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Aliases for HLA-DQB1-AS1 Gene

Subcategory (RNA class) for HLA-DQB1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HLA-DQB1-AS1 Gene

  • HLA-DQB1 Antisense RNA 1 2 3 5
  • HLA-DQB1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • XXbac-BPG254F23.5 3

External Ids for HLA-DQB1-AS1 Gene

Previous GeneCards Identifiers for HLA-DQB1-AS1 Gene

  • GC00U933067
  • GC06P032628
  • GC06P032631

Summaries for HLA-DQB1-AS1 Gene

GeneCards Summary for HLA-DQB1-AS1 Gene

HLA-DQB1-AS1 (HLA-DQB1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HLA-DQB1-AS1 Gene

Genomics for HLA-DQB1-AS1 Gene

Regulatory Elements for HLA-DQB1-AS1 Gene

Enhancers for HLA-DQB1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F032664 1 ENCODE 48.9 +7.2 7198 5.0 HDGF PKNOX1 WRNIP1 GLI4 ZNF2 GLIS2 ZNF143 NFYC ZSCAN16 GLIS1 HLA-DQA1 HLA-DQB1 HLA-DQB1-AS1 HLA-DQB2 HLA-DRB1 HLA-DQA2 HLA-DRB6 C4A LY6G5B VPS52
GH06F032685 1.4 FANTOM5 Ensembl ENCODE 19.7 +26.2 26237 1.8 TBP TBL1XR1 ZBTB40 RFX5 CBX5 RCOR1 CREM CBFB USF2 JUNB HLA-DQB1 HLA-DQA2 HLA-DQB1-AS1 CYP21A1P HLA-DQA1 HLA-DRB6 HLA-DOB HLA-DOA HLA-DPB1 HLA-DRB5
GH06F032633 1.6 FANTOM5 Ensembl ENCODE 14.1 -22.9 -22876 7.2 HDGF WRNIP1 FEZF1 GLI4 ZNF2 ZNF121 GLIS2 ZNF416 ZNF143 TBX21 HLA-DQA1 HLA-DQB1 HLA-DQA2 HLA-DRB1 HLA-DQB2 HLA-DRB5 HLA-DRB6 CYP21A1P LOC102725019 MIR219A1
GH06F032621 1.6 FANTOM5 Ensembl ENCODE 12.7 -34.7 -34658 8.3 PKNOX1 WRNIP1 FEZF1 ZNF2 ZNF143 ZNF207 JUNB TBX21 ZNF610 NBN HLA-DRB1 HLA-DQA2 HLA-DRB6 HLA-DQB1 HLA-DRB5 HLA-DQB2 HLA-DQA1 CYP21A1P BRD2 HLA-DQB1-AS1
GH06F032670 0.7 Ensembl 26.5 +11.0 11021 0.6 HDGF SMAD5 MTA2 ZBED1 CHD7 ZBTB40 ZNF121 ZNF366 POLR2A IKZF1 HLA-DQB1 HLA-DQA2 HLA-DQB1-AS1 MTCO3P1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HLA-DQB1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for HLA-DQB1-AS1 Gene

Chromosome:
6
Start:
32,659,880 bp from pter
End:
32,660,729 bp from pter
Size:
850 bases
Orientation:
Plus strand

Genomic View for HLA-DQB1-AS1 Gene

Genes around HLA-DQB1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HLA-DQB1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HLA-DQB1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HLA-DQB1-AS1 Gene

Proteins for HLA-DQB1-AS1 Gene

Post-translational modifications for HLA-DQB1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HLA-DQB1-AS1 Gene

Domains & Families for HLA-DQB1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HLA-DQB1-AS1 Gene

Function for HLA-DQB1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HLA-DQB1-AS1 Gene

Localization for HLA-DQB1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HLA-DQB1-AS1 Gene

Pathways & Interactions for HLA-DQB1-AS1 Gene

SuperPathways for HLA-DQB1-AS1 Gene

No Data Available

Interacting Proteins for HLA-DQB1-AS1 Gene

Gene Ontology (GO) - Biological Process for HLA-DQB1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HLA-DQB1-AS1 Gene

Transcripts for HLA-DQB1-AS1 Gene

mRNA/cDNA for HLA-DQB1-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HLA-DQB1-AS1 Gene

No ASD Table

Relevant External Links for HLA-DQB1-AS1 Gene

GeneLoc Exon Structure for
HLA-DQB1-AS1
ECgene alternative splicing isoforms for
HLA-DQB1-AS1

Expression for HLA-DQB1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HLA-DQB1-AS1 Gene

genes like me logo Genes that share expression patterns with HLA-DQB1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HLA-DQB1-AS1 Gene

Orthologs for HLA-DQB1-AS1 Gene

Evolution for HLA-DQB1-AS1 Gene

ENSEMBL:
Gene Tree for HLA-DQB1-AS1 (if available)
TreeFam:
Gene Tree for HLA-DQB1-AS1 (if available)

No data available for Orthologs for HLA-DQB1-AS1 Gene

Paralogs for HLA-DQB1-AS1 Gene

No data available for Paralogs for HLA-DQB1-AS1 Gene

Variants for HLA-DQB1-AS1 Gene

Sequence variations from dbSNP and Humsavar for HLA-DQB1-AS1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1049122 -- 32,660,030(-) GAGCC(A/C/T)CTGCC nc-transcript-variant, utr-variant-3-prime
rs1049123 -- 32,660,017(-) TGCAT(A/G)GCCAG nc-transcript-variant, utr-variant-3-prime
rs1049124 -- 32,659,936(-) AAAAA(C/T)ATTAC nc-transcript-variant, utr-variant-3-prime
rs1049175 -- 32,660,224(-) AGACT(A/G)TTTTA intron-variant, utr-variant-3-prime
rs1049177 -- 32,660,214(-) AACTA(A/G)GATTG intron-variant, utr-variant-3-prime

Relevant External Links for HLA-DQB1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HLA-DQB1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HLA-DQB1-AS1 Gene

Disorders for HLA-DQB1-AS1 Gene

Relevant External Links for HLA-DQB1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HLA-DQB1-AS1

No disorders were found for HLA-DQB1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HLA-DQB1-AS1 Gene

Publications for HLA-DQB1-AS1 Gene

No publications were found for HLA-DQB1-AS1 Gene.

Products for HLA-DQB1-AS1 Gene

Sources for HLA-DQB1-AS1 Gene

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