Aliases for HIST1H3B Gene
Aliases for HIST1H3B Gene
- Histone Cluster 1 H3 Family Member B 2 3 5
- H3 Histone Family, Member L 2 3
- Histone Cluster 1, H3b 2 3
- Histone 1, H3b 2 3
- Histone H3/L 3 4
- H3FL 3 4
- HIST1H3A HIST1H3B HIST1H3C HIST1H3D HIST1H3E HIST1H3F HIST1H3G HIST1H3H HIST1H3I HIST1H3J 4
- Histone H3.1 3
- Histone H3/A 4
- Histone H3/B 4
- Histone H3/C 4
- Histone H3/D 4
- Histone H3/F 4
- Histone H3/H 4
External Ids for HIST1H3B Gene
- HGNC: 4776
- Entrez Gene: 8358
- Ensembl: ENSG00000274267
- OMIM: 602819
- UniProtKB: P68431
Previous HGNC Symbols for HIST1H3B Gene
- H3FL
Previous GeneCards Identifiers for HIST1H3B Gene
- GC06M026089
- GC06M026139
- GC06M025974
Summaries for HIST1H3B Gene
-
Histones are basic nuclear proteins that are responsible for the nucleosome structure of the chromosomal fiber in eukaryotes. This structure consists of approximately 146 bp of DNA wrapped around a nucleosome, an octamer composed of pairs of each of the four core histones (H2A, H2B, H3, and H4). The chromatin fiber is further compacted through the interaction of a linker histone, H1, with the DNA between the nucleosomes to form higher order chromatin structures. This gene is intronless and encodes a replication-dependent histone that is a member of the histone H3 family. Transcripts from this gene lack polyA tails; instead, they contain a palindromic termination element. This gene is found in the large histone gene cluster on chromosome 6p22-p21.3. [provided by RefSeq, Aug 2015]
GeneCards Summary for HIST1H3B Gene
HIST1H3B (Histone Cluster 1 H3 Family Member B) is a Protein Coding gene. Among its related pathways are Activated PKN1 stimulates transcription of AR (androgen receptor) regulated genes KLK2 and KLK3 and Meiosis. GO annotations related to this gene include protein heterodimerization activity and histone binding. An important paralog of this gene is HIST1H3H.
UniProtKB/Swiss-Prot for HIST1H3B Gene
-
Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HIST1H3B Gene
Genomics for HIST1H3B Gene
Regulatory Elements for HIST1H3B Gene
Enhancers for HIST1H3B Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH06G025535 | 1 | FANTOM5 | 3.5 | +496.5 | 496510 | 0.0 | PKNOX1 ATF1 ARNT E2F7 TCF12 ZNF766 ELK1 GATA2 SMARCB1 SMARCA4 | LOC101928663 RPL21P68 CARMIL1 LOC100533655 CMAHP HIST1H4A HIST1H3B HIST1H4B HIST1H2AB HIST1H3A |
| GH06G026019 | 1.9 | FANTOM5 ENCODE dbSUPER | 0.7 | +4.5 | 4474 | 16.2 | CREB3L1 MLX AGO1 ZFP64 DMAP1 FEZF1 YY1 SLC30A9 ZNF143 ZNF263 | ABT1 HMGN4 ENSG00000272462 BTN3A2 ZNF322 HIST1H1C BTN3A1 NUP50P2 HIST1H2APS5 BTN3A3 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around HIST1H3B on UCSC Golden Path with GeneCards custom track
- Transcription factor binding sites by QIAGEN in the HIST1H3B gene promoter:
Regulatory Element Products
Genomic Location for HIST1H3B Gene
- Chromosome:
- 6
- Start:
- 26,031,589 bp from pter
- End:
- 26,032,060 bp from pter
- Size:
- 472 bases
- Orientation:
- Minus strand
Genomic View for HIST1H3B Gene
Genes around HIST1H3B on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 6p22.2 by Ensembl
- 6p22.2 by Entrez Gene
- 6p22.2 by HGNC
HIST1H3B Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for HIST1H3B Gene
Proteins for HIST1H3B Gene
-
Protein details for HIST1H3B Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- P68431-H31_HUMAN
- Recommended name:
- Histone H3.1
- Protein Accession:
- P68431
- A0PJT7
- A5PLR1
- P02295
- P02296
- P16106
- Q6ISV8
- Q6NWP8
- Q6NWP9
- Q6NXU4
- Q71DJ3
- Q93081
Protein attributes for HIST1H3B Gene
- Size:
- 136 amino acids
- Molecular mass:
- 15404 Da
- Quaternary structure:
-
- The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA.
- The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA.
- The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA.
- The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA.
- The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA.
