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HIST3H2BA Gene(Pseudogene)

Histone Cluster 3 H2B Family Member A (Pseudogene)

GCID:
GC01M228464
GIFtS:
15
Genes Participants
UDN Logo

Aliases for HIST3H2BA Gene

Aliases for HIST3H2BA Gene

  • Histone Cluster 3 H2B Family Member A (Pseudogene) 2 3 5
  • Histone Cluster 3, H2ba (Pseudogene) 2
  • Histone Cluster 3, H2ba 2
  • Histone 3, H2ba 2

External Ids for HIST3H2BA Gene

Previous GeneCards Identifiers for HIST3H2BA Gene

  • GC01U900035
  • GC01M225626
  • GC01M224958
  • GC01M226718
  • GC01M228651
  • GC01M199167

Summaries for HIST3H2BA Gene

Entrez Gene Summary for HIST3H2BA Gene

  • Histones are basic nuclear proteins responsible for nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This gene is a histone pseudogene found on chromosome 1. [provided by RefSeq, Oct 2015]

GeneCards Summary for HIST3H2BA Gene

HIST3H2BA (Histone Cluster 3 H2B Family Member A (Pseudogene)) is a Pseudogene.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HIST3H2BA Gene

Genomics for HIST3H2BA Gene

Products:

  1. Regulatory Element

Regulatory Elements for HIST3H2BA Gene

Enhancers for HIST3H2BA Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G228463 1.6 FANTOM5 ENCODE dbSUPER 0.7 -0.1 -62 2.4 HDGF ATF1 CREB3L1 ARNT SIN3A TCF12 CBX5 GATA2 KLF13 JUNB ENSG00000231563 TRIM11 OBSCN HIST3H2BB HIST3H2A HIST3H2BA RNF187
GH01G228478 1.2 Ensembl ENCODE dbSUPER 0.4 -14.9 -14911 1.4 CTCF ESRRA FOXA2 ZSCAN4 DIDO1 GATA2 POLR2A PRDM10 CREM FOXA3 RNF187 HIST3H2BA
GH01G228484 1.4 Ensembl ENCODE dbSUPER 0.3 -20.7 -20709 1.0 HDGF FOXA2 ARNT KLF17 ZNF2 RARA TCF12 ZNF121 EGR1 FOS OBSCN RNF187 HIST3H2BA
GH01G228472 0.9 Ensembl ENCODE 0.4 -8.2 -8175 0.4 JUN NR2F1 MAX ATF2 ZNF592 ZNF589 ID3 NR2C1 NR2F6 KDM1A OBSCN GJC2 HIST3H2BA RNF187
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HIST3H2BA on UCSC Golden Path with GeneCards custom track

Promoters for HIST3H2BA Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000021311 -174 401 MXI1 NRF1 SIN3A E2F4 EP300 SP1 POLR2A NFYB TCF7 ZBTB33

Genomic Location for HIST3H2BA Gene

Chromosome:
1
Start:
228,464,103 bp from pter
End:
228,464,626 bp from pter
Size:
524 bases
Orientation:
Minus strand

Genomic View for HIST3H2BA Gene

Genes around HIST3H2BA on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HIST3H2BA Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HIST3H2BA Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for HIST3H2BA Gene

Proteins for HIST3H2BA Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for HIST3H2BA Gene

No Post-translational modifications

No data available for DME Specific Peptides for HIST3H2BA Gene

Domains & Families for HIST3H2BA Gene

Gene Families for HIST3H2BA Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HIST3H2BA: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HIST3H2BA Gene

Function for HIST3H2BA Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HIST3H2BA Gene

Localization for HIST3H2BA Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HIST3H2BA Gene

Pathways & Interactions for HIST3H2BA Gene

SuperPathways for HIST3H2BA Gene

PathCards logo More details on SuperPathways for HIST3H2BA
No Data Available

Interacting Proteins for HIST3H2BA Gene

Gene Ontology (GO) - Biological Process for HIST3H2BA Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HIST3H2BA Gene

Drugs & Compounds for HIST3H2BA Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for HIST3H2BA Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for HIST3H2BA Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HIST3H2BA Gene

No ASD Table

Relevant External Links for HIST3H2BA Gene

GeneLoc Exon Structure for
HIST3H2BA
ECgene alternative splicing isoforms for
HIST3H2BA

Expression for HIST3H2BA Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HIST3H2BA Gene

mRNA expression in normal human tissues for HIST3H2BA Gene
mRNA expression by GTEx for HIST3H2BA Gene

mRNA differential expression in normal tissues according to GTEx for HIST3H2BA Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x10.2), Brain - Cerebellum (x7.0), and Brain - Spinal cord (cervical c-1) (x6.3).

NURSA nuclear receptor signaling pathways regulating expression of HIST3H2BA Gene:

HIST3H2BA
genes like me logo Genes that share expression patterns with HIST3H2BA: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HIST3H2BA Gene

Orthologs for HIST3H2BA Gene

Evolution for HIST3H2BA Gene

ENSEMBL:
Gene Tree for HIST3H2BA (if available)
TreeFam:
Gene Tree for HIST3H2BA (if available)

No data available for Orthologs for HIST3H2BA Gene

Paralogs for HIST3H2BA Gene

No data available for Paralogs for HIST3H2BA Gene

Variants for HIST3H2BA Gene

Relevant External Links for HIST3H2BA Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HIST3H2BA

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HIST3H2BA Gene

Disorders for HIST3H2BA Gene

No disorders were found for HIST3H2BA Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HIST3H2BA Gene

Publications for HIST3H2BA Gene

  1. The human and mouse replication-dependent histone genes. (PMID: 12408966) Marzluff W.F. … Maltais L.J. (Genomics 2002) 2 3 64
  2. Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates. (PMID: 20210993) Zhang Z.D. … Gerstein M. (Genome Biol. 2010) 3 64

Products for HIST3H2BA Gene

Sources for HIST3H2BA Gene

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