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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

HIST1H3J Gene

protein-coding GIFtS: 49
GCID: GC06M027920

Histone Cluster 1, H3j

(Previous names: H3 histone family, member J, histone 1, H3j)
(Previous symbol: H3FJ)

3 related diseases
at

MalaCards

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, ¹⁰fRNAdb, ¹²H-InvDB, ¹³NCBI, ¹⁴NONCODE, and/or ¹⁵RNAdb)
About This Section

Aliases
Histone Cluster 1, H3j¹ ²		H3FI³
H3FJ¹ ² ³ ⁵		H3FK³
H3 Histone Family, Member J¹ ²		H3FL³
Histone 1, H3j¹ ²		Histone H3/A³
Histone H3/J² ³		Histone H3/B³
H3/j²		Histone H3/C³
Histone H3.1²		Histone H3/D³
H3FA³		Histone H3/F³
H3FB³		Histone H3/H³
H3FC³		Histone H3/I³
H3FD³		Histone H3/K³
H3FF³		Histone H3/L³
H3FH³

External Ids:	HGNC: 4774¹	Entrez Gene: 8356²	Ensembl: ENSG00000197153⁷	OMIM: 602817⁵	UniProtKB: P68431³

Export aliases for HIST1H3J gene to outside databases

Previous GC identifers: GC06M027916 GC06M027966 GC06M027862 GC06M027665

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for HIST1H3J Gene:

Histones are basic nuclear proteins that are responsible for the nucleosome structure of the chromosomal fiber in

eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which

approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with

linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This gene is

intronless and encodes a member of the histone H3 family. Transcripts from this gene lack polyA tails but instead

contain a palindromic termination element. This gene is found in the small histone gene cluster on chromosome

6p22-p21.3. (provided by RefSeq, Jul 2008)

GeneCards Summary for HIST1H3J Gene:

HIST1H3J (histone cluster 1, H3j) is a protein-coding gene. Diseases associated with HIST1H3J include systemic lupus erythematosus, and lupus erythematosus, and among its related super-pathways are UVB-Induced MAPK Signaling and Systemic lupus erythematosus. An important paralog of this gene is HIST2H3D.

UniProtKB/Swiss-Prot: H31_HUMAN, P68431

Function: Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to

the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription

regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of

post-translational modifications of histones, also called histone code, and nucleosome remodeling

Gene Wiki entry for HIST1H3J Gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000006.11 NC_018917.2 NT_007592.15

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the HIST1H3J gene promoter:
TBP Pax-5 AML1a Lmo2 MIF-1 Evi-1 HOXA5 FOXO4 ZID
Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: HIST1H3J promoter sequence

Search SABiosciences Chromatin IP Primers for HIST1H3J

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat HIST1H3J

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 6p22.1 Ensembl cytogenetic band: 6p22.1 HGNC cytogenetic band: 6p22.1

HIST1H3J Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
HIST1H3J gene location

GeneLoc information about chromosome 6 GeneLoc Exon Structure

GeneLoc location for GC06M027920: view genomic region (about GC identifiers)

Start:	27,858,093 bp from pter	End:	27,860,884 bp from pter
Size:	2,792 bases	Orientation:	minus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE ¹MOPED, ²PaxDb, and ³MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: H31_HUMAN, P68431 (See protein sequence)

Recommended Name: Histone H3.1

Size: 136 amino acids; 15404 Da

Subunit: The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one

H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA

Subcellular location: Nucleus. Chromosome

Developmental stage: Expressed during S phase, then expression strongly decreases as cell division slows down during

the process of differentiation

Miscellaneous: This histone is only present in mammals and is enriched in acetylation of Lys-15 and dimethylation of

Lys-10 (H3K9me2)

6/56 PDB 3D structures from and Proteopedia for HIST1H3J (see all 56):

1CS9 (3D)

1CT6 (3D)

1Q3L (3D)

2B2T (3D)

2B2U (3D)

2B2V (3D)

Secondary accessions: A0PJT7 A5PLR1 P02295 P02296 P16106 Q6ISV8 Q6NWP8 Q6NWP9 Q6NXU4 Q71DJ3 Q93081

Explore the universe of human proteins at neXtProt for HIST1H3J: NX_P68431

Explore proteomics data for HIST1H3J at MOPED

Post-translational modifications:

UniProtKB: Acetylation is generally linked to gene activation. Acetylation on Lys-10 (H3K9ac) impairs methylation at Arg-9

