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Aliases for HIST1H4E Gene

Aliases for HIST1H4E Gene

  • Histone Cluster 1, H4e 2 3
  • H4FJ 3 4 6
  • H4 Histone Family, Member J 2 3
  • Histone 1, H4e 2 3
  • H4/J 3 4
  • HIST1H4A HIST1H4B HIST1H4C HIST1H4D HIST1H4E HIST1H4F HIST1H4H HIST1H4I HIST1H4J HIST1H4K HIST1H4L HIST2H4A HIST2H4B HIST4H4 4
  • Histone H4 3
  • HIST2H4 4
  • H4/G 4
  • H4FG 4
  • H4/A 4
  • H4/B 4
  • H4/C 4
  • H4/D 4
  • H4/E 4
  • H4/H 4
  • H4/I 4
  • H4/K 4
  • H4/M 4
  • H4/N 4
  • H4/O 4
  • H4F2 4
  • H4FA 4
  • H4FB 4
  • H4FC 4
  • H4FD 4
  • H4FE 4
  • H4FH 4
  • H4FI 4
  • H4FK 4
  • H4FM 4
  • H4FN 4
  • H4FO 4

External Ids for HIST1H4E Gene

Previous HGNC Symbols for HIST1H4E Gene

  • H4FJ

Previous GeneCards Identifiers for HIST1H4E Gene

  • GC06P026263
  • GC06P026312
  • GC06P026148

Summaries for HIST1H4E Gene

Entrez Gene Summary for HIST1H4E Gene

  • Histones are basic nuclear proteins that are responsible for the nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This gene is intronless and encodes a member of the histone H4 family. Transcripts from this gene lack polyA tails but instead contain a palindromic termination element. This gene is found in the large histone gene cluster on chromosome 6. [provided by RefSeq, Jul 2008]

GeneCards Summary for HIST1H4E Gene

HIST1H4E (Histone Cluster 1, H4e) is a Protein Coding gene. Among its related pathways are Disease and Apoptotic Pathways in Synovial Fibroblasts.

UniProtKB/Swiss-Prot for HIST1H4E Gene

  • Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling

Gene Wiki entry for HIST1H4E Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HIST1H4E Gene

Genomics for HIST1H4E Gene

Regulatory Elements for HIST1H4E Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for HIST1H4E Gene

Start:
26,204,645 bp from pter
End:
26,205,021 bp from pter
Size:
377 bases
Orientation:
Plus strand

Genomic View for HIST1H4E Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HIST1H4E Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HIST1H4E Gene

Proteins for HIST1H4E Gene

  • Protein details for HIST1H4E Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P62805-H4_HUMAN
    Recommended name:
    Histone H4
    Protein Accession:
    P62805
    Secondary Accessions:
    • A2VCL0
    • P02304
    • P02305
    • Q6DRA9
    • Q6FGB8
    • Q6NWP7

    Protein attributes for HIST1H4E Gene

    Size:
    103 amino acids
    Molecular mass:
    11367 Da
    Quaternary structure:
    • The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA
    SequenceCaution:
    • Sequence=AAI28106.1; Type=Frameshift; Positions=3; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for HIST1H4E Gene