- The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA.
- The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA.
- The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA.
- The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA.
- The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA.
- Miscellaneous:
-
- This histone is only present in mammals and is enriched in acetylation of Lys-15 and dimethylation of Lys-10 (H3K9me2).
Protein Expression for HIST1H3B Gene
Post-translational modifications for HIST1H3B Gene
- Acetylation is generally linked to gene activation. Acetylation on Lys-10 (H3K9ac) impairs methylation at Arg-9 (H3R8me2s). Acetylation on Lys-19 (H3K18ac) and Lys-24 (H3K24ac) favors methylation at Arg-18 (H3R17me). Acetylation at Lys-123 (H3K122ac) by EP300/p300 plays a central role in chromatin structure: localizes at the surface of the histone octamer and stimulates transcription, possibly by promoting nucleosome instability.
- Asymmetric dimethylation at Arg-18 (H3R17me2a) by CARM1 is linked to gene activation. Symmetric dimethylation at Arg-9 (H3R8me2s) by PRMT5 is linked to gene repression. Asymmetric dimethylation at Arg-3 (H3R2me2a) by PRMT6 is linked to gene repression and is mutually exclusive with H3 Lys-5 methylation (H3K4me2 and H3K4me3). H3R2me2a is present at the 3 of genes regardless of their transcription state and is enriched on inactive promoters, while it is absent on active promoters.
- Citrullination at Arg-9 (H3R8ci) and/or Arg-18 (H3R17ci) by PADI4 impairs methylation and represses transcription.
- Crotonylation (Kcr) is specifically present in male germ cells and marks testis-specific genes in post-meiotic cells, including X-linked genes that escape sex chromosome inactivation in haploid cells. Crotonylation marks active promoters and enhancers and confers resistance to transcriptional repressors. It is also associated with post-meiotically activated genes on autosomes.
- Lysine deamination at Lys-5 (H3K4all) to form allysine is mediated by LOXL2. Allysine formation by LOXL2 only takes place on H3K4me3 and results in gene repression (PubMed:22483618).
- Methylation at Lys-5 (H3K4me), Lys-37 (H3K36me) and Lys-80 (H3K79me) are linked to gene activation. Methylation at Lys-5 (H3K4me) facilitates subsequent acetylation of H3 and H4. Methylation at Lys-80 (H3K79me) is associated with DNA double-strand break (DSB) responses and is a specific target for TP53BP1. Methylation at Lys-10 (H3K9me) and Lys-28 (H3K27me) are linked to gene repression. Methylation at Lys-10 (H3K9me) is a specific target for HP1 proteins (CBX1, CBX3 and CBX5) and prevents subsequent phosphorylation at Ser-11 (H3S10ph) and acetylation of H3 and H4. Methylation at Lys-5 (H3K4me) and Lys-80 (H3K79me) require preliminary monoubiquitination of H2B at Lys-120. Methylation at Lys-10 (H3K9me) and Lys-28 (H3K27me) are enriched in inactive X chromosome chromatin. Monomethylation at Lys-57 (H3K56me1) by EHMT2/G9A in G1 phase promotes interaction with PCNA and is required for DNA replication.
- Monoubiquitinated by RAG1 in lymphoid cells, monoubiquitination is required for V(D)J recombination (By similarity). Ubiquitinated by the CUL4-DDB-RBX1 complex in response to ultraviolet irradiation. This may weaken the interaction between histones and DNA and facilitate DNA accessibility to repair proteins.
- Phosphorylated at Thr-4 (H3T3ph) by GSG2/haspin during prophase and dephosphorylated during anaphase. Phosphorylation at Ser-11 (H3S10ph) by AURKB is crucial for chromosome condensation and cell-cycle progression during mitosis and meiosis. In addition phosphorylation at Ser-11 (H3S10ph) by RPS6KA4 and RPS6KA5 is important during interphase because it enables the transcription of genes following external stimulation, like mitogens, stress, growth factors or UV irradiation and result in the activation of genes, such as c-fos and c-jun. Phosphorylation at Ser-11 (H3S10ph), which is linked to gene activation, prevents methylation at Lys-10 (H3K9me) but facilitates acetylation of H3 and H4. Phosphorylation at Ser-11 (H3S10ph) by AURKB mediates the dissociation of HP1 proteins (CBX1, CBX3 and CBX5) from heterochromatin. Phosphorylation at Ser-11 (H3S10ph) is also an essential regulatory mechanism for neoplastic cell transformation. Phosphorylated at Ser-29 (H3S28ph) by MLTK isoform 1, RPS6KA5 or AURKB during mitosis or upon ultraviolet B irradiation. Phosphorylation at Thr-7 (H3T6ph) by PRKCB is a specific tag for epigenetic transcriptional activation that prevents demethylation of Lys-5 (H3K4me) by LSD1/KDM1A. At centromeres, specifically phosphorylated at Thr-12 (H3T11ph) from prophase to early anaphase, by DAPK3 and PKN1. Phosphorylation at Thr-12 (H3T11ph) by PKN1 is a specific tag for epigenetic transcriptional activation that promotes demethylation of Lys-10 (H3K9me) by KDM4C/JMJD2C. Phosphorylation at Thr-12 (H3T11ph) by chromatin-associated CHEK1 regulates the transcription of cell cycle regulatory genes by modulating acetylation of Lys-10 (H3K9ac). Phosphorylation at Tyr-42 (H3Y41ph) by JAK2 promotes exclusion of CBX5 (HP1 alpha) from chromatin.