(H3R8me2s). Acetylation on Lys-19 (H3K18ac) and Lys-24 (H3K24ac) favors methylation at Arg-18 (H3R17me)

UniProtKB: Citrullination at Arg-9 (H3R8ci) and/or Arg-18 (H3R17ci) by PADI4 impairs methylation and represses transcription

UniProtKB: Asymmetric dimethylation at Arg-18 (H3R17me2a) by CARM1 is linked to gene activation. Symmetric dimethylation at Arg-9

(H3R8me2s) by PRMT5 is linked to gene repression. Asymmetric dimethylation at Arg-3 (H3R2me2a) by PRMT6 is linked to

gene repression and is mutually exclusive with H3 Lys-5 methylation (H3K4me2 and H3K4me3). H3R2me2a is present at the

3' of genes regardless of their transcription state and is enriched on inactive promoters, while it is absent on

active promoters

UniProtKB: Methylation at Lys-5 (H3K4me), Lys-37 (H3K36me) and Lys-80 (H3K79me) are linked to gene activation. Methylation at

Lys-5 (H3K4me) facilitates subsequent acetylation of H3 and H4. Methylation at Lys-80 (H3K79me) is associated with DNA

double-strand break (DSB) responses and is a specific target for TP53BP1. Methylation at Lys-10 (H3K9me) and Lys-28

(H3K27me) are linked to gene repression. Methylation at Lys-10 (H3K9me) is a specific target for HP1 proteins (CBX1,

CBX3 and CBX5) and prevents subsequent phosphorylation at Ser-11 (H3S10ph) and acetylation of H3 and H4. Methylation

at Lys-5 (H3K4me) and Lys-80 (H3K79me) require preliminary monoubiquitination of H2B at 'Lys-120'. Methylation at

Lys-10 (H3K9me) and Lys-28 (H3K27me) are enriched in inactive X chromosome chromatin. Monomethylation at Lys-57

(H3K56me1) by EHMT2/G9A in G1 phase promotes interaction with PCNA and is required for DNA replication

UniProtKB: Phosphorylated at Thr-4 (H3T3ph) by GSG2/haspin during prophase and dephosphorylated during anaphase. Phosphorylation

at Ser-11 (H3S10ph) by AURKB is crucial for chromosome condensation and cell-cycle progression during mitosis and

meiosis. In addition phosphorylation at Ser-11 (H3S10ph) by RPS6KA4 and RPS6KA5 is important during interphase because

it enables the transcription of genes following external stimulation, like mitogens, stress, growth factors or UV

irradiation and result in the activation of genes, such as c-fos and c-jun. Phosphorylation at Ser-11 (H3S10ph), which

is linked to gene activation, prevents methylation at Lys-10 (H3K9me) but facilitates acetylation of H3 and H4.

Phosphorylation at Ser-11 (H3S10ph) by AURKB mediates the dissociation of HP1 proteins (CBX1, CBX3 and CBX5) from

heterochromatin. Phosphorylation at Ser-11 (H3S10ph) is also an essential regulatory mechanism for neoplastic cell

transformation. Phosphorylated at Ser-29 (H3S28ph) by MLTK isoform 1, RPS6KA5 or AURKB during mitosis or upon

ultraviolet B irradiation. Phosphorylation at Thr-7 (H3T6ph) by PRKCB is a specific tag for epigenetic transcriptional

activation that prevents demethylation of Lys-5 (H3K4me) by LSD1/KDM1A. At centromeres, specifically phosphorylated at

Thr-12 (H3T11ph) from prophase to early anaphase, by DAPK3 and PKN1. Phosphorylation at Thr-12 (H3T11ph) by PKN1 is a

specific tag for epigenetic transcriptional activation that promotes demethylation of Lys-10 (H3K9me) by KDM4C/JMJD2C.

Phosphorylation at Thr-12 (H3T11ph) by chromatin-associated CHEK1 regulates the transcription of cell cycle regulatory

genes by modulating acetylation of Lys-10 (H3K9ac). Phosphorylation at Tyr-42 (H3Y41ph) by JAK2 promotes exclusion of

CBX5 (HP1 alpha) from chromatin

UniProtKB: Monoubiquitinated by RAG1 in lymphoid cells, monoubiquitination is required for V(D)J recombination (By similarity).