neXtProt entry for HIST1H4E Gene

Proteomics data for HIST1H4E Gene at MOPED

Post-translational modifications for HIST1H4E Gene

  • Acetylation at Lys-6 (H4K5ac), Lys-9 (H4K8ac), Lys-13 (H4K12ac) and Lys-17 (H4K16ac) occurs in coding regions of the genome but not in heterochromatin.
  • Citrullination at Arg-4 (H4R3ci) by PADI4 impairs methylation.
  • Crotonylation (Kcr) is specifically present in male germ cells and marks testis-specific genes in post-meiotic cells, including X-linked genes that escape sex chromosome inactivation in haploid cells. Crotonylation marks active promoters and enhancers and confers resistance to transcriptional repressors. It is also associated with post-meiotically activated genes on autosomes.
  • Monomethylated, dimethylated or trimethylated at Lys-21 (H4K20me1, H4K20me2, H4K20me3). Monomethylation is performed by SET8. Trimethylation is performed by SUV420H1 and SUV420H2 and induces gene silencing
  • Monomethylation and asymmetric dimethylation at Arg-4 (H4R3me1 and H4R3me2a, respectively) by PRMT1 favors acetylation at Lys-9 (H4K8ac) and Lys-13 (H4K12ac). Demethylation is performed by JMJD6. Symmetric dimethylation on Arg-4 (H4R3me2s) by the PRDM1/PRMT5 complex may play a crucial role in the germ-cell lineage.
  • Phosphorylated by PAK2 at Ser-48 (H4S47ph). This phosphorylation increases the association of H3.3-H4 with the histone chaperone HIRA, thus promoting nucleosome assembly of H3.3-H4 and inhibiting nucleosome assembly of H3.1-H4.
  • Sumoylated, which is associated with transcriptional repression.
  • Ubiquitinated by the CUL4-DDB-RBX1 complex in response to ultraviolet irradiation. This may weaken the interaction between histones and DNA and facilitate DNA accessibility to repair proteins. Monoubiquitinated at Lys-92 of histone H4 (H4K91ub1) in response to DNA damage. The exact role of H4K91ub1 in DNA damage response is still unclear but it may function as a licensing signal for additional histone H4 post-translational modifications such as H4 Lys-21 methylation (H4K20me).
  • Ubiquitination at Lys32, Lys60, Lys78, and Lys80
  • Modification sites at PhosphoSitePlus

Other Protein References for HIST1H4E Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

No data available for DME Specific Peptides for HIST1H4E Gene

Domains for HIST1H4E Gene

Gene Families for HIST1H4E Gene

HGNC:
  • HIST :Histones / Replication-dependent

Protein Domains for HIST1H4E Gene

Graphical View of Domain Structure for InterPro Entry

P62805

UniProtKB/Swiss-Prot:

H4_HUMAN :
  • P62805
Family:
  • Belongs to the histone H4 family.
genes like me logo Genes that share domains with HIST1H4E: view

No data available for Suggested Antigen Peptide Sequences for HIST1H4E Gene

Function for HIST1H4E Gene

Molecular function for HIST1H4E Gene

UniProtKB/Swiss-Prot Function:
Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling

Gene Ontology (GO) - Molecular Function for HIST1H4E Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding TAS 3035717
GO:0005515 protein binding IPI 10220385
GO:0035575 histone demethylase activity (H4-K20 specific) TAS --
GO:0042393 histone binding IPI 20498094
GO:0044822 poly(A) RNA binding IDA 22658674
genes like me logo Genes that share ontologies with HIST1H4E: view

miRNA for HIST1H4E Gene

miRTarBase miRNAs that target HIST1H4E

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for HIST1H4E

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for HIST1H4E Gene

Localization for HIST1H4E Gene

Subcellular locations from UniProtKB/Swiss-Prot for HIST1H4E Gene

Nucleus. Chromosome.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for HIST1H4E Gene COMPARTMENTS Subcellular localization image for HIST1H4E gene
Compartment Confidence
nucleus 5
cytoskeleton 4
extracellular 4

Gene Ontology (GO) - Cellular Components for HIST1H4E Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000228 nuclear chromosome IDA 14718166
GO:0000786 nucleosome TAS 3035717
GO:0005576 extracellular region TAS --
GO:0005634 nucleus IDA 14585971
GO:0005654 nucleoplasm TAS --
genes like me logo Genes that share ontologies with HIST1H4E: view

Pathways for HIST1H4E Gene

genes like me logo Genes that share pathways with HIST1H4E: view

Gene Ontology (GO) - Biological Process for HIST1H4E Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000183 chromatin silencing at rDNA TAS --
GO:0000278 mitotic cell cycle TAS --
GO:0000723 telomere maintenance TAS --
GO:0006325 chromatin organization TAS --
GO:0006334 nucleosome assembly TAS --
genes like me logo Genes that share ontologies with HIST1H4E: view

Transcripts for HIST1H4E Gene

mRNA/cDNA for HIST1H4E Gene

(22) Selected AceView cDNA sequences:
(3) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HIST1H4E Gene

Histone cluster 1, H4e:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for HIST1H4E

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HIST1H4E Gene

No ASD Table

Relevant External Links for HIST1H4E Gene

GeneLoc Exon Structure for
HIST1H4E
ECgene alternative splicing isoforms for
HIST1H4E

Expression for HIST1H4E Gene

mRNA expression in normal human tissues for HIST1H4E Gene

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for HIST1H4E Gene

SOURCE GeneReport for Unigene cluster for HIST1H4E Gene Hs.662174

genes like me logo Genes that share expressions with HIST1H4E: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for HIST1H4E Gene

