HIST2H2BF Gene
protein-coding GIFtS: 48
GCID: GC01M149764
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histone cluster 2, H2bf(Previous names: histone 2, H2bf )
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Aliases
for HIST2H2BF gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Histone Cluster 2, H2bf1 2 | | Histone 2, H2bf1 | | Histone H2B Type 2-F2 |
Export aliases for HIST2H2BF gene to outside databasesPrevious GC identifers: GC01M146591 GC01M148048 GC01M149765 GC01M149758 GC01M149760 GC01M149761 GC01M149762 GC01M149763 |
Summaries
for HIST2H2BF gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for HIST2H2BF:
Histones are basic nuclear proteins that are responsible for the nucleosome structure of the chromosomal fiber ineukaryotes. This structure consists of approximately 146 bp of DNA wrapped around a nucleosome, an octamer composed ofpairs of each of the four core histones (H2A, H2B, H3, and H4). The chromatin fiber is further compacted through theinteraction of a linker histone, H1, with the DNA between the nucleosomes to form higher order chromatin structures.This gene encodes a member of the histone H2B family and is found in a histone cluster on chromosome 1. (provided byRefSeq, Jan 2013)
UniProtKB/Swiss-Prot: H2B2F_HUMAN, Q5QNW6Function: Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility tothe cellular machineries which require DNA as a template. Histones thereby play a central role in transcriptionregulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set ofpost-translational modifications of histones, also called histone code, and nucleosome remodeling
Gene Wiki entry for HIST2H2BF
|
Genomic Views
for HIST2H2BF gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000001.10 NC_018912.1 NT_004487.19
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the HIST2H2BF gene promoter:
AML1a Olf-1 CUTL1 Tal-1beta CBF-C POU2F1 POU2F1a POU2F1b POU2F1c ITF-2
Other transcription factors
Search SABiosciences Chromatin IP Primers for HIST2H2BF
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat HIST2H2BF |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 1q21.2 Ensembl cytogenetic band: 1q21.2 HGNC cytogenetic band: 1q21.2HIST2H2BF Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 1 GeneLoc Exon Structure GeneLoc location for GC01M149764: view genomic region
(about GC identifiers)
Start:
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149,754,245 bp from pter |
End:
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149,783,928 bp from pter |
Size:
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29,684 bases |
Orientation:
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minus strand |
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Proteins
for HIST2H2BF gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: H2B2F_HUMAN, Q5QNW6 (See
protein sequence)Recommended Name: Histone H2B type 2-F Size: 126 amino acids; 13920 Da
Subunit: The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in oneH3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA
Subcellular location: Nucleus. Chromosome
Secondary accessions: A8K0U9 B4DLA9Alternative splicing: 2 isoforms: Q5QNW6-1 Q5QNW6-2 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for HIST2H2BF: NX_Q5QNW6
Post-translational modifications:
Monoubiquitination at Lys-35 (H2BK34Ub) by the MSL1/MSL2 dimer is required for histone H3 'Lys-4' (H3K4me) and 'Lys-79'(H3K79me) methylation and transcription activation at specific gene loci, such as HOXA9 and MEIS1 loci. Similarly,monoubiquitination at Lys-121 (H2BK120Ub) by the RNF20/40 complex gives a specific tag for epigenetic transcriptionalactivation and is also prerequisite for histone H3 'Lys-4' and 'Lys-79' methylation. It also functions cooperativelywith the FACT dimer to stimulate elongation by RNA polymerase II1
Phosphorylation at Ser-37 (H2BS36ph) by AMPK in response to stress promotes transcription (By similarity).Phosphorylated on Ser-15 (H2BS14ph) by STK4/MST1 during apoptosis; which facilitates apoptotic chromatin condensation.Also phosphorylated on Ser-15 in response to DNA double strand breaks (DSBs), and in correlation with somatichypermutation and immunoglobulin class-switch recombination1
GlcNAcylation at Ser-113 promotes monoubiquitination of Lys-121. It fluctuates in response to extracellular glucose,and associates with transcribed genes (By similarity)1
Crotonylation (Kcr) is specifically present in male germ cells and marks testis-specific genes in post-meiotic cells,including X-linked genes that escape sex chromosome inactivation in haploid cells. Crotonylation marks activepromoters and enhancers and confers resistance to transcriptional repressors. It is also associated withpost-meiotically activated genes on autosomes1