Ubiquitinated by the CUL4-DDB-RBX1 complex in response to ultraviolet irradiation. This may weaken the interaction

between histones and DNA and facilitate DNA accessibility to repair proteins

UniProtKB: Lysine deamination at Lys-5 (H3K4all) to form allysine is mediated by LOXL2. Allysine formation by LOXL2 only takes

place on H3K4me3 and results in gene repression (PubMed:22483618)

UniProtKB: Crotonylation (Kcr) is specifically present in male germ cells and marks testis-specific genes in post-meiotic cells,

including X-linked genes that escape sex chromosome inactivation in haploid cells. Crotonylation marks active

promoters and enhancers and confers resistance to transcriptional repressors. It is also associated with

post-meiotically activated genes on autosomes

View modification sites using PhosphoSitePlus

View neXtProt modification sites for NX_P68431

HIST1H3J Protein expression data from MOPED¹, PaxDb² and MAXQB³ : About this image

REFSEQ proteins: NP_003526.1

ENSEMBL proteins:

ENSP00000352252

Reactome Protein details: P68431
Human Recombinant Protein Products for HIST1H3J:

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Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0000786	nucleosome	--	--
GO:0005576	extracellular region	--	--
GO:0005654	nucleoplasm	--	--

HIST1H3J for ontologies About GeneDecksing

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

HGNC Gene Families:

HIST: Histones / Replication-dependent

3 InterPro protein domains:

IPR000164 Histone_H3

IPR009072 Histone-fold

IPR007125 Histone_core_D

Graphical View of Domain Structure for InterPro Entry P68431

ProtoNet protein and cluster: P68431

UniProtKB/Swiss-Prot: H31_HUMAN, P68431

Similarity: Belongs to the histone H3 family

HIST1H3J for domains About GeneDecksing

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
About This Section

Molecular Function:

UniProtKB/Swiss-Prot Summary: H31_HUMAN, P68431

Function: Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to

the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription

regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of

post-translational modifications of histones, also called histone code, and nucleosome remodeling

Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0003677	DNA binding	--	--
GO:0005515	protein binding	--	--
GO:0046982	protein heterodimerization activity	--	--

HIST1H3J for ontologies About GeneDecksing

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inGenious Targeting Laboratory - Custom generated mouse model solutions for HIST1H3J

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In Situ Assay
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Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for HIST1H3J

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
About This Section

SuperPaths for HIST1H3J About (see all 9)

See pathways by source

SuperPath

Contained pathways About

UVA-Induced MAPK Signaling

UVB-Induced MAPK Signaling

0.38

UVA-Induced MAPK Signaling

0.38

Alcoholism

Alcoholism

0.34

Systemic lupus erythematosus

0.34

Rho Family GTPases

ERK Signaling

0.61

TGF-Beta Pathway

MAPK Family Pathway

0.60

Apoptotic Pathways in Synovial Fibroblasts

Nuclear Receptor Activation by Vitamin-A

0.57

Pathways by source See SuperPaths
Show all pathways

5/8 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for HIST1H3J (see all 8)

	Nuclear Receptor Activation by Vitamin-A
	PKA Signaling
	UVB-Induced MAPK Signaling
	Interferon Pathway
	Crosstalk Between CARM1 and ESRs

5/6 Reactome Pathways for HIST1H3J (see all 6)

	Amyloids
	Hemostasis
	Factors involved in megakaryocyte development and platelet production
	Meiosis
	Meiotic Recombination

3 Kegg Pathways (Kegg details for HIST1H3J):

	Alcoholism
	Transcriptional misregulation in cancer
	Systemic lupus erythematosus

HIST1H3J for pathways About GeneDecksing

Interactions:

Search SABiosciences Gene Network Central^TM Interacting Genes and Proteins Networks for HIST1H3J

STRING Interaction Network Preview (showing 3 interactants - click image to see more details)

5/190 Interacting proteins for HIST1H3J (P68431^{1, 2, 3} ENSP00000352252⁴) via UniProtKB, MINT, STRING, and/or I2D (see all 190)

