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HLA-DOA Gene

protein-coding   GIFtS: 60
GCID: GC06M032971

Major Histocompatibility Complex, Class II, DO Alpha


(Previous symbols: HLA-DZA, HLA-DNA)
Microbiology & Infectious Diseases Congress
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Major Histocompatibility Complex, Class II, DO Alpha1 2     HLA-D0-alpha2
HLA-DNA1 2 3 5     HLADZ2
HLA-DZA1 2 3     HLA Class II Histocompatibility Antigen, DO Alpha Chain2
MHC Class II Antigen DOA2 3     Lymphocyte Antigen2
MHC DN-Alpha2 3     Major Histocompatibility Complex, Class II, DN Alpha2
MHC DZ Alpha2 3     

External Ids:    HGNC: 49361   Entrez Gene: 31112   Ensembl: ENSG000002042527   OMIM: 1429305   UniProtKB: P063403   

Export aliases for HLA-DOA gene to outside databases

Previous GC identifers: GC06M032976 GC06M033020 GC06M033081 GC06M032714


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for HLA-DOA Gene:
HLA-DOA belongs to the HLA class II alpha chain paralogues. HLA-DOA forms a heterodimer with HLA-DOB. The
heterodimer, HLA-DO, is found in lysosomes in B cells and regulates HLA-DM-mediated peptide loading on MHC class
II molecules. In comparison with classical HLA class II molecules, this gene exhibits very little sequence
variation, especially at the protein level. (provided by RefSeq, Jul 2008)

GeneCards Summary for HLA-DOA Gene:
HLA-DOA (major histocompatibility complex, class II, DO alpha) is a protein-coding gene. Diseases associated with HLA-DOA include alopecia universalis, and vogt-koyanagi-harada disease. GO annotations related to this gene include MHC class II receptor activity. An important paralog of this gene is HLA-DRB5.

UniProtKB/Swiss-Prot: DOA_HUMAN, P06340
Function: Important modulator in the HLA class II restricted antigen presentation pathway by interaction with the
HLA-DM molecule in B-cells. Modifies peptide exchange activity of HLA-DM

Gene Wiki entry for HLA-DOA Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000006.12  NT_007592.16  NT_113891.3  NT_167245.2  NT_167246.2  NT_167247.2  NT_167248.2  NT_167249.2  
NC_018917.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the HLA-DOA gene promoter:
         USF1   AML1a   SREBP-1c   HNF-4alpha1   Roaz   SREBP-1b   PPAR-gamma1   SREBP-1a   USF-1   PPAR-gamma2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidHLA-DOA promoter sequence
   Search Chromatin IP Primers for HLA-DOA

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat HLA-DOA


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 6p21.3   Ensembl cytogenetic band:  6p21.32   HGNC cytogenetic band: 6p21.3

HLA-DOA Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
HLA-DOA gene location

GeneLoc information about chromosome 6         GeneLoc Exon Structure

GeneLoc location for GC06M032971:  view genomic region     (about GC identifiers)

Start:
32,971,955 bp from pter      End:
32,977,389 bp from pter
Size:
5,435 bases      Orientation:
minus strand

6 alternative locations:
Chr6-,NT_113891.2 4,416,456-4,421,886      Chr6-,NT_167249 4,452,675-4,458,104      Chr6-,NT_167248 4,204,052-4,209,482     
Chr6-,NT_167245 4,253,308-4,258,737      Chr6-,NT_167247 4,308,822-4,314,252      Chr6-,NT_167246 4,429,151-4,434,580     

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB/Swiss-Prot: DOA_HUMAN, P06340 (See protein sequence)
Recommended Name: HLA class II histocompatibility antigen, DO alpha chain precursor  
Size: 250 amino acids; 27599 Da
Subunit: Heterodimer of an alpha chain (DOA) and a beta chain (DOB). Forms a heterotetrameric complex with an
HLA-DM molecule during intracellular transport in endosomal/lysosomal compartments in B-cells
1 PDB 3D structure from and Proteopedia for HLA-DOA:
4I0P (3D)    
Secondary accessions: Q58HU0 Q58HU1 Q5STC7 Q9TQC6 Q9TQC7 Q9TQC8 Q9TQC9 Q9TQD0 Q9TQD1 Q9TQD2
Q9TQD3

Explore the universe of human proteins at neXtProt for HLA-DOA: NX_P06340

Explore proteomics data for HLA-DOA at MOPED

Post-translational modifications: 

  • Glycosylation2 at Asn104, Asn144

  • See HLA-DOA Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_002110.1  
    ENSEMBL proteins: 
     ENSP00000229829   ENSP00000363946   ENSP00000403896  
    Reactome Protein details: P06340

    HLA-DOA Human Recombinant Protein Products:

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    Browse Proteins at Cloud-Clone Corp.

