HLA-DPA1 Gene
protein-coding GIFtS : 57
GCID: GC06 M033032
major histocompatibility complex, class II, DP alpha 1 (Previous symbol: HLA-DP1A )
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Aliasesfor HLA-DPA1 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Major Histocompatibility Complex, Class II, DP Alpha 1 1 2 HLADP2 5 HLA-DP1A1 2 3 PLT12 DP(W3)2 3 HLA Class II Histocompatibility Antigen, DP Alpha 1 Chain2 DP(W4)2 3 HLA Class II Histocompatibility Antigen, DP Alpha Chain2 HLASB2 3 MHC Class II Antigen2 HLA-SB Alpha Chain2 3 MHC Class II HLA-DPA1 Antigen2 MHC Class II DP3-Alpha2 3 Primed Lymphocyte Test-12 MHC Class II DPA12 3
Export aliases for HLA-DPA1 gene to outside databases Previous GC identifers: GC06U990043 GC06M033029 GC06M033079 GC06M033140 GC06M032775
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Summariesfor HLA-DPA1 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for HLA-DPA1 : HLA-DPA1 belongs to the HLA class II alpha chain paralogues. This class II molecule is a heterodimer consisting of an alpha (DPA) and a beta (DPB) chain, both anchored in the membrane. It plays a central role in the immune system by presenting peptides derived from extracellular proteins. Class II molecules are expressed in antigen presenting cells (APC: B lymphocytes, dendritic cells, macrophages). The alpha chain is approximately 33-35 kDa and its gene contains 5 exons. Exon one encodes the leader peptide, exons 2 and 3 encode the two extracellular domains, exon 4 encodes the transmembrane domain and the cytoplasmic tail. Within the DP molecule both the alpha chain and the beta chain contain the polymorphisms specifying the peptide binding specificities, resulting in up to 4 different molecules. (provided by RefSeq, Jul 2008) UniProtKB/Swiss-Prot: DPA1_HUMAN, P20036 Function : Binds peptides derived from antigens that access the endocytic route of antigen presenting cells (APC) andpresents them on the cell surface for recognition by the CD4 T-cells. The peptide binding cleft accommodates peptides of 10-30 residues. The peptides presented by MHC class II molecules are generated mostly by degradation of proteins that access the endocytic route, where they are processed by lysosomal proteases and other hydrolases. Exogenous antigens that have been endocytosed by the APC are thus readily available for presentation via MHC II molecules, and for this reason this antigen presentation pathway is usually referred to as exogenous. As membrane proteins on their way to degradation in lysosomes as part of their normal turn-over are also contained in the endosomal/lysosomal compartments, exogenous antigens must compete with those derived from endogenous components. Autophagy is also a source of endogenous peptides, autophagosomes constitutively fuse with MHC class II loading compartments. In addition to APCs, other cells of the gastrointestinal tract, such as epithelial cells, express MHC class II molecules and CD74 and act as APCs, which is an unusual trait of the GI tract. To produce a MHC class II molecule that presents an antigen, three MHC class II molecules (heterodimers of an alpha and a beta chain) associate with a CD74 trimer in the ER to form a heterononamer. Soon after the entry of this complex into the endosomal/lysosomal system where antigen processing occurs, CD74 undergoes a sequential degradation by various proteases, including CTSS and CTSL, leaving a small fragment termed CLIP (class-II-associated invariant chain peptide). The removal of CLIP is facilitated by HLA-DM via direct binding to the alpha-beta-CLIP complex so that CLIP is released. HLA-DM stabilizes MHC class II molecules until primary high affinity antigenic peptides are bound. The MHC II molecule bound to a peptide is then transported to the cell membrane surface. In B-cells, the interaction between HLA-DM and MHC class II molecules is regulated by HLA-DO. Primary dendritic cells (DCs) also to express HLA-DO. Lysosomal miroenvironment has been implicated in the regulation of antigen loading into MHC II molecules, increased acidification produces increased proteolysis and efficient peptide loading
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Genomic Viewsfor HLA-DPA1 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000006.11 NC_018917.1 NT_007592.15 NT_113891.2 NT_167244.1 NT_167245.1 NT_167246.1 NT_167247.1 NT_167248.1 NT_167249.1 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the HLA-DPA1 gene promoter: GR NRSF form 1 p300 CUTL1 MIF-1 NRSF form 2 PPAR-alpha STAT3 GR-alpha Pax-4a Other transcription factors Search SABiosciences Chromatin IP Primers for HLA-DPA1 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat HLA-DPA1
