Set Analyses:
Advanced Search

Advanced Search

 
Search By
Section (entire)
for


 



HLA-DPA3 Gene

pseudogene   GIFtS: 17
GCID: GC06M033099

Major Histocompatibility Complex, Class II, DP Alpha 3 (Pseudogene)

  Search for HLA-DPA3
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

TryGeneCards Plus

This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA

Quality score for the ORGUL clustered with this gene is 3

Aliases
Major Histocompatibility Complex, Class II, DP Alpha 3 (Pseudogene)1 2
dJ1033B10.142

External Ids:    HGNC: 193931   Entrez Gene: 2670132   Ensembl: ENSG000002373987   
ORGUL members:         

Export aliases for HLA-DPA3 gene to outside databases

Previous GC identifers: GC06U900017 GC06M033206 GC06Mo33239


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

TryGeneCards Plus

GeneCards Summary for HLA-DPA3 Gene:
HLA-DPA3 (major histocompatibility complex, class II, DP alpha 3 (pseudogene)) is a pseudogene, and is affiliated with the lncRNA class.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
About This Section

TryGeneCards Plus
Regulatory elements:
   Search for regulatory transcription factor binding sites for HLA-DPA3
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for HLA-DPA3

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat HLA-DPA3


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 6p21.3   Ensembl cytogenetic band:  6p21.32   HGNC cytogenetic band: 6p21.3

HLA-DPA3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
HLA-DPA3 gene location

GeneLoc information about chromosome 6         GeneLoc Exon Structure

GeneLoc location for GC06M033099:  view genomic region     (about GC identifiers)

Start:
33,098,974 bp from pter      End:
33,111,102 bp from pter
Size:
12,129 bases      Orientation:
minus strand

6 alternative locations:
Chr6-,NT_167249 4,579,139-4,579,285      Chr6-,NT_113891.2 4,542,760-4,542,906      Chr6-,NT_167245 4,380,280-4,380,426     
Chr6-,NT_167244 4,385,734-4,385,880      Chr6-,NT_167246 4,556,236-4,556,382      Chr6-,NT_167248 4,331,143-4,331,289     

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
About This Section

TryGeneCards Plus

UniProtKB: --


(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

TryGeneCards Plus
HGNC Gene Families:
HLA: Histocompatibility complex

  --

(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
About This Section

TryGeneCards Plus

Animal Models:
   inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for HLA-DPA3
   inGenious Targeting Laboratory: Contact us about creating complex and humanized mouse models for HLA-DPA3

   genOway customized KO model: permanent, tissue-specific or time-controlled inactivation for HLA-DPA3
   genOway customized Knockin model: humanization, point mutation, expression monitoring, etc. for HLA-DPA3

miRNA
Products:
    
Block miRNA regulation of human, mouse, rat HLA-DPA3 using miScript Target Protectors
Search for qRT-PCR Assays for microRNAs that regulate HLA-DPA3
Browse SwitchGear 3'UTR luciferase reporter plasmids
Inhib. RNA
Products:
    
Browse OriGene RNAi
Predesigned siRNA for gene silencing in human, mouse, rat HLA-DPA3

Gene Editing
Products:
DNA2.0 Custom Protein Engineering Service for HLA-DPA3

Clone
Products:
     
Browse OriGene untagged/tagged cDNA clones in CMV expression vector
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
GenScript Custom all cDNA clones Services for HLA-DPA3
Browse Sino Biological Human cDNA Clones
DNA2.0 Custom Codon Optimized Gene Synthesis Service for HLA-DPA3
Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat HLA-DPA3

Cell Line
Products:
     
GenScript Custom overexpressing Cell Line Services for HLA-DPA3
Browse ESI BIO Cell Lines and PureStem Progenitors for HLA-DPA3 
In Situ Assay
Products:
   

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for HLA-DPA3


(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
About This Section

TryGeneCards Plus
  --

(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
About This Section

TryGeneCards Plus

SuperPaths for HLA-DPA3 About    
See pathways by source

SuperPathContained pathways About
1Immune response Antigen presentation by MHC class II
Immune response Antigen presentation by MHC class II0.46
Immune response IL 22 signaling pathway0.31
G protein signaling N RAS regulation pathway0.46
2Immune response NFAT in immune response
Immune response NFAT in immune response0.55
Immune response T cell receptor signaling pathway0.50
Immune response ICOS pathway in T helper cell0.55



    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for HLA-DPA3
Interactions:

    Search GeneGlobe Interaction Network for HLA-DPA3

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
About This Section

TryGeneCards Plus
Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for HLA-DPA3



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
About This Section

TryGeneCards Plus

1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000454398
miRNA
Products:
     
Block miRNA regulation of human, mouse, rat HLA-DPA3 using miScript Target Protectors
Search for qRT-PCR Assays for microRNAs that regulate HLA-DPA3
Browse SwitchGear 3'UTR luciferase reporter plasmids
Inhib. RNA
Products:
     
Browse OriGene RNAi
Predesigned siRNA for gene silencing in human, mouse, rat HLA-DPA3
Clone
Products:
     
Browse OriGene untagged/tagged cDNA clones in CMV expression vector
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
GenScript Custom all cDNA clones Services for HLA-DPA3
DNA2.0 Custom Codon Optimized Gene Synthesis Service for HLA-DPA3
Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat HLA-DPA3
Primer
Products:
    
Browse OriGene qPCR
Search Pre-validated RT2 qPCR Primer Assays in human, mouse, rat HLA-DPA3
  QuantiTect SYBR Green Assays in human, mouse, rat HLA-DPA3
  QuantiFast Probe-based Assays in human, mouse, rat HLA-DPA3

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

TryGeneCards Plus
See probesets specificity/sensitivity at GeneAnnot
CGAP TAG: --

HLA-DPA3 Protein expression data from MOPED1, PaxDb2 and MaxQB3 --
    Custom PCR Arrays for HLA-DPA3
Primer
Products:
Browse OriGene qPCR
Search Pre-validated RT2 qPCR Primer Assays in human, mouse, rat HLA-DPA3
QuantiTect SYBR Green Assays in human, mouse, rat HLA-DPA3
QuantiFast Probe-based Assays in human, mouse, rat HLA-DPA3
In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for HLA-DPA3

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

TryGeneCards Plus
  --

ENSEMBL Gene Tree for HLA-DPA3 (if available)
TreeFam Gene Tree for HLA-DPA3 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section

TryGeneCards Plus
  --

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
About This Section

TryGeneCards Plus
Locus Specific Mutation Databases (LSDB): HLA-DPA3

Site Specific Mutation Identification with PCR Assays
Search QIAGEN SeqTarget long-range PCR primers for resequencing HLA-DPA3
DNA2.0 Custom Variant and Variant Library Synthesis for HLA-DPA3

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

TryGeneCards Plus

Find genes that share disorders with HLA-DPA3           About GenesLikeMe

Genetic Association Database (GAD): HLA-DPA3

Export disorders for HLA-DPA3 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
About This Section

TryGeneCards Plus

PubMed articles for HLA-DPA3 gene integrated from 10 sources:
(articles sorted by number of sources associating them with HLA-DPA3)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Gene organisation, sequence variation and isochore structure at the centromeric boundary of the human MHC. (PubMed id 10452889)1, 3 Stephens R....Beck S. (J. Mol. Biol. 1999)
  2. Genome-wide association with bone mass and geometry in the Framingham Heart Study. (PubMed id 17903296)4 Kiel D.P....Karasik D. (BMC Med. Genet. 2007)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

TryGeneCards Plus
 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

TryGeneCards Plus
Entrez Gene: 267013 HGNC: 19393 Ensembl:ENSG00000237398 euGenes: HUgn267013 ECgene: HLA-DPA3
H-InvDB: HLA-DPA3

(According to HUGE)
About This Section

TryGeneCards Plus
  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
About This Section

TryGeneCards Plus
NameDescription
PharmGKB entry for HLA-DPA3 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
About This Section

TryGeneCards Plus
Patent Information for HLA-DPA3 gene:
Search GeneIP for patents involving HLA-DPA3

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
About This Section

TryGeneCards Plus

 
 EMD Millipore genomic analysis products

  
 Browse Antibodies   Browse Cell Culture Products  
 Browse ELISAs   Browse Flow Cytometry Kits  
 Browse Primer Pairs   Browse Enzyme Activity Assays/Reagents  
 Browse ELISpot/FluoroSpot Kits/Development Modules   Browse TFB/Immunoprecipitation Assays  
 Browse Apoptosis Detection Kits/Reagents   Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents  
 Browse DNA Damage/Repair Kits/Reagents   Browse Luminex Assays  
 Browse Cell Selection/Detection Kits/Reagents   Browse Secondary Antibodies/Controls/Staining Reagents  
 Browse Recombinant/Natural Proteins   Browse Stem Cell Products  
 Browse cDNA Clones   Browse Proteome Profiler Antibody Arrays  
 Browse OriGene Antibodies   Browse OriGene RNAi products  
 Browse OriGene qPCR primer pairs and template standards   Browse OriGene Protein Over-expression Lysates  
 OriGene Custom Mass Spec   Browse OriGene clones  
 Browse OriGene qSTAR qPCR primer pairs   Browse OriGene full length recombinant human proteins expressed in human HEK293 cells  
 Browse OriGene ORF clones   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
 OriGene Custom Antibody Services for HLA-DPA3   OriGene Custom Protein Services for HLA-DPA3  