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q5QNW6
HIST2H2BF Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins (2 alternative transcripts):
NP_001019770.1 NP_001154806.1
ENSEMBL proteins: ENSP00000358164 ENSP00000445831 ENSP00000407461
Human Recombinant Protein Products:
Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view): About this table
HIST2H2BF for ontologies About GeneDecksing
HIST2H2BF Antibody Products:
Assay Products for HIST2H2BF: |
Protein
Domains /
Families
for HIST2H2BF gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
HIST2H2BF for domains About GeneDecksing
3 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry Q5QNW6ProtoNet protein and cluster: Q5QNW6 UniProtKB/Swiss-Prot: H2B2F_HUMAN, Q5QNW6Similarity: Belongs to the histone H2B family |
Function
for HIST2H2BF gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Function Summary:
UniProtKB/Swiss-Prot: H2B2F_HUMAN, Q5QNW6Function: Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility tothe cellular machineries which require DNA as a template. Histones thereby play a central role in transcriptionregulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set ofpost-translational modifications of histones, also called histone code, and nucleosome remodeling
Clone
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OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for HIST2H2BF (see all 2)
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In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for HIST2H2BF |
Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0003677 | DNA binding |
IEA | -- | | GO:0046982 | protein heterodimerization activity |
IEA | -- |
HIST2H2BF for ontologies About GeneDecksing
|
Pathways & Interactions
for HIST2H2BF gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Unified GeneCards pathways About this table
See pathways by source
| Super-pathway | contained gene-specific pathways |
|---|
| 1 | Systemic lupus erythematosus | |
Pathway sources
See GeneCards unified pathways
Show all pathways
1 
Kegg Pathway (Kegg details for HIST2H2BF):
HIST2H2BF for pathways About GeneDecksing
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for HIST2H2BF
STRING Interaction
Network Preview (showing 3 interactants - click image to see more details)
5/198 Interacting proteins for HIST2H2BF (Q5QNW62, 3 ENSP000003581644) via UniProtKB, MINT, STRING, and/or I2D (see all 198)About this table
Gene Ontology (GO): 1 biological process term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0006334 | nucleosome assembly |
IEA | -- |
HIST2H2BF for ontologies About GeneDecksing
|
Drugs & Compounds
for HIST2H2BF gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for HIST2H2BF
Search CenterWatch for drugs/clinical trials and news about HIST2H2BF / H2B2F
|
Transcripts
for HIST2H2BF gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for HIST2H2BF gene (2 alternative transcripts): NM_001024599.4 NM_001161334.1 Unigene Cluster for HIST2H2BF: Histone cluster 2, H2bf Hs.632451 [show with all ESTs]Unigene Representative Sequence: AK0924184 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000469483 ENST00000369167(uc001esr.3) ENST00000545683(uc010pbj.2)
ENST00000427880(uc010pbk.2)
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for HIST2H2BF (see all 2)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for HIST2H2BF (see all 2)
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector (see all 2): HIST2H2BF (NM_001024599) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for HIST2H2BF | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat HIST2H2BF |
Additional cDNA sequence: AK092418.1 AK289664.1 AK296916.1 AK299108.1 BC110793.1 9 DOTS entries: DT.92010992 DT.40219799 DT.114591 DT.100750836 DT.100855754 DT.121372893 DT.91802516 DT.95072607 DT.95258191 7 AceView cDNA sequences: BI835621 BX282515 BE742212 BI836145 CD698245 AI147174 AI660196
GeneLoc Exon Structure
|
Expression
for HIST2H2BF gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| HIST2H2BF expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: --
About this image
See HIST2H2BF Protein Expression from SPIRE MOPED and PaxDB
SOURCE GeneReport for Unigene cluster: Hs.632451
SABiosciences Custom PCR Arrays for HIST2H2BF
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for HIST2H2BF
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat HIST2H2BF | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat HIST2H2BF | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat HIST2H2BF | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for HIST2H2BF |
Orthologs
for HIST2H2BF gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of animals.