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 6p21.3 Ensembl cytogenetic band: 6p21.32 HGNC cytogenetic band: 6p21.3 HLA-DPA1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 6 GeneLoc Exon Structure
GeneLoc location for GC06M033032: view genomic region
(about GC identifiers )
Start:
33,032,346 bp from pter
End:
33,048,552 bp from pter
Size:
16,207 bases
Orientation:
minus strand
6/7 alternative locations (see all 7 ): Chr 6-,ALT_REF_LOCI_6 32,961,400-33,006,013 Chr 6-,ALT_REF_LOCI_5 32,981,090-32,989,656 Chr 6-,ALT_REF_LOCI_2 32,954,322-33,002,542 Chr 6-,ALT_REF_LOCI_3 33,010,288-33,030,358 Chr 6-,ALT_REF_LOCI_1 33,015,768-33,033,082 Chr 6-,ALT_REF_LOCI_4 33,109,993-33,118,577
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Proteinsfor HLA-DPA1 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: DPA1_HUMAN, P20036 (See
protein sequence )Recommended Name: HLA class II histocompatibility antigen, DP alpha 1 chain precursor Size : 260 amino acids; 29381 Da
Subunit : Heterodimer of an alpha and a beta subunit; also referred as MHC class II molecule. In the endoplasmicreticulum (ER) it forms a heterononamer; 3 MHC class II molecules bind to a CD74 homotrimer (also known as invariant chain or HLA class II histocompatibility antigen gamma chain). In the endosomal/lysosomal system; CD74 undergoes sequential degradation by various proteases; leaving a small fragment termed CLIP on each MHC class II molecule. MHC class II molecule interacts with HLA_DM, and HLA_DO in B-cells, in order to release CLIP and facilitate the binding of antigenic peptides
Subcellular location : Cell membrane; Single-pass type I membrane protein. Endoplasmic reticulum membrane; Single-passtype I membrane protein. Golgi apparatus, trans-Golgi network membrane; Single-pass type I membrane protein. Endosome membrane; Single-pass type I membrane protein. Lysosome membrane; Single-pass type I membrane protein. Note=The MHC class II complex transits through a number of intracellular compartments in the endocytic pathway until it reaches the cell membrane for antigen presentation
Sequence caution : Sequence=AAC64233.1; Type=Erroneous gene model prediction; Sequence=AAD42927.1; Type=Erroneous genemodel prediction;
1 PDB 3D structure from and Proteopedia for HLA-DPA1 :3LQZ (3D)
 
Secondary accessions : A9YWH7 B9UKH4 O19722 O46883 P01905 P79554 Q2Q060 Q2Q061 Q5EY03 Q5STP1 Q6DQK4Q9BCQ1 Q9TPX3 Q9XS10 Explore the universe of human proteins at neXtProt for HLA-DPA1: NX_P20036 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_P20036 HLA-DPA1 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins (3 alternative transcripts):
NP_001229453.1 NP_001229454.1 NP_291032.2 ENSEMBL proteins: ENSP00000393566 ENSP00000405500 ENSP00000412313 ENSP00000390929 ENSP00000398134 ENSP00000402872 Reactome Protein details: P20036 Human Recombinant Protein Products: Gene Ontology (GO): 5/15 cellular component terms (GO ID links to tree view) (see all 15 ): About this table
HLA-DPA1 for ontologies About GeneDecksing HLA-DPA1 Antibody Products: Assay Products for HLA-DPA1:
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Protein
Domains / Familiesfor HLA-DPA1 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
HLA-DPA1 for domains About GeneDecksing 5/7 InterPro domains/families (see all 7 ):
Graphical View of Domain Structure for InterPro Entry P20036 ProtoNet protein and cluster: P20036
2 Blocks protein families : IPB001003 MHC Class II alpha chain IPB003597 Immunoglobulin C-type UniProtKB/Swiss-Prot: DPA1_HUMAN, P20036 Similarity : Belongs to the MHC class II familySimilarity : Contains 1 Ig-like C1-type (immunoglobulin-like) domain
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Functionfor HLA-DPA1 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: DPA1_HUMAN, P20036 Function : Binds peptides derived from antigens that access the endocytic route of antigen presenting cells (APC) andpresents them on the cell surface for recognition by the CD4 T-cells. The peptide binding cleft accommodates peptides of 10-30 residues. The peptides presented by MHC class II molecules are generated mostly by degradation of proteins that access the endocytic route, where they are processed by lysosomal proteases and other hydrolases. Exogenous antigens that have been endocytosed by the APC are thus readily available for presentation via MHC II molecules, and for this reason this antigen presentation pathway is usually referred to as exogenous. As membrane proteins on their way to degradation in lysosomes as part of their normal turn-over are also contained in the endosomal/lysosomal compartments, exogenous antigens must compete with