    HLA-DOA Antibody Products:

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    HLA: Histocompatibility complex
    C1SET: Immunoglobulin superfamily / C1-set domain containing

    Selected InterPro protein domains (see all 7):
     IPR001003 MHC_II_a_N
     IPR011162 MHC_I/II-like_Ag-recog
     IPR013783 Ig-like_fold
     IPR014745 MHC_II_a/b_N
     IPR003597 Ig_C1-set

    Graphical View of Domain Structure for InterPro Entry P06340

    ProtoNet protein and cluster: P06340

    2 Blocks protein domains:
    IPB001003 MHC Class II alpha chain
    IPB003597 Immunoglobulin C-type


    UniProtKB/Swiss-Prot: DOA_HUMAN, P06340
    Similarity: Belongs to the MHC class II family
    Similarity: Contains 1 Ig-like C1-type (immunoglobulin-like) domain


    HLA-DOA for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: DOA_HUMAN, P06340
    Function: Important modulator in the HLA class II restricted antigen presentation pathway by interaction with the
    HLA-DM molecule in B-cells. Modifies peptide exchange activity of HLA-DM

         Gene Ontology (GO): 2 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515protein binding ----
    GO:0032395MHC class II receptor activity TAS3000765
         
    HLA-DOA for ontologies           About GeneDecksing


    Phenotypes:
         2 MGI mutant phenotypes (inferred from 2 alleles(MGI details for H2-Oa):
     hematopoietic system  immune system 

    HLA-DOA for phenotypes           About GeneDecksing

    Animal Models:
         MGI mouse knock-out H2-OaH2-tm1Lkar for HLA-DOA

       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for HLA-DOA
       inGenious Targeting Laboratory: Contact us about creating complex and humanized mouse models for HLA-DOA

       genOway customized KO model: permanent, tissue-specific or time-controlled inactivation for HLA-DOA
       genOway customized Knockin model: humanization, point mutation, expression monitoring, etc. for HLA-DOA

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    6 qRT-PCR Assays for microRNAs that regulate HLA-DOA:
    hsa-miR-203 hsa-miR-3132 hsa-miR-922 hsa-miR-4251 hsa-miR-532-3p hsa-miR-3921
    SwitchGear 3'UTR luciferase reporter plasmidHLA-DOA 3' UTR sequence
    Inhib. RNA
    Products:
        
    OriGene RNAi products in human, mouse, rat for HLA-DOA
    Predesigned siRNA for gene silencing in human, mouse, rat HLA-DOA

    Gene Editing
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    GenScript: all cDNA clones in your preferred vector: HLA-DOA (NM_002119)
    Sino Biological Human cDNA Clone for HLA-DOA
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for HLA-DOA
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat HLA-DOA

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    In Situ Assay
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for HLA-DOA


    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    DOA_HUMAN, P06340: Endosome membrane; Single-pass type I membrane protein. Lysosome membrane; Single-pass type
    I membrane protein. Note=Complexes with HLA-DM molecule during intracellular transport and in endosomal/lysosomal
    compartments. Heterotetramerization is necessary to exit the ER
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    endosome5
    lysosome5
    vacuole5
    plasma membrane4
    extracellular2
    endoplasmic reticulum1
    mitochondrion1
    peroxisome1

    Gene Ontology (GO): Selected cellular component terms (see all 6):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005765lysosomal membrane TAS--
    GO:0005886plasma membrane TAS3000765
    GO:0010008endosome membrane IEA--
    GO:0016020membrane ----
    GO:0016021integral component of membrane IEA--

    HLA-DOA for ontologies           About GeneDecksing


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    SuperPaths for HLA-DOA About   (see all 20)  
    See pathways by source