Orthologs for HIST2H2BF gene from 4/13 species (see all 13) About this table
ENSEMBL Gene Tree for HIST2H2BF (if available)
TreeFam Gene Tree for HIST2H2BF (if available) |
Paralogs
for HIST2H2BF gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for HIST2H2BF gene
- HIST3H2BB2 HIST1H2BI2 HIST1H2BK2 HIST1H2BD2 HIST1H2BG2 HIST1H2BC2 HIST1H2BH2 HIST1H2BL2
- HIST1H2BE2 HIST1H2BO2 HIST1H2BJ2 HIST1H2BB2 HIST1H2BF2 HIST2H2BE2
18/22 SIMAP similar genes for HIST2H2BF using alignment to 2 protein entries: H2B2F_HUMAN (see all proteins)
(see all similar genes):HIST1H2BB HIST1H2BD HIST1H2BE HIST1H2BF HIST1H2BG HIST1H2BH
HIST1H2BI HIST1H2BJ HIST1H2BK HIST1H2BM HIST1H2BN HIST1H2BO
HIST2H2BE HIST3H2BB HIST1H2BC H2BFS HIST1H2BL HIST1H2BA
HIST2H2BF for paralogs About GeneDecksing
2 Pseudogenes.org Pseudogenes for HIST2H2BF
PGOHUM00000251085 PGOHUM00000260110
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Genomic Variants
for HIST2H2BF gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 1 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for HIST2H2BF (149754245 - 149783928 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 19 variations for HIST2H2BF
15/18 CNVs (see all 18): 8924 6785 48120 2326 48129 22942 64903 4255 8329 64896 64904 3313 30433 48130 48128
1 Inversion: 37080 | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing HIST2H2BF |
|
Disorders
/ Diseases
for HIST2H2BF gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
HIST2H2BF for disorders About GeneDecksing
2  diseases for HIST2H2BF: About MalaCardssystemic lupus erythematosus lupus erythematosus
Export disorders for HIST2H2BF gene to outside databases
|
Publications
for HIST2H2BF gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for HIST2H2BF gene, integrated from 9 sources (see all 17):
(articles sorted by number of sources associating them with HIST2H2BF) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Characterization of histones H2A and H2B variants and their post- translational modifications by mass spectrometry. (PubMed id 16319397)1, 2 Bonenfant D.... van Oostrum J. (2006)
- Histone H2B monoubiquitination functions cooperatively with FACT to regulate elongation by RNA polymerase II. (PubMed id 16713563)1, 2 Pavri R....Reinberg D. (2006)
- The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)1, 2 Gregory S.G.... Bentley D.R. (2006)
- Inhibition of core histones acetylation by carcinogenic nickel(II). (PubMed id 16283522)1, 2 Golebiowski F. and Kasprzak K.S. (2005)
- Monoubiquitination of human histone H2B: the factors involved and their roles in HOX gene regulation. (PubMed id 16307923)1, 2 Zhu B.... Reinberg D. (2005)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
- Apoptotic phosphorylation of histone H2B is mediated by mammalian sterile twenty kinase. (PubMed id 12757711)1, 2 Cheung W.L.... Allis C.D. (2003)
- Host cell interactome of HIV-1 Rev includes RNA helica ses involved in multiple facets of virus production. (PubMed id 22174317)1 Naji S....Gerace L. (2012)
- Methods for quantification of in vivo changes in prote in ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)1 Udeshi N.D....Carr S.A. (2012)
|
External Searches for HIST2H2BF gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing HIST2H2BF gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing HIST2H2BF gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing HIST2H2BF gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for HIST2H2BF | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for HIST2H2BF gene:
Search GeneIP for patents involving HIST2H2BF
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for HIST2H2BF gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
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| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for HIST2H2BF |
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