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
CCDC101	Q96ES7²^,³	MINT-8208820 MINT-8208994 MINT-8209533 MINT-8209481 MINT-8208878 MINT-8208960 MINT-8209125 MINT-8209567 MINT-8208901 MINT-8209070 MINT-8209550 MINT-8208976 MINT-8209091 MINT-8209584 MINT-8209261 MINT-8209449 MINT-8209516 MINT-8208834 MINT-8209427 MINT-8208806 MINT-8208846 MINT-8208860 MINT-8209498 MINT-8209465 MINT-8209145 MINT-8208780 I2D: score=1
AIRE	O43918²^,³	MINT-6542493 MINT-6542602 MINT-6542217 MINT-6542176 MINT-6542437 MINT-6542623 MINT-6542513 MINT-6542121 MINT-6542585 MINT-6542551 MINT-6542098 MINT-6542155 MINT-6542420 MINT-6542202 MINT-6542385 MINT-6542408 MINT-6542567 MINT-6542476 MINT-6542533 MINT-6542137 I2D: score=3
HIST1H4A	P62805²^,³	MINT-6543302 MINT-7220359 I2D: score=7
HIST1H4B	P62805²^,³	MINT-6543302 MINT-7220359 I2D: score=7
HIST1H4C	P62805²^,³	MINT-6543302 MINT-7220359 I2D: score=7

About this table

Gene Ontology (GO): 4 biological process terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0006334	nucleosome assembly	--	--
GO:0007596	blood coagulation	--	--
GO:0051320	S phase	--	--
GO:0060968	regulation of gene silencing	--	--

HIST1H3J for ontologies About GeneDecksing

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, IUPHAR, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

Browse Small Molecules at EMD Millipore

Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for HIST1H3J (H31)

Search CenterWatch for drugs/clinical trials and news about HIST1H3J / H31

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
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Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for HIST1H3J gene:

NM_003535.2

Unigene Cluster for HIST1H3J:

Histone cluster 1, H3j

Hs.484990

Unigene Representative Sequence: AL522145

2 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000479986 ENST00000359303(uc003nka.3)

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1 DOTS entry:

DT.91669233

8 AceView cDNA sequences:

CR612219 NM_003535 AL522145 BX371361 BX368993 BF511773 AI970475 AL522144

GeneLoc Exon Structure

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

HIST1H3J expression in normal human tissues (normalized intensities) HIST1H3J embryonic expression: see
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>^2/3
CGAP TAG: --

About this image

HIST1H3J expression in embryonic tissues and stem cells About this table

Data from LifeMap, the Embryonic Development and Stem Cells Database

5/1 selected tissues (see all 1) fully expand


Adipose (Muscoskeletal System)
Mesenchymal Progenitor Cells - Passage 2 (Differentiation of human pluripotent stem...

See HIST1H3J Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for HIST1H3J

SOURCE GeneReport for Unigene cluster: Hs.484990

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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of eukaryotes.

Orthologs for HIST1H3J gene from 5/11 species (see all 11) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
mouse (Mus musculus)	Mammalia	Hist1h3g¹	histone cluster 1, H3g	85.05(n) 100(a)		97908 NM_145073.2 NP_659539.1
lizard (Anolis carolinensis)	Reptilia	HIST2H3A⁶	Histone H3	96(a)	1 → many	GL343279.1(552493-552912)
zebrafish (Danio rerio)	Actinopterygii	LOC100334933¹	histone H3.2-like	82.6(n) 99.26(a)		100334933 XM_002666905.1 XP_002666951.1
thale cress (Arabidopsis thaliana)	eudicotyledons	AT4G40030¹	histone H3	74.02(n) 96.32(a)		830164 NM_001085047.1 NP_001078516.1
rice (Oryza sativa)	Liliopsida	Os06g0130900¹	hypothetical protein	80.88(n) 96.32(a)		4340006 NM_001063228.1 NP_001056693.1

ENSEMBL Gene Tree for HIST1H3J (if available)
TreeFam Gene Tree for HIST1H3J (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
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Paralogs for HIST1H3J gene