    SuperPathSelected contained pathways About (see all per SuperPath)
    1Allograft rejection
    Allograft rejection0.86
    Intestinal immune network for IgA production0.41
    Allograft Rejection0.86
    Viral myocarditis0.40
    Type I diabetes mellitus0.69
    CTL Mediated Apoptosis0.38
    Graft-versus-host disease0.65
    THC Differentiation Pathway0.38
    2Immune response Antigen presentation by MHC class II
    Immune response Antigen presentation by MHC class II0.46
    Immune response IL 22 signaling pathway0.31
    G protein signaling N RAS regulation pathway0.46
    3ICos-ICosL Pathway in T-Helper Cell
    ICos-ICosL Pathway in T-Helper Cell0.66
    Calcium Mediated T-Cell Apoptosis0.31
    CD28 Signaling in T-Helper Cell0.66
    4TCR Signaling (Qiagen)
    PKC-Theta Pathway0.68
    ITK and TCR Signaling0.54
    TCR Signaling0.68
    5Immune response NFAT in immune response
    Immune response NFAT in immune response0.55
    Immune response T cell receptor signaling pathway0.50
    Immune response ICOS pathway in T helper cell0.55

    Pathways by source                                                                                                                                                                 See SuperPaths
    Show all pathways

    Selected Downloadable PowerPoint Slides of GeneGlobe Pathway Central Maps for HLA-DOA (see all 12)
        THC Differentiation Pathway
    Calcium Mediated T-Cell Apoptosis
    IL-4 Pathway
    ICos-ICosL Pathway in T-Helper Cell
    CDC42 Pathway

    Selected GeneGo (Thomson Reuters) Pathways for HLA-DOA (see all 6)
        Immune response Antigen presentation by MHC class II
    Immune response ICOS pathway in T-helper cell
    Immune response T cell receptor signaling pathway
    Immune response IL-22 signaling pathway
    G-protein signaling N-RAS regulation pathway

    1 BioSystems Pathway for HLA-DOA
        Allograft Rejection


    1 Reactome Pathway for HLA-DOA
        MHC class II antigen presentation


    Selected Kegg Pathways  (Kegg details for HLA-DOA) (see all 20):
        Phagosome
    Cell adhesion molecules (CAMs)
    Antigen processing and presentation
    Intestinal immune network for IgA production
    Type I diabetes mellitus


    HLA-DOA for pathways           About GeneDecksing

        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for HLA-DOA
    Interactions:

        Search GeneGlobe Interaction Network for HLA-DOA

    STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

    2 Interacting proteins for HLA-DOA (P063403 ENSP000002298294) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    HLA-DMAENSP000003639764STRING: ENSP00000363976
    --Q6ICR93I2D: score=2 
    About this table

    Gene Ontology (GO): Selected biological process terms (see all 6):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0002504antigen processing and presentation of peptide or polysaccharide antigen via MHC class II ----
    GO:0006955immune response IEA--
    GO:0007165signal transduction TAS3000765
    GO:0019882antigen processing and presentation ----
    GO:0019886antigen processing and presentation of exogenous peptide antigen via MHC class II TAS--

    HLA-DOA for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for HLA-DOA (DOA)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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    REFSEQ mRNAs for HLA-DOA gene: 
    NM_002119.3  

    Unigene Cluster for HLA-DOA:

    Major histocompatibility complex, class II, DO alpha
    Hs.631991  [show with all ESTs]
    Unigene Representative Sequence: NM_002119
    7 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000229829(uc003ocr.3 uc010juj.3 uc010jui.3) ENST00000490305
    ENST00000485901 ENST00000495532 ENST00000374813 ENST00000467465 ENST00000450833

    Congresses - knowledge worth sharing:
    European Congress of Clinical Microbiology and Infectious Diseases (ECCMID) 10 - 13 May 2014

    miRNA
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    6 qRT-PCR Assays for microRNAs that regulate HLA-DOA:
    hsa-miR-203 hsa-miR-3132 hsa-miR-922 hsa-miR-4251 hsa-miR-532-3p hsa-miR-3921
    SwitchGear 3'UTR luciferase reporter plasmidHLA-DOA 3' UTR sequence
    Inhib. RNA
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    GenScript: all cDNA clones in your preferred vector: HLA-DOA (NM_002119)
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    Primer
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      QuantiTect SYBR Green Assays in human, mouse, rat HLA-DOA
      QuantiFast Probe-based Assays in human, mouse, rat HLA-DOA

    Additional mRNA sequence: 