those derived from endogenous components. Autophagy is also a source of endogenous peptides, autophagosomes constitutively fuse with MHC class II loading compartments. In addition to APCs, other cells of the gastrointestinal tract, such as epithelial cells, express MHC class II molecules and CD74 and act as APCs, which is an unusual trait of the GI tract. To produce a MHC class II molecule that presents an antigen, three MHC class II molecules (heterodimers of an alpha and a beta chain) associate with a CD74 trimer in the ER to form a heterononamer. Soon after the entry of this complex into the endosomal/lysosomal system where antigen processing occurs, CD74 undergoes a sequential degradation by various proteases, including CTSS and CTSL, leaving a small fragment termed CLIP (class-II-associated invariant chain peptide). The removal of CLIP is facilitated by HLA-DM via direct binding to the alpha-beta-CLIP complex so that CLIP is released. HLA-DM stabilizes MHC class II molecules until primary high affinity antigenic peptides are bound. The MHC II molecule bound to a peptide is then transported to the cell membrane surface. In B-cells, the interaction between HLA-DM and MHC class II molecules is regulated by HLA-DO. Primary dendritic cells (DCs) also to express HLA-DO. Lysosomal miroenvironment has been implicated in the regulation of antigen loading into MHC II molecules, increased acidification produces increased proteolysis and efficient peptide loading
Genatlas biochemistry entry for HLA-DPA1 : HLA-DP,alpha chain Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for HLA-DPA1 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for HLA-DPA1 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: HLA-DPA1 (NM_033554 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for HLA-DPA1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat HLA-DPA1
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for HLA-DPA1
Gene Ontology (GO): 1 molecular function term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0032395 MHC class II receptor activity
NAS 2461352
HLA-DPA1 for ontologies About GeneDecksing
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Pathways & Interactionsfor HLA-DPA1 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Unified GeneCards pathways  - 5/28 super-pathways (see all 28 ) About this table See pathways by source Super-pathway contained gene-specific pathways 1 Allograft rejection 2 Transport of MHC II:Ii complex along Golgi to TGN 3 Translocation of ZAP-70 to Immunological synapse 4 ICos-ICosL Pathway in T-Helper Cell 5 PKC-Theta Pathway
Pathway sources See GeneCards unified pathways Show all pathways 5/6 EMD Millipore Pathways for HLA-DPA1 (see all 6 )5/12 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for HLA-DPA1 (see all 12 )5/6 GeneGo (Thomson Reuters) Pathways for HLA-DPA1 (see all 6 )5/20
Reactome Pathways for HLA-DPA1 (see all 20 )5/17
Kegg Pathways (Kegg details for HLA-DPA1) (see all 17 ):
HLA-DPA1 for pathways About GeneDecksing Interactions: SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for HLA-DPA1 STRING Interaction
Network Preview (showing 3 interactants - click image to see more details)3 Interacting proteins for HLA-DPA1 (P20036 2 , 3 ENSP00000393566 4 ) via UniProtKB, MINT, STRING , and/or I2D About this table Gene Ontology (GO): 5/8 biological process terms (GO ID links to tree view) (see all 8 ): About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0002504 antigen processing and presentation of peptide or polysaccharide antigen via MHC class II
-- -- GO:0006955 immune response
NAS 2461352 GO:0019221 cytokine-mediated signaling pathway
TAS -- GO:0019886 antigen processing and presentation of exogenous peptide antigen via MHC class II
TAS -- GO:0031295 T cell costimulation
TAS --
HLA-DPA1 for ontologies About GeneDecksing
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Drugs & Compoundsfor HLA-DPA1 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section
HLA-DPA1 for compounds About GeneDecksing Browse Tocris compounds for HLA-DPA1 1 Novoseek chemical compound relationship for HLA-DPA1 gene About this table
Compound
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
dpa 1
95
5
9154456 (3), 8225437 (1)
Search CenterWatch for drugs/clinical trials and news about HLA-DPA1 / DPA1
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Transcriptsfor HLA-DPA1 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for HLA-DPA1 gene (3 alternative transcripts): NM_001242524.1 NM_001242525.1 NM_033554.3 Unigene Cluster for HLA-DPA1:
