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Aliases for HKDC1 Gene

Aliases for HKDC1 Gene

  • Hexokinase Domain Containing 1 2 3 5
  • EC 4 63
  • Hexokinase Domain-Containing Protein 1 4
  • EC 2.7.1 63

External Ids for HKDC1 Gene

Previous GeneCards Identifiers for HKDC1 Gene

  • GC10U900457
  • GC10P070651
  • GC10P070980
  • GC10P064980

Summaries for HKDC1 Gene

GeneCards Summary for HKDC1 Gene

HKDC1 (Hexokinase Domain Containing 1) is a Protein Coding gene. Among its related pathways are Carbon metabolism and Galactose metabolism. GO annotations related to this gene include phosphotransferase activity, alcohol group as acceptor and glucokinase activity. An important paralog of this gene is HK2.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HKDC1 Gene

Genomics for HKDC1 Gene

Regulatory Elements for HKDC1 Gene

Enhancers for HKDC1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around HKDC1 on UCSC Golden Path with GeneCards custom track

Promoters for HKDC1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around HKDC1 on UCSC Golden Path with GeneCards custom track

Genomic Location for HKDC1 Gene

69,220,303 bp from pter
69,267,559 bp from pter
47,257 bases
Plus strand

Genomic View for HKDC1 Gene

Genes around HKDC1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HKDC1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HKDC1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HKDC1 Gene

Proteins for HKDC1 Gene

  • Protein details for HKDC1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Putative hexokinase HKDC1
    Protein Accession:
    Secondary Accessions:
    • B5MDN9
    • Q2TB91
    • Q5VTC7
    • Q7Z373
    • Q8WU37
    • Q96EH2
    • Q9H5Y9

    Protein attributes for HKDC1 Gene

    917 amino acids
    Molecular mass:
    102545 Da
    Quaternary structure:
    No Data Available
    • Sequence=AAH21278.1; Type=Frameshift; Positions=457; Evidence={ECO:0000305}; Sequence=BAB15478.1; Type=Frameshift; Positions=345; Evidence={ECO:0000305};

    Alternative splice isoforms for HKDC1 Gene


neXtProt entry for HKDC1 Gene

Proteomics data for HKDC1 Gene at MOPED

Post-translational modifications for HKDC1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for HKDC1 Gene

ENSEMBL proteins:
REFSEQ proteins:

Domains & Families for HKDC1 Gene

Protein Domains for HKDC1 Gene

Suggested Antigen Peptide Sequences for HKDC1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Contains 2 hexokinase domains.
  • Belongs to the hexokinase family.
  • Contains 2 hexokinase domains.
  • Belongs to the hexokinase family.
genes like me logo Genes that share domains with HKDC1: view

No data available for Gene Families for HKDC1 Gene

Function for HKDC1 Gene

Molecular function for HKDC1 Gene

UniProtKB/Swiss-Prot CatalyticActivity:
ATP + D-hexose = ADP + D-hexose 6-phosphate.

Enzyme Numbers (IUBMB) for HKDC1 Gene

Gene Ontology (GO) - Molecular Function for HKDC1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004340 glucokinase activity IBA --
GO:0004396 hexokinase activity IEA --
GO:0005536 glucose binding IEA --
GO:0008865 fructokinase activity IBA --
genes like me logo Genes that share ontologies with HKDC1: view
genes like me logo Genes that share phenotypes with HKDC1: view

Animal Model Products

  • Taconic Biosciences Mouse Models for HKDC1

miRNA for HKDC1 Gene

miRTarBase miRNAs that target HKDC1

No data available for Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for HKDC1 Gene

Localization for HKDC1 Gene

Subcellular locations from

Jensen Localization Image for HKDC1 Gene COMPARTMENTS Subcellular localization image for HKDC1 gene
Compartment Confidence
cytosol 4
extracellular 1
mitochondrion 1
nucleus 1
peroxisome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for HKDC1 Gene

Pathways & Interactions for HKDC1 Gene

genes like me logo Genes that share pathways with HKDC1: view

UniProtKB/Swiss-Prot Q2TB90-HKDC1_HUMAN

  • Pathway: Carbohydrate metabolism; hexose metabolism.

Interacting Proteins for HKDC1 Gene

Gene Ontology (GO) - Biological Process for HKDC1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005975 carbohydrate metabolic process IEA --
GO:0006096 glycolytic process IEA,IBA --
GO:0051156 glucose 6-phosphate metabolic process IBA --
genes like me logo Genes that share ontologies with HKDC1: view

No data available for SIGNOR curated interactions for HKDC1 Gene

Drugs & Compounds for HKDC1 Gene

(5) Drugs for HKDC1 Gene - From: HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Adenosine triphosphate Approved Nutra 0
Glucosamine Approved Nutra 158
Beta-D-Glucose Experimental Pharma 0
glucosamine 6-phosphate Experimental Pharma 0
Glucose 6-phosphate Experimental Pharma 0

(9) Additional Compounds for HKDC1 Gene - From: HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
  • Adenosindiphosphorsaeure
  • Adenosine 5'-pyrophosphate
  • Adenosine diphosphate
  • Adenosine pyrophosphate
  • Adenosine-5'-diphosphate
Full agonist, Agonist 58-64-0
  • a-D-Glucopyranose
  • a-D-Glucose
  • a-Dextrose
  • a-Glucose
  • alpha-D-Glucopyranose
Beta-D-Fructose 6-phosphate
  • beta-D-Fructose 6-phosphate
Beta-D-Glucose 6-phosphate
  • beta-D-Glucose 6-(dihydrogen phosphate)
  • beta-D-Glucose 6-phosphate
  • beta-D-Arabino-hexulose
  • beta-D-Fructofuranose
  • beta-D-Fructose
  • beta-delta-Arabino-hexulose
  • beta-delta-Fructofuranose
genes like me logo Genes that share compounds with HKDC1: view