    AJ420585.1 AK290714.1 AK301404.1 AK310153.1 AK313551.1 BC013183.1 M26039.1 M29335.1 
    M31525.1 M38054.1 M38056.1 

    6 DOTS entries:

    DT.409221  DT.40115327  DT.86847068  DT.92422220  DT.86847067  DT.95201674 

    Selected AceView cDNA sequences (see all 121):

    BQ182553 AI096854 AA721167 AI357064 CK300899 AI435220 AA663927 AA935283 
    BQ016622 M38056 AI886812 AI701344 CA437002 AI372080 M38054 AI474796 
    BX108461 CB529458 M31525 BG758063 AA827172 AI627561 AA485172 AI866383 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    HLA-DOA expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GTGGCTCGCA
    HLA-DOA Expression
    About this image


    HLA-DOA expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     selected tissues (see all 5) fully expand
     
     Neural Tube (Nervous System)    fully expand to see all 3 entries
             Metencephalon
     
     Inner Cell Mass (Early Embryonic Tissues)    fully expand to see all 2 entries
             Human embryonic stem cells (family)
     
     Umbilical Cord (Extraembryonic Tissues)
             Umbilical Veins
     
     Blood (Hematopoietic System)
             Mature B-Cells Peripheral Blood
     
     Brain (Nervous System)
             Medulla Oblongata
    HLA-DOA Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    HLA-DOA Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.631991
        Custom PCR Arrays for HLA-DOA
    Primer
    Products:
    OriGene qPCR primer pairs and template standards for HLA-DOA
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    QuantiFast Probe-based Assays in human, mouse, rat HLA-DOA
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for HLA-DOA

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for HLA-DOA gene from Selected species (see all 8)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia H2-Oa1 , 5 histocompatibility 2, O region alpha locus1, 5 80.13(n)1
    73.2(a)1
      17 (17.98 cM)5
    150011  NM_008206.21  NP_032232.21 
     340923405 
    lizard
    (Anolis carolinensis)
    Reptilia --
    --
    Uncharacterized protein
    48(a)
    46(a)
    many ↔ many
    many ↔ many
    GL343775.1(20845-38928)
    GL343809.1(2435-3996)
    zebrafish
    (Danio rerio)
    Actinopterygii si:busm1-48c11.36
    si:busm1-48c11.3
    28(a)
    many ↔ many
    8(36283500-36286998) ENSDARG00000055441


    ENSEMBL Gene Tree for HLA-DOA (if available)
    TreeFam Gene Tree for HLA-DOA (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section

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    Paralogs for HLA-DOA gene
    HLA-DRB52  HLA-DQA12  HLA-DPA12  HLA-DQB12  HLA-DRA2  HLA-DRB12  HLA-DOB2  HLA-DMA2  
    HLA-DQB22  ENSG000002489932  HLA-DMB2  HLA-DQA22  HLA-DPB12  
    Selected SIMAP similar genes for HLA-DOA using alignment to 3 protein entries:     DOA_HUMAN (see all proteins) (see all similar genes):
    DQ-A1    HLA-DQA1/DRA    HLA-DPA1    HLA-DQA2    HLA-DQA1    HLA-DRA1
    DQA1-0103    HLA-DRA    HLA-DQB    HLA DRB4    HLA-DRB4*0102    HLA-DRB4
    HLA-DRB5    HLA-DRB1    HLA-DQB1    HLA    IGLC6    HLA-DMA

    HLA-DOA for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Polymorphic Variants from UniProtKB/Swiss-Prot
    DOA_HUMAN, P06340: The following alleles of DOA are known: DOA*01:01, DOA*01:02 and DOA*01:03. The sequence shown is
    that of DOA*01:01


    Selected SNPs for HLA-DOA (see all 271)    About this table    
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 6 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs92802591,2
    C--32716495(+) TAGGG-/AAAAGT 1 -- ut312Minor allele frequency- A:0.25NA 4
    rs2021906371,2
    C--32718523(-) AGACTA/C/G/
            
    CCGCC
    4 T P A S mis10--------
    rs2000722281,2
    C--32718542(-) CTTCCA/C/G/
            
    CACAT
    4 E D mis1 syn10--------
    rs1995386431,2
    C--32718543(-) TCTTCA/C/G/
            
    CCACA
    4 D A G V mis10--------
    rs2011781111,2
    C--32718544(-) CTCTTA/C/G/
            
