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Aliases & Descriptions for HIST3H3
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| H3.4 2 | | H3/g 1, 2, 3 | | H3/t 3 | | H3FT 2, 3, 5 | | H3T 5 | | H3t 1, 2, 3 | | MGC126886 2 | | MGC126888 2 | | OTTHUMP00000037945 2 |
| | | Descriptions |
|---|
| H3 histone family, member T 1, 2 | | histone 3, H3 1, 2 | | histone cluster 3, H3 2 |
|
| | Search outside databases for aliases for HIST3H3 genePrevious GC identifers: GC01M224351 GC01M224998 GC01M225587 GC01M224919 |
Summaries for HIST3H3(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for HIST3H3: Histones are basic nuclear proteins that are responsible for the nucleosome structure of the chromosomal fiber in eukaryotes. Nucleosomes consist of approximately 146 bp of DNA wrapped around a histone octamer composed of pairs of each of the four core histones (H2A, H2B, H3, and H4). The chromatin fiber is further compacted through the interaction of a linker histone, H1, with the DNA between the nucleosomes to form higher order chromatin structures. This gene is intronless and encodes a member of the histone H3 family. Transcripts from this gene lack polyA tails; instead, they contain a palindromic termination element. This gene is located separately from the other H3 genes that are in the histone gene cluster on chromosome 6p22-p21.3. [provided by RefSeq] UniProtKB/Swiss-Prot: H31T_HUMAN, Q16695Function: Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodelingGene Wiki entry for HIST3H3 |
Genomic Location for HIST3H3
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the HIST3H3 gene 
Entrez Gene cytogenetic band: 1q42 Ensembl cytogenetic band: 1q42.13 HGNC cytogenetic band: 1q42.13HIST3H3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure GeneLoc location for GC01M226679:
(about GC identifiers)
Start:
|
226,679,169 bp from pter |
End:
|
226,679,649 bp from pter |
Size:
|
481 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000001.9 NT_004559.13
| Proteins for HIST3H3
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: H31T_HUMAN, Q16695 (See
protein sequence)Recommended Name: Histone H3.1t Size: 136 amino acids; 15508 Da
Subunit: The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA
Subcellular location: Nucleus
Developmental stage: Expressed during S phase, then expression strongly decreases as cell division slows down during the process of differentiation
PDB structures from and Proteopedia :2V1D (3D)
 
Secondary accessions: Q6FGU4Post-translational modifications:
Acetylation is generally linked to gene activation. Acetylation on Lys-10 (H3K9ac) impairs methylation at Arg-9 (H3R8sme2). Acetylation on Lys-19 (H3K18ac) and Lys-24 (H3K24ac) favors methylation at Arg-18 (H3R17me) (By similarity)1
Citrullination at Arg-9 (H3R8ci) and/or Arg-18 (H3R17ci) by PADI4 impairs methylation and represses transcription (By similarity)1
Asymmetric dimethylation at Arg-18 (H3R17me2a) by CARM1 is linked to gene activation. Symmetric dimethylation at Arg-9 (H3R8sme2) by PRMT5 is linked to gene repression. Asymmetric dimethylation at Arg-3 (H3R2me2a) by PRMT6 is linked to gene repression and is mutually exclusive with H3 Lys-5 methylation (H3K4me2 and H3K4me3). H3R2me2a is present at the 3' of genes regardless of their transcription state and is enriched on inactive promoters, while it is absent on active promoters (By similarity)1
Methylation at Lys-5 (H3K4me), Lys-37 (H3K36me) and Lys-80 (H3K79me) are linked to gene activation. Methylation at Lys-5 (H3K4me) facilitates subsequent acetylation of H3 and H4. Methylation at Lys-80 (H3K79me) is associated with DNA double-strand break (DSB) responses and is a specific target for TP53BP1. Methylation at Lys-10 (H3K9me) and Lys-28 (H3K27me) are linked to gene repression. Methylation at Lys-10 (H3K9me) is a specific target for HP1 proteins (CBX1, CBX3 and CBX5) and prevents subsequent phosphorylation at Ser-11 (H3S10ph) and acetylation of H3 and H4. Methylation at Lys-5 (H3K4me) and Lys-80 (H3K79me) require preliminary monoubiquitination of H2B at 'Lys-120'. Methylation at Lys-10 (H3K9me) and Lys-28 (H3K27me) are enriched in inactive X chromosome chromatin (By similarity)1
Phosphorylated at Thr-4 (H3T3ph) by GSG2/haspin during prophase and dephosphorylated during anaphase. At centromeres, specifically phosphorylated at Thr-12 (H3T11ph) from prophase to early anaphase. Phosphorylated at Ser-11 during the whole mitosis. Phosphorylation at Ser-11 (H3S10ph), which is linked to gene activation, prevents methylation at Lys-10 (H3K9me) but facilitates acetylation of H3 and H4. Phosphorylated at Ser-29 (H3S28ph) by MLTK isoform 1, RPS6KA5 or AURKB during mitosis or upon ultraviolet B irradiation (By similarity)1
Phosphorylation at Ser-11 (H3S10ph) is crucial for chromosome condensation and cell-cycle progression during mitosis and meiosis. In addition phosphorylation at Ser-11 (H3S10ph) is important during interphase because it enables the transcription of genes following external stimulation, like stress or growth factors. Phosphorylation at Ser-11 (H3S10ph) is also an essential regulatory mechanism for neoplastic cell transformation. Phosphorylation at Ser-11 (H3S10ph) by AURKB/Aurora-B mediates the dissociation of HP1 proteins (CBX1, CBX3 and CBX5) from heterochromatin1
Ubiquitinated (By similarity)1
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_003484.1
ENSEMBL proteins: ENSP00000355657
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: HIST3H3 
