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Aliases for HLA-DPA3 Gene

Aliases for HLA-DPA3 Gene

  • Major Histocompatibility Complex, Class II, DP Alpha 3 (Pseudogene) 2 3 5
  • DJ1033B10.14 3

External Ids for HLA-DPA3 Gene

Previous GeneCards Identifiers for HLA-DPA3 Gene

  • GC06U900017
  • GC06M033206
  • GC06Mo33239
  • GC06M033099

Summaries for HLA-DPA3 Gene

GeneCards Summary for HLA-DPA3 Gene

HLA-DPA3 (Major Histocompatibility Complex, Class II, DP Alpha 3 (Pseudogene)) is a Pseudogene.

Additional gene information for HLA-DPA3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HLA-DPA3 Gene

Genomics for HLA-DPA3 Gene

Regulatory Elements for HLA-DPA3 Gene

Enhancers for HLA-DPA3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H033061 1.5 FANTOM5 ENCODE dbSUPER 10.7 +81.2 81151 0.7 FOXA2 ATF1 ETV1 CEBPG BATF ZNF316 ELK1 ZNF143 NFE2 RUNX3 HLA-DPA1 HLA-DQB1 TAP1 PSMB9 RNY4P10 RXRB SLC39A7 MIR219A1 HSD17B8 HLA-DPB1
GH06H033079 1.2 ENCODE dbSUPER 8.4 +62.6 62583 2 PKNOX1 KLF17 GLI4 ZNF2 ZNF121 GLIS2 ZNF366 ZSCAN5C ZNF391 EGR2 HLA-DPB1 HLA-DPB2 HLA-DPA1 PHF1 ENSG00000224796 RING1 RXRB HLA-DMA HLA-DPA3 RPS18
GH06H033056 0.8 ENCODE dbSUPER 10.7 +85.6 85631 2.2 POLR2A SMAD5 HLF PRDM1 CREM SPI1 RFX5 HLA-DPA1 ENSG00000224796 HSD17B8 RNY4P10 RXRB SLC39A7 MIR219A1 COL11A2 HLA-DPA3 TAP1
GH06H033111 1 Ensembl ENCODE 7.5 +29.6 29572 3.7 HDGF PKNOX1 ATF1 TBL1XR1 EBF1 ZBTB40 RFX5 RFXANK POLR2A EED HLA-DPA1 HLA-DPB1 HSD17B8 COL11A2 RPS18 ENSG00000224796 HCG24 HLA-DPB2 HLA-DPA3 HLA-DMA
GH06H033063 0.5 dbSUPER 11.5 +77.9 77899 3.5 POLR2A SMAD5 ZBED1 RUNX3 HLA-DPA1 HLA-DPA3 HLA-DPB1 HLA-DOA
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HLA-DPA3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HLA-DPA3 Gene

Genomic Locations for HLA-DPA3 Gene
chr6:33,131,197-33,143,325
(GRCh38/hg38)
Size:
12,129 bases
Orientation:
Minus strand
chr6:33,098,974-33,111,102
(GRCh37/hg19)

Genomic View for HLA-DPA3 Gene

Genes around HLA-DPA3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HLA-DPA3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HLA-DPA3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for HLA-DPA3 Gene

Post-translational modifications for HLA-DPA3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HLA-DPA3 Gene

Domains & Families for HLA-DPA3 Gene

Gene Families for HLA-DPA3 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HLA-DPA3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HLA-DPA3 Gene

Function for HLA-DPA3 Gene

Phenotypes From GWAS Catalog for HLA-DPA3 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HLA-DPA3 Gene

Localization for HLA-DPA3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HLA-DPA3 Gene

Pathways & Interactions for HLA-DPA3 Gene

SuperPathways for HLA-DPA3 Gene

No Data Available

Interacting Proteins for HLA-DPA3 Gene

Gene Ontology (GO) - Biological Process for HLA-DPA3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HLA-DPA3 Gene

Drugs & Compounds for HLA-DPA3 Gene

No Compound Related Data Available

Transcripts for HLA-DPA3 Gene

mRNA/cDNA for HLA-DPA3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HLA-DPA3 Gene

No ASD Table

Relevant External Links for HLA-DPA3 Gene

GeneLoc Exon Structure for
HLA-DPA3
ECgene alternative splicing isoforms for
HLA-DPA3

Expression for HLA-DPA3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HLA-DPA3 Gene

mRNA differential expression in normal tissues according to GTEx for HLA-DPA3 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x7.8), Brain - Cerebellum (x6.2), and Spleen (x4.6).
genes like me logo Genes that share expression patterns with HLA-DPA3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HLA-DPA3 Gene

Orthologs for HLA-DPA3 Gene

Evolution for HLA-DPA3 Gene

ENSEMBL:
Gene Tree for HLA-DPA3 (if available)
TreeFam:
Gene Tree for HLA-DPA3 (if available)

No data available for Orthologs for HLA-DPA3 Gene

Paralogs for HLA-DPA3 Gene

No data available for Paralogs for HLA-DPA3 Gene

Variants for HLA-DPA3 Gene

Relevant External Links for HLA-DPA3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HLA-DPA3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HLA-DPA3 Gene

Disorders for HLA-DPA3 Gene

Relevant External Links for HLA-DPA3

Genetic Association Database (GAD)
HLA-DPA3

No disorders were found for HLA-DPA3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HLA-DPA3 Gene

Publications for HLA-DPA3 Gene

  1. Gene organisation, sequence variation and isochore structure at the centromeric boundary of the human MHC. (PMID: 10452889) Stephens R … Beck S (Journal of molecular biology 1999) 2 3 60
  2. A genome-wide association study on chronic HBV infection and its clinical progression in male Han-Taiwanese. (PMID: 24940741) Chang SW … Tai DI (PloS one 2014) 3 60
  3. Genome-wide association with bone mass and geometry in the Framingham Heart Study. (PMID: 17903296) Kiel DP … Karasik D (BMC medical genetics 2007) 45 60

Products for HLA-DPA3 Gene

Sources for HLA-DPA3 Gene

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