    ACCAC
    4 N H D Y mis10--------
    rs172205351,2
    C,F--32887724(+) AGAGCG/ATGACC 1 -- ds50011Minor allele frequency- A:0.04MN 56
    rs1874059651,2
    C--32887750(+) AGGGAA/GACTGG 1 -- ds50010--------
    rs1167835961,2
    C,F--32887776(+) AGGATT/CTGATG 1 -- ds50011Minor allele frequency- C:0.01WA 118
    rs172141341,2
    C,F,H--32887798(+) TAGGAG/AAGATG 1 -- ds50014Minor allele frequency- A:0.02MN NS NA 460
    rs31289311,2
    C,F,O,A,H--32887824(+) GTAGGG/ATGACC 1 -- ds500131Minor allele frequency- A:0.35NS EA MN NA WA CSA 3413

    HapMap Linkage Disequilibrium report for HLA-DOA (32971955 - 32977389 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 1 variation for HLA-DOA:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv483081CNV Loss15286789

    Human Gene Mutation Database (HGMD): HLA-DOA
    Locus Specific Mutation Databases (LSDB): HLA-DOA

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing HLA-DOA
    DNA2.0 Custom Variant and Variant Library Synthesis for HLA-DOA

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 142930    OMIM disorders: --

    Selected diseases for HLA-DOA (see all 24):    
    About MalaCards
    alopecia universalis    vogt-koyanagi-harada disease    toxoplasmosis    alopecia
    myocarditis    autoimmune thyroiditis    leishmaniasis    hiv-1
    kaposi's sarcoma    graft versus host disease    systemic lupus erythematosus    influenza
    tuberculosis    sarcoma    lupus erythematosus    asthma
    herpes simplex    diabetes mellitus    rheumatoid arthritis    thyroiditis


    HLA-DOA for disorders           About GeneDecksing

    1 Novoseek inferred disease relationship for HLA-DOA gene    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    hla-do 97.7 1 11823510 (1)

    Genetic Association Database (GAD): HLA-DOA
    Human Genome Epidemiology (HuGE) Navigator: HLA-DOA (12 documents)

    Export disorders for HLA-DOA gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for HLA-DOA gene, integrated from 10 sources (see all 80):
    (articles sorted by number of sources associating them with HLA-DOA)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The HLA-DNA (DZA) gene is correctly expressed as a 1.1 kb mature mRNA transcript. (PubMed id 2370084)1, 2, 3 Young J.A. and Trowsdale J. (Immunogenetics 1990)
    2. Limited polymorphism in the HLA-DOA gene. (PubMed id 10323340)1, 2, 9 Naruse T.K.... Inoko H. (Tissue Antigens 1999)
    3. New gene functions in megakaryopoiesis and platelet formation. (PubMed id 22139419)1, 4 Gieger C....Soranzo N. (Nature 2011)
    4. Genetic association of htSNPs across the major histocompatibility complex with rheumatoid arthritis in an African-American population. (PubMed id 19741715)1, 4 Reynolds R.J....Bridges S.L. (Genes Immun. 2010)
    5. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PubMed id 20628086)1, 4 Bailey S.D....Anand S. (Diabetes Care 2010)
    6. Exploring the diabetogenicity of the HLA-B18-DR3 CEH: independent association with T1D genetic risk close to HLA-DOA. (PubMed id 19458622)1, 4 Santin I....Bilbao J.R. (Genes Immun. 2009)
    7. High-density SNP screening of the major histocompatibility complex in systemic lupus erythematosus demonstrates strong evidence for independent susceptibility regions. (PubMed id 19851445)1, 4 Barcellos L.F....Criswell L.A. (PLoS Genet. 2009)
    8. Genetic variants in major histocompatibility complex-linked genes associate with pediatric liver transplant rejection. (PubMed id 18639552)1, 4 Sindhi R....Ferrell R. (Gastroenterology 2008)
    9. Identification of four novel HLA-DOA alleles, DOA*010106, DOA*0102, DOA*0103, and DOA*0104N, by sequence-based typing. (PubMed id 16101837)1, 2 Moon S.-M.... Oh B. (Tissue Antigens 2005)
    10. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 3111 HGNC: 4936 AceView: HLA-DOA Ensembl:ENSG00000204252 euGenes: HUgn3111
    ECgene: HLA-DOA Kegg: 3111 H-InvDB: HLA-DOA

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for HLA-DOA Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for HLA-DOA gene:
    Search GeneIP for patents involving HLA-DOA

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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