3 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for HIST3H3: Assays for HIST3H3: | Protein
Domains/ Families for HIST3H3(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q16695
ProtoNet protein and cluster: Q16695 1 Blocks protein family: IPB000164 Histone H3
UniProtKB/Swiss-Prot: H31T_HUMAN, Q16695Similarity: Belongs to the histone H3 family | Gene Function for HIST3H3
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003493
Applied Biosystems Silencer® siRNAs for HIST3H3
Sigma-Aldrich siRNA for HIST3H3  Sigma-Aldrich shRNA for HIST3H3  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_003493                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003493                                  untagged cDNA clone in CMV expression vector: NM_003493 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_003493
UniProtKB/Swiss-Prot: H31T_HUMAN, Q16695Function: Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling2 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for HIST3H3
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
3 Sigma-Aldrich "Your Favorite Gene" Pathways for HIST3H3 (Your Favorite Gene powered by Ingenuity) 
5/20 Interacting proteins for HIST3H3 (Q166951, 2) via UniProtKB, MINT, and/or STRING (see all 20
)About this table
1 Gene Ontology (GO) biological process term (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0006334 | nucleosome assembly |
NAS | -- | About this table
|
Drugs & Compounds for HIST3H3(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for HIST3H3
|
Transcripts for HIST3H3(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003493
Sigma-Aldrich siRNA for HIST3H3  Sigma-Aldrich shRNA for HIST3H3  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_003493 REFSEQ mRNAs for HIST3H3 gene: NM_003493.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_003493               OriGene GFP tagged cDNA clone in CMV expression vector: NM_003493                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003493                                  untagged cDNA clone in CMV expression vector: NM_003493  Additional cDNA sequence: AK312217.1 BC069079.1 BC101837.1 BC101839.1 CR542013.1 1 DOTS entry: DT.91953314 3 AceView cDNA sequences:NM_003493 BC069079 CR542013
highest scoring ESTs for HIST3H3:BC069079 BG900472 CR542013 NM_003493 BC101837 BC101839 DB026731 DB453485 Unigene Cluster for HIST3H3: Histone cluster 3, H3 Hs.248171 [show with all ESTs]Unigene Representative Sequence: DB026731
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000366696
|
Expression for HIST3H3
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| HIST3H3 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for HIST3H3
1 / 2 / 3 2 probe-sets matching HIST3H3 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: CCTAAGGACA
SOURCE GeneReport for Unigene cluster: Hs.248171 UniProtKB/Swiss-Prot: H31T_HUMAN, Q16695Tissue specificity: Expressed in testicular cells |
Orthologs for HIST3H3
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for HIST3H3 gene from 5/9 species (see all 9
)
About this table Species with no ortholog for HIST3H3
ENSEMBL Gene Tree for HIST3H3 | Paralogs for HIST3H3(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for HIST3H3 gene
- HIST1H3J2 HIST1H3A2
Pseudogenes
- 6 related pseudogenes
|
SNPs/Variants for HIST3H3(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for HIST3H3 (up to first 250kb)
|
Disorders & Mutations for HIST3H3
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 602820
|
Medical News for HIST3H3(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for HIST3H3 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/74 PubMed articles for HIST3H3 gene (see all 74
):- The human and mouse replication-dependent histone genes. (PubMed id 12408966)2, 3, 4 Marzluff W.F....Maltais L.J. (2002)
- A solitary human H3 histone gene on chromosome 1. (PubMed id 8834248)2, 3, 4 Albig W....Doenecke D. (1996)
- The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)3, 4 Gregory S.G.... Bentley D.R. (2006)
- Identifying and quantifying in vivo methylation sites by heavy methyl SILAC. (PubMed id 15782174)3, 4 Ong S.E.... Mann M. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Changes on histone H3 modifications on the GLUT5 gene and its expression in Caco-2 cells co-treated with a p44/42 MAPK inhibitor and glucocorticoid hormone. (PubMed id 18439419)3 Mochizuki K....Goda T. (2008)
- Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle. (PubMed id 18691976)4 Daub H.... Mann M. (2008)
- Nucleosome formation with the testis-specific histone H3 variant, H3t, by human nucleosome assembly proteins in vitro. (PubMed id 18281699)3 Tachiwana H....Kurumizaka H. (2008)
- Cooperative activity of cdk8 and GCN5L within Mediator directs tandem phosphoacetylation of histone H3. (PubMed id 18418385)3 Meyer K.D....Taatjes D.J. (2008)
- Polybromo-1-bromodomains bind histone H3 at specific acetyl-lysine positions. (PubMed id 17320048)3 Chandrasekaran R. and Thompson M. (2007)
|
Search for HIST3H3
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing HIST3H3
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing HIST3H3
(According to HUGE)
About This Section
| -- |
Specialized Databases showing HIST3H3(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for HIST3H3(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for HIST3H3:

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Incremental update: 13 Oct 2009
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