Orthologs for HIST1H4E Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for HIST1H4E Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia LOC517138 35
  • 83.82 (n)
  • 100 (a)
chimpanzee
(Pan troglodytes)
Mammalia LOC472228 35
  • 80.91 (n)
  • 100 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC101733182 35
  • 80.91 (n)
  • 100 (a)
zebrafish
(Danio rerio)
Actinopterygii LOC564610 35
  • 83.17 (n)
  • 100 (a)
wufe37d09 35
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP012885 35
  • 82.2 (n)
  • 99.03 (a)
fruit fly
(Drosophila melanogaster)
Insecta His4:CG33907 35
  • 80.26 (n)
  • 99.03 (a)
worm
(Caenorhabditis elegans)
Secernentea his-56 35
  • 75.08 (n)
  • 99.03 (a)
thale cress
(Arabidopsis thaliana)
eudicotyledons AT1G07660 35
  • 76.38 (n)
  • 98.06 (a)
rice
(Oryza sativa)
Liliopsida Os03g0119900 35
  • 78.96 (n)
  • 98.06 (a)
Species with no ortholog for HIST1H4E:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for HIST1H4E Gene

ENSEMBL:
Gene Tree for HIST1H4E (if available)
TreeFam:
Gene Tree for HIST1H4E (if available)

Paralogs for HIST1H4E Gene

Selected SIMAP similar genes for HIST1H4E Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with HIST1H4E: view

No data available for Paralogs for HIST1H4E Gene

Variants for HIST1H4E Gene

Sequence variations from dbSNP and Humsavar for HIST1H4E Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs806795 -- 26,205,065(+) TGGTT(A/G)GTCTC downstream-variant-500B
rs2069018 -- 26,205,490(-) CAGGA(A/G)CTTCT downstream-variant-500B
rs2069019 -- 26,205,376(-) GGTCC(A/G)GCCCA downstream-variant-500B
rs2069020 -- 26,205,272(-) TTTTA(A/G)GTACT downstream-variant-500B
rs6925088 -- 26,203,957(+) ATTCT(C/T)AGTAG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for HIST1H4E Gene

Variant ID Type Subtype PubMed ID
nsv428137 CNV Loss 18775914
dgv375n21 CNV Loss 19592680
nsv883490 CNV Loss 21882294

Relevant External Links for HIST1H4E Gene

HapMap Linkage Disequilibrium report
HIST1H4E

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for HIST1H4E Gene

Disorders for HIST1H4E Gene

UniProtKB/Swiss-Prot

H4_HUMAN
  • Note=Chromosomal aberrations involving HISTONE H4 is a cause of B-cell non-Hodgkin lymphomas (B-cell NHL). Translocation t(3;6)(q27;p21), with BCL6.

(1) University of Copenhagen DISEASES for HIST1H4E Gene

genes like me logo Genes that share disorders with HIST1H4E: view

No data available for MalaCards , OMIM , Novoseek inferred disease relationships , Genatlas and External Links for HIST1H4E Gene

Publications for HIST1H4E Gene

  1. The human and mouse replication-dependent histone genes. (PMID: 12408966) Marzluff W.F. … Maltais L.J. (Genomics 2002) 2 3 4
  2. Human histone gene organization: nonregular arrangement within a large cluster. (PMID: 9119399) Albig W. … Doenecke D. (Genomics 1997) 2 3 4
  3. The human histone gene cluster at the D6S105 locus. (PMID: 9439656) Albig W. … Doenecke D. (Hum. Genet. 1997) 3 4
  4. Protein-DNA interactions in vivo upstream of a cell cycle-regulated human H4 histone gene. (PMID: 3035717) Pauli U. … Nick H. (Science 1987) 3 4
  5. Transcriptional activation of the integrated chromatin-associated human immunodeficiency virus type 1 promoter. (PMID: 9566873) El Kharroubi A. … Martin M.A. (Mol. Cell. Biol. 1998) 3

Products for HIST1H4E Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate HIST1H4E
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat
  • Predesigned siRNA for gene silencing in human,mouse,rat for HIST1H4E
  • Block miRNA regulation of HIST1H4E using miScript Target Protectors

Sources for HIST1H4E Gene

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