 
 
 Block miRNA regulation of human, mouse, rat HLA-DPA3 using miScript Target Protectors SeqTarget long-range PCR primers for resequencing HLA-DPA3
 DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat HLA-DPA3 Predesigned siRNA for gene silencing in human, mouse, rat HLA-DPA3
 QuantiFast Probe-based Assays in human, mouse, rat HLA-DPA3 QuantiTect SYBR Green Assays in human, mouse, rat HLA-DPA3
 Custom PCR Arrays for HLA-DPA3 Search Chromatin IP Primers for HLA-DPA3
 Search Pre-validated RT2 qPCR Primer Assays in human, mouse, rat HLA-DPA3 Search GeneGlobe Interaction Network for HLA-DPA3
 Search Regulatory tfbs for HLA-DPA3
 GenScript Custom Purified and Recombinant Proteins Services for HLA-DPA3 GenScript Custom cDNA clones with any tag delivered in your preferred vector Services for HLA-DPA3
 GenScript Custom Assay Services for HLA-DPA3 GenScript Custom overexpressing Cell Line Services for HLA-DPA3
 CloneReady with Over 120,000 Genes  Gene Synthesis: Any Gene in Any Vector
 Vector-based siRNA and miRNA, Ready for Transfection Gene Mutant Library, Variants up to 10^11
 Plasmid Preparation Custom Peptide Services
 Search for Antibodies & Assays

 Search Tocris compounds for HLA-DPA3
 Browse Sino Biological Proteins
 Browse Sino Biological Cell Lysates
 Browse Sino Biological cDNA Clones
 4000+ Proteins
 Search Sino Biological for antibodies, proteins & pathways
 Protein Production Services
 Transfection Reagents
 Protein A/G/L resins
 Isotyping reagents
 Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies

 Novus Biologicals
 Novus Tissue Slides
 Search for Antibodies for HLA-DPA3 at Abcam
 See all of Abcam's Antibodies, Kits and Proteins for HLA-DPA3
 Custom Antibody / Protein Production Service
 Bulk Purchasing
 Advantages of Rabbit Monoclonal antibodies
 Abcam protocols and scientific support
 Browse ProSpec Recombinant Proteins
 Browse Proteins at Cloud-Clone Corp.
 Browse Antibodies at Cloud-Clone Corp.
 Browse ELISAs at Cloud-Clone Corp.
 Browse CLIAs at Cloud-Clone Corp.



 Browse ESI BIO Cell Lines and PureStem Progenitors for HLA-DPA3
 Gene Synthesis
 Protein Engineering
 Variant Library Synthesis
 Codon Optimization
 Protein Production and Purification
 Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for HLA-DPA3
 Browse SwitchGear 3'UTR luciferase reporter plasmids for HLA-DPA3
 Browse SwitchGear Promoter luciferase reporter plasmids for HLA-DPA3
 Search ThermoFisher Antibodies for HLA-DPA3
 Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat HLA-DPA3
 inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for HLA-DPA3
 inGenious Targeting Laboratory: Contact us about creating complex and humanized mouse models for HLA-DPA3
 Search LSBio for Antibodies for HLA-DPA3
Customized transgenic rodents for:
 Humanization
 Biomarker expression
 Off-target effect monitoring
 Translational medicine
 Tissue-specific gene expresssion
 Time-controlled gene expresssion
 Browse compounds at ApexBio
 Search Addgene for plasmids for HLA-DPA3
  Search eBioscience for proteins for HLA-DPA3
  Search eBioscience for elisas for HLA-DPA3
  eBioscience FlowRNA Probe Sets
       
GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014

View Random Gene

Category
(GIFtS: )
GIFtS Group
The GeneCards human gene database gene index: 1 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

Hot genes      Disease genes      HLA-DPA3 gene at Home site.
Version: 3.12.212 17 Sep 2014
hostname: 356980-web2.xennexinc.com index build: 128 solr: 1.4