Major histocompatibility complex, class II, DP alpha 1 Hs.347270 [show with all ESTs ] Unigene Representative Sequence: NM_001242524 9 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000419277 (uc003ocs.2 uc021ywg.1 uc021ywh.1 ) ENST00000479107 (uc010juk.3 )ENST00000437811 ENST00000448544 ENST00000453337 ENST00000476642 ENST00000463066 ENST00000417724 ENST00000428995 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for HLA-DPA1 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for HLA-DPA1 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: HLA-DPA1 (NM_033554 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for HLA-DPA1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat HLA-DPA1
Additional cDNA sequence: AK292709.1 BC009956.2 M27487.1 X00457.1
24/35 DOTS entries (see all 35 ): DT.121402866 DT.95202456
DT.449635 DT.100838953 DT.95163813 DT.100830372 DT.95163821 DT.100838951 DT.95163812 DT.100838955 DT.95163819 DT.100045889 DT.121402704 DT.91970147 DT.95106210 DT.100855331 DT.95163816 DT.121402712 DT.121402724 DT.121402761 DT.121402790 DT.121402837 DT.121402842 DT.121402868 24/699 AceView cDNA sequences (see all 699 ):
CD516536 BM767502 BG152603 CA426210 CA425192 BQ642196 BQ955105 BE765202 CA435547 BI769913 BQ446410 BQ890384 BQ057757 BQ056978 BM996250 CA308455 BQ062257 BX363746 AU139061 H66976 AI474920 BI517599 BU621846 BU617249 GeneLoc Exon Structure
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Expression for HLA-DPA1 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section HLA-DPA1 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: TGAAAACTAC
About this image HLA-DPA1 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table 1 LifeMap In Vivo Development Anatomical Compartment/Cell Tissue Anatomical Compartment
Cell Category (developmental path) Umbilical Cord Umbilical Veins Umbilical Cord Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
See HLA-DPA1 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for HLA-DPA1 SOURCE GeneReport for Unigene cluster: Hs.347270 SABiosciences Expression via Pathway-Focused PCR Array including HLA-DPA1 : Antigen Presenting Cells in human mouse rat
Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for HLA-DPA1Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse / rat HLA-DPA1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat HLA-DPA1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat HLA-DPA1 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for HLA-DPA1
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Orthologsfor HLA-DPA1 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for HLA-DPA1 gene from 2/4 species (see all 4 ) About this table
ENSEMBL Gene Tree for HLA-DPA1 (if available)TreeFam Gene Tree for HLA-DPA1 (if available)
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Paralogsfor HLA-DPA1 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for HLA-DPA1 gene HLA-DRB5 2 HLA-DQA1 2 HLA-DQB1 2 HLA-DRA 2 HLA-DOB 2 HLA-DRB1 2 HLA-DMA 2 HLA-DQB2 2 HLA-DOA 2 ENSG00000248993 2 HLA-DMB 2 HLA-DQA2 2 HLA-DPB1 2 18/41 SIMAP similar genes for HLA-DPA1 using alignment to 106 protein entries: DPA1_HUMAN (see all proteins )
(see all similar genes ):HLA-DQA2 HLA-DRA1 HLA-DQA1/DRA HLA-DQA1 DQ-A1 HLA-DRA HLA-DOA DQA1-0103 HLA-DPB1 HLA-DQ3 HLA-DQB2 HLA-DPB HLA-DQB1 HLA-DQB HLA-D HLQ-DQB1 HLA-DRB1 B2M
HLA-DPA1 for paralogs About GeneDecksing
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Genomic Variantsfor HLA-DPA1 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section UniProtKB/Swiss-Prot: DPA1_HUMAN, P20036 Polymorphism : The following alleles of DPA1 are known: DPA1*01:03, DPA1*01:04, DPA1*01:05, DPA1*01:06, DPA1*01:07,DPA1*01:08, DPA1*01:09, DPA1*01:10, DPA1*02:01, DPA1*02:02, DPA1*02:03, DPA1*02:04, DPA1*03:01, DPA1*03:02, DPA1*03:03, DPA1*04:01 The sequence shown is that of DPA1*01:03
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 6 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for HLA-DPA1 (33032346 - 33048552 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 3 variations for HLA-DPA1 3 CNVs : 69474 69477 59334 Locus Specific Mutation Databases (LSDB): HLA-DPA1
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing HLA-DPA1
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Disorders
/ Diseasesfor HLA-DPA1 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database , Novoseek ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
HLA-DPA1 for disorders About GeneDecksing
OMIM gene information: 142880