Transcripts for HKDC1 Gene

Unigene Clusters for HKDC1 Gene

Hexokinase domain containing 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HKDC1 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8a · 8b ^ 9a · 9b ^ 10a · 10b ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20
SP1: - - -
SP2: -

Relevant External Links for HKDC1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HKDC1 Gene

mRNA expression in normal human tissues for HKDC1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for HKDC1 Gene

This gene is overexpressed in Small Intestine - Terminal Ileum (x15.6), Kidney - Cortex (x9.4), and Colon - Transverse (x4.2).

Protein differential expression in normal tissues from HIPED for HKDC1 Gene

This gene is overexpressed in Nasal epithelium (25.5), Brain (16.4), and Retina (11.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for HKDC1 Gene

SOURCE GeneReport for Unigene cluster for HKDC1 Gene Hs.522988

genes like me logo Genes that share expression patterns with HKDC1: view

Primer Products

No data available for mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for HKDC1 Gene

Orthologs for HKDC1 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for HKDC1 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia HKDC1 35
  • 88.95 (n)
  • 93.02 (a)
HKDC1 36
  • 93 (a)
(Canis familiaris)
Mammalia HKDC1 35
  • 89.35 (n)
  • 93.57 (a)
HKDC1 36
  • 93 (a)
(Mus musculus)
Mammalia Hkdc1 35
  • 86.76 (n)
  • 91.47 (a)
Hkdc1 16
Hkdc1 36
  • 91 (a)
(Pan troglodytes)
Mammalia HKDC1 35
  • 97.48 (n)
  • 97.44 (a)
HKDC1 36
  • 99 (a)
(Monodelphis domestica)
Mammalia HKDC1 36
  • 88 (a)
(Ornithorhynchus anatinus)
Mammalia HKDC1 36
  • 75 (a)
(Gallus gallus)
Aves HKDC1 35
  • 75.37 (n)
  • 84.43 (a)
HKDC1 36
  • 84 (a)
(Anolis carolinensis)
Reptilia HKDC1 36
  • 83 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia hkdc1 35
  • 71.99 (n)
  • 80.66 (a)
(Danio rerio)
Actinopterygii hkdc1 35
  • 69.94 (n)
  • 75.25 (a)
hkdc1 36
  • 75 (a)
fruit fly
(Drosophila melanogaster)
Insecta Hex-A 36
  • 38 (a)
Hex-C 36
  • 40 (a)
Hex-t2 36
  • 37 (a)
(Caenorhabditis elegans)
Secernentea F14B4.2 36
  • 44 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes EMI2 36
  • 30 (a)
GLK1 36
  • 30 (a)
HXK1 36
  • 31 (a)
HXK2 36
  • 30 (a)
HXK2 38
(Oryza sativa)
Liliopsida Os05g0187100 35
  • 50.97 (n)
  • 44.04 (a)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.11095 36
  • 47 (a)
Species with no ortholog for HKDC1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for HKDC1 Gene

Gene Tree for HKDC1 (if available)
Gene Tree for HKDC1 (if available)

Paralogs for HKDC1 Gene

Paralogs for HKDC1 Gene

(5) SIMAP similar genes for HKDC1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with HKDC1: view

Variants for HKDC1 Gene

Sequence variations from dbSNP and Humsavar for HKDC1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
VAR_034776 -
VAR_034777 -
rs7899445 - 69,240,671(+) CATCC(C/T)GGCCC nc-transcript-variant, reference, missense
rs1111335 - 69,258,904(-) GGTCC(A/G)GATGT nc-transcript-variant, reference, missense
rs906219 - 69,266,754(-) TCCTA(G/T)TTCTC reference, missense

Structural Variations from Database of Genomic Variants (DGV) for HKDC1 Gene

Variant ID Type Subtype PubMed ID
nsv508589 CNV Loss 20534489
esv2462035 CNV Deletion 19546169
esv2407805 CNV Deletion 18987734
esv3686 CNV Deletion 18987735
esv2738095 CNV Deletion 23290073
esv6582 CNV Loss 19470904
nsv895695 CNV Gain 21882294

Variation tolerance for HKDC1 Gene

Residual Variation Intolerance Score: 22% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 9.05; 87.56% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for HKDC1 Gene

Human Gene Mutation Database (HGMD)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for HKDC1 Gene

Disorders for HKDC1 Gene

Relevant External Links for HKDC1

Genetic Association Database (GAD)
Human Genome Epidemiology (HuGE) Navigator
Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for HKDC1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HKDC1 Gene

Publications for HKDC1 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 48 67
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  3. Proteomic analysis of the NOS2 interactome in human airway epithelial cells. (PMID: 23438482) Foster M.W. … Marshall H.E. (Nitric Oxide 2013) 3
  4. Identification of HKDC1 and BACE2 as genes influencing glycemic traits during pregnancy through genome-wide association studies. (PMID: 23903356) Hayes M.G. … Lowe W.L. (Diabetes 2013) 3
  5. A negative genetic interaction map in isogenic cancer cell lines reveals cancer cell vulnerabilities. (PMID: 24104479) Vizeacoumar F.J. … Moffat J. (Mol. Syst. Biol. 2013) 3

Products for HKDC1 Gene

Sources for HKDC1 Gene