HIST1H3I¹ ² HIST1H3H¹ ² HIST1H3F¹ ² HIST1H3C¹ ² HIST1H3D¹ ² HIST1H3A¹ ² HIST1H3E¹ ² HIST1H3G¹ ²

HIST1H3B¹ ² HIST2H3D² HIST2H3C² H3F3C² HIST3H3² H3F3A² H3F3B² HIST2H3A²

9 SIMAP similar genes for HIST1H3J using alignment to 1 protein entry: H31_HUMAN:

HIST3H3 H3F3B H3F3A HIST2H3A HIST2H3C HIST2H3D

HIST2H3PS2 H3F3C CENPA

HIST1H3J for paralogs About GeneDecksing

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, ⁴UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Valid	Clinical significance	Chr 6 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs74982211^1,2	C	--	27857748(+)	`CAGTGC/ACCGTT`	1	--	ds500¹		2		CSA WA	120
rs115106149^1,2	C,F	--	27857831(+)	`AAAGGA/GCAGCA`	1	--	ds500¹		1		WA	118
rs115908172^1,2	C,F	--	27857925(+)	`CCCTTG/ATGAGA`	1	--	ds500¹		1		WA	118
rs181627761^1,2		--	27857967(+)	`CTTAGA/GAGACA`	1	--	ds500¹		0	--	--	--	--
rs148510300^1,2		--	27857984(+)	`ACTGCA/CAGGAA`	1	--	ds500¹		0	--	--	--	--
rs73386651^1,2	C,F	--	27858040(+)	`TTTAAA/GGTTGA`	1	--	ds500¹		3		WA NA	240
rs184135815^1,2		--	27858046(+)	`GTTGAC/TTTAAG`	1	--	ds500¹		0	--	--	--	--
rs202049846^1,2	C	--	27858146(+)	`CCCAAG/AATAGA`	1	--	ut3¹		1		EU	1323
rs201216167^1,2		--	27858151(+)	`GATAGA/GGCAGG`	1	--	ut3¹		0	--	--	--	--
rs200973^1,2	C,F,A,H	--	27858421(+)	`ATCTCA/GCGCAA`	2	R	syn¹ ese³		24		MN EA NS NA WA CSA EU	9116

HapMap Linkage Disequilibrium report for HIST1H3J (27858093 - 27860884 bp)

Structural Variations
Database of Genomic Variants (DGV) 1 variation for HIST1H3J: About this table

Variant ID	Type	Subtype	PubMed ID
nsv883512	CNV	Gain	21882294

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

HIST1H3J for disorders           About GeneDecksing

OMIM gene information: 602817    OMIM disorders: --

3 diseases for HIST1H3J:    About MalaCards

systemic lupus erythematosus lupus erythematosus breast cancer

Export disorders for HIST1H3J gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for HIST1H3J gene, integrated from 9 sources (see all 55):
(articles sorted by number of sources associating them with HIST1H3J)

Utopia: connect your pdf to the dynamic
world of online information

The human and mouse replication-dependent histone genes. (PubMed id 12408966)^{1, 2, 3} Marzluff W.F....Maltais L.J. (2002)
The human histone gene cluster at the D6S105 locus. (PubMed id 9439656)^{1, 2, 3} Albig W. and Doenecke D. (1997)
Histone H3 lysine 56 methylation regulates DNA replication through its interaction wwith PCNA. (PubMed id 22387026)² Yu Y.... Grunstein M. (2012)
Methods for quantification of in vivo changes in prote in ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)¹ Udeshi N.D....Carr S.A. (2012)
Lysyl oxidase-like 2 deaminates lysine 4 in histone H3. (PubMed id 22483618)² Herranz N.... Peiro S. (2012)
Interactome study suggests multiple cellular functions of hepatoma-derived growth factor (HDGF). (PubMed id 21907836)¹ Zhao J....Yang P. (2011)
Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification. (PubMed id 21925322)² Tan M.... Zhao Y. (2011)
Activity-based chemical proteomics accelerates inhibi tor development for deubiquitylating enzymes. (PubMed id 22118674)¹ Altun M....Kessler B.M. (2011)
Structural basis for human PHF2 Jumonji domain intera ction with metal ions. (PubMed id 21167174)¹ Horton J.R....Cheng X. (2011)
TRIM24 links a non-canonical histone signature to breast cancer. (PubMed id 21164480)¹ Tsai W.W.... Barton M.C. (2010)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 8356	HGNC: 4774	AceView: HIST1H3J	Ensembl:ENSG00000197153	euGenes: HUgn8356
ECgene: HIST1H3J	Kegg: 8356	H-InvDB: HIST1H3J

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
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Name	Description
PharmGKB entry for HIST1H3J	Pharmacogenomics, SNPs, Pathways

Intellectual Property for HIST1H3J gene
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Patent Information for HIST1H3J gene:
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HIST1H3J Gene

Histone Cluster 1, H3j

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HIST1H3J (Gene Symbol)
Histone Cluster 1, H3j
H3FJ
H3 Histone Family, Member J
Histone 1, H3j
Histone H3/J
H3/j
Histone H3.1
H3FA
H3FB
H3FC
H3FD
H3FF
H3FH
H3FI
H3FK
H3FL
Histone H3/A
Histone H3/B
Histone H3/C
Histone H3/D
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Histone H3/H
Histone H3/I
Histone H3/K
Histone H3/L

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HIST1H3J Gene

Histone Cluster 1, H3j

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