OMIM disorders : --20/47 diseases for HLA-DPA1 (see all 47 ): About MalaCards pre-eclampsia severe pre-eclampsia graft versus host disease herpetic keratitis glanzmann's thrombasthenia acute disseminated encephalomyelitis intrahepatic cholestasis intrahepatic cholestasis of pregnancy amyotrophic lateral sclerosis lupus erythematosus berylliosis lateral sclerosis cutaneous leishmaniasis systemic lupus erythematosus cholestasis celiac disease inflammatory bowel disease keratitis dilated cardiomyopathy eclampsia 2 Novoseek disease relationships for HLA-DPA1 gene About this table
Disease
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
celiac disease
39.7
2
7576003 (1), 1676703 (1)
lupus erythematosus systemic
17.7
4
8154937 (2), 2323107 (1)
Genetic Association Database (GAD): HLA-DPA1 Human Genome Epidemiology (HuGE) Navigator: HLA-DPA1 (45 documents) Export disorders for HLA-DPA1 gene to outside databases
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Publicationsfor HLA-DPA1 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for HLA-DPA1 gene, integrated from 9 sources (see all 159 ): (articles sorted by number of sources associating them with HLA-DPA1) Utopia : connect your pdf to the dynamic world of online information
Isotypic and allotypic variation of human class II histocompatibility antigen alpha-chain genes. (PubMed id 6584734) 1 , 2 , 3 Auffray C....Strominger J.L. (1984) [Studies on the association of human leukocyte antigen class II alleles with advanced hepatosplenic schistosomiasis japonica] (PubMed id 16042197) 1 , 4 Zhang J.H....Long X.C. (2005) Identification of HLA-DRPhebeta47 as the susceptibility marker of hypersensitivity to beryllium in individuals lacking the berylliosis-associated supratypic marker HLA-DPGlubeta69. (PubMed id 16098233) 1 , 4 Amicosante M....Saltini C. (2005) High-resolution sequence-based DPA1 typing identified two novel DPA1 alleles, DPA1*010303 and DPA1*0303, from a Kenyan population. (PubMed id 15663751) 1 , 2 Luo M.... Plummer F.A. (2005) HLA-DPA1 promoter haplotypes are differently distributed in southern Chinese ethnic groups. (PubMed id 15713216) 1 , 4 Liu X....Xu A. (2005) Role of HLA class II alleles in susceptibility to and protection from localized cutaneous leishmaniasis. (PubMed id 15041165) 1 , 4 Olivo-Diaz A....Gorodezky C. (2004) Genetic polymorphism and linkage disequilibrium of the HLA-DP region in Basques from Navarre (Spain). (PubMed id 15304007) 1 , 4 Perez-Miranda A.M....Pena J.A. (2004) HLA-DP polymorphism in Venezuelan Amerindians. (PubMed id 15603877) 1 , 4 Gendzekhadze K....Layrisse Z. (2004) Associations between human leukocyte antigen (HLA) alleles and very high levels of measles antibody following vaccination. (PubMed id 15121303) 1 , 4 Ovsyannikova I.G....Poland G.A. (2004) Impact of HLA class I and class II high-resolution matching on outcomes of unrelated donor bone marrow transplantation: HLA-C mismatching is associated with a strong adverse effect on transplantation outcome. (PubMed id 15191952) 1 , 4 Flomenberg N....Weisdorf D. (2004)
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External Searches for HLA-DPA1 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing HLA-DPA1 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
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Other Databases showing HLA-DPA1 gene
(According to HUGE )
About This Section --
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Specialized Databases showing HLA-DPA1 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for HLA-DPA1 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for HLA-DPA1 gene: Search GeneIP for patents involving HLA-DPA1 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor HLA-DPA1 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies Browse OriGene shRNA RFPs Browse OriGene 29mer shRNA kits in GFP-retroviral vector OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for HLA-DPA1 OriGene Protein Over-expression Lysate for HLA-DPA1 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for HLA-DPA1 OriGene 3'-UTR Clone for HLA-DPA1 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for HLA-DPA1 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for HLA-DPA1 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for HLA-DPA1 OriGene Custom Protein Services for HLA-DPA1 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat HLA-DPA1 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing HLA-DPA1 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat HLA-DPA1 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat HLA-DPA1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat HLA-DPA1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat HLA-DPA1
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for HLA-DPA1
Search ThermoFisher Antibodies for HLA-DPA1
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat HLA-DPA1
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