRB3*0210, DRB3*0211 and DQB1*0310. (PubMed id 11098940)^{3, 4} Balas A....Vicario J.L. (2000)
A novel DRB3 allele (DRB3*0208), a new allelic variant of DRB1*1502 (DRB1*15023) and two new DQB1 (DQB1*03012 and DQB1*0614) alleles. (PubMed id 9802612)^{3, 4} Hashemi-tavoularis S.... Buyse I.M. (1998)
Diversity associated with the second expressed HLA-DRB locus in the human population. (PubMed id 9162096)^{3, 4} Robbins F.... Hartzman R.J. (1997)
Identification of a new DRB3*02 allele (DRB3*0207) by sequence-based typing. (PubMed id 9389331)^{3, 4} Voorter C.E.... van den Berg-Loonen E.M. (1997)
Identification of new DRB1*01 (DRB1*01022), DRB1*14 (DRB1*1428) and DRB3* (DRB3*0206) alleles. (PubMed id 9243765)^{3, 4} Hashemi-Tavoularis S.... Buyse I.M. (1997)
Allelic variation in the DR subregion of the human major histocompatibility complex. (PubMed id 3476943)^{3, 4} Bell J.I....McDevitt H.O. (1987)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
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(According to HUGE)
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(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
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Licensable Technologies for HLA-DRB3
(Available from WIS Yeda, Salk, Tufts)

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(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
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Products for HLA-DRB3:

TaqMan ® Gene Expression Assays

Free SNP selection tool

Invitrogen iPath Pathways	Invitrogen BLOCK-iT™ RNAi
Invitrogen Antibodies	Invitrogen Assays
Invitrogen Clones	Invitrogen Q-PCR Products
Invitrogen Human Recombinant Kinases	Invitrogen Custom Antibody and Peptide Service
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	"Your Favorite Gene" Pathways		feedback

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	Cell Culture Products		ELISAs
	Flow Cytometry Kits		Protease Activity Assays & Reagents
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	Multiplex/Array Assay Kits & Reagents		ELISpot Kits & Development Modules
	Recombinant & Natural Proteins

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	Recombinant Proteins (CD13 + HLA DR, HLA DR, CD4 + HLA DR, HLA DR + HLA DP, HLA Class II DR4, HLA DR + DP + DQ, HLA DR beta)
	Antibodies (CD13 + HLA DR, HLA DR, CD4 + HLA DR, HLA DR + HLA DP, HLA Class II DR4, HLA DR + DP + DQ, HLA DR beta)

Search OriGene for HLA-DRB3

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HLA-DRB3 Gene

protein-coding GIFtS: 44

Aliases &
Descriptions
for HLA-DRB3

Summaries
for HLA-DRB3

Genomic Location
for HLA-DRB3

Proteins
for HLA-DRB3

Protein Domains/
Families
for HLA-DRB3

Gene Function
for HLA-DRB3

Pathways & Interactions
for HLA-DRB3

Drugs & Compounds
for HLA-DRB3

Transcripts
for HLA-DRB3

Expression
for HLA-DRB3

Orthologs
for HLA-DRB3

Paralogs
for HLA-DRB3

SNPs/Variants
for HLA-DRB3

Disorders & Mutations
for HLA-DRB3

Medical News
for HLA-DRB3

Publications
for HLA-DRB3

Search for HLA-DRB3

Genome Databases showing HLA-DRB3

Other Databases showing HLA-DRB3

Specialized Databases showing HLA-DRB3

Licensable Technologies
for HLA-DRB3

Services
for HLA-DRB3

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

HLA-DRB3 Gene

protein-coding GIFtS: 44

Aliases & Descriptionsfor HLA-DRB3

Summariesfor HLA-DRB3

Genomic Locationfor HLA-DRB3

Proteinsfor HLA-DRB3

Protein Domains/Familiesfor HLA-DRB3

Gene Functionfor HLA-DRB3

Pathways & Interactionsfor HLA-DRB3

Drugs & Compoundsfor HLA-DRB3

Transcriptsfor HLA-DRB3

Expression for HLA-DRB3

Orthologsfor HLA-DRB3

Paralogsfor HLA-DRB3

SNPs/Variantsfor HLA-DRB3

Disorders & Mutationsfor HLA-DRB3

Medical Newsfor HLA-DRB3

Publicationsfor HLA-DRB3

Search for HLA-DRB3

Genome Databases showing HLA-DRB3

Other Databases showing HLA-DRB3

Specialized Databases showing HLA-DRB3

Licensable Technologiesfor HLA-DRB3

Servicesfor HLA-DRB3

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Aliases &
Descriptions
for HLA-DRB3

Summaries
for HLA-DRB3

Genomic Location
for HLA-DRB3

Proteins
for HLA-DRB3

Protein Domains/
Families
for HLA-DRB3

Gene Function
for HLA-DRB3

Pathways & Interactions
for HLA-DRB3

Drugs & Compounds
for HLA-DRB3

Transcripts
for HLA-DRB3

Expression
for HLA-DRB3

Orthologs
for HLA-DRB3

Paralogs
for HLA-DRB3

SNPs/Variants
for HLA-DRB3

Disorders & Mutations
for HLA-DRB3

Medical News
for HLA-DRB3

Publications
for HLA-DRB3

Licensable Technologies
for HLA-DRB3

Services
for HLA-DRB3