- Ubiquitination at posLast=116116
- Modification sites at PhosphoSitePlus
Other Protein References for HIST1H3B Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
- EMD Millipore Complete listing of Mono and Polychlonal Antibodies for HIST1H3B
- antibodies-online Antibodies for HIST1H3B: See all 15
- Search GeneTex for Antibodies for HIST1H3B
Protein Products
-
OriGene Purified Proteins for HIST1H3B
- Search Origene for MassSpec and Protein Over-expression Lysates for HIST1H3B
- Origene Custom Protein Services for HIST1H3B
- Novus Biologicals lysates for HIST1H3B
- GeneTex Proteins for HIST1H3B
Assay Products
No data available for DME Specific Peptides for HIST1H3B Gene
Domains & Families for HIST1H3B Gene
Gene Families for HIST1H3B Gene
- HGNC:
Protein Domains for HIST1H3B Gene
- InterPro:
- ProtoNet:
Graphical View of Domain Structure for InterPro Entry
P68431- Family:
-
- Belongs to the histone H3 family.
No data available for Suggested Antigen Peptide Sequences for HIST1H3B Gene
Function for HIST1H3B Gene
Molecular function for HIST1H3B Gene
- UniProtKB/Swiss-Prot Function:
- Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0003677 | DNA binding | IEA | -- |
| GO:0005515 | protein binding | IPI | 10949293 |
| GO:0042393 | histone binding | IPI | 20498094 |
| GO:0045296 | cadherin binding | IDA | 25468996 |
| GO:0046982 | protein heterodimerization activity | IEA | -- |
Phenotypes for HIST1H3B Gene
- GenomeRNAi human phenotypes for HIST1H3B:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
-
ViGene Biosciences lentiviral particle packaged cDNA for HIST1H3B gene
-
ViGene Biosciences ready-to-package AAV shRNAs for HIST1H3B gene
- Search ViGene Biosciences for HIST1H3B
CRISPR Products
-
OriGene CRISPR knockouts for HIST1H3B
-
Santa Cruz Biotechnology (SCBT) CRISPR for HIST1H3B
- GenScript: Design CRISPR guide RNA sequences for HIST1H3B
miRNA for HIST1H3B Gene
- miRTarBase miRNAs that target HIST1H3B
-
- hsa-mir-1-3p (MIRT002746)
- hsa-mir-34a-5p (MIRT025549)
- hsa-mir-877-5p (MIRT037316)
- hsa-mir-652-3p (MIRT039555)
- hsa-mir-193b-3p (MIRT041347)
- hsa-mir-330-3p (MIRT043828)
- hsa-mir-320a (MIRT044526)
- hsa-mir-93-5p (MIRT048813)
- hsa-mir-23a-3p (MIRT050425)
- hsa-let-7b-5p (MIRT052057)
- hsa-mir-3909 (MIRT052884)
- hsa-mir-760 (MIRT257423)
- hsa-mir-6822-3p (MIRT257428)
- hsa-mir-5693 (MIRT507025)
- hsa-mir-7856-5p (MIRT507026)
- hsa-mir-3658 (MIRT507027)
- hsa-mir-6839-3p (MIRT507028)
- hsa-mir-4507 (MIRT507029)
- hsa-mir-3940-5p (MIRT507030)
- hsa-mir-8057 (MIRT507031)
- hsa-mir-499a-5p (MIRT507032)
- hsa-mir-208b-3p (MIRT507033)
- hsa-mir-208a-3p (MIRT507034)
- hsa-mir-629-5p (MIRT507035)
- hsa-mir-4502 (MIRT507036)
- hsa-mir-4766-5p (MIRT507037)
- hsa-mir-146a-3p (MIRT507038)
- hsa-mir-4499 (MIRT507039)
- hsa-mir-8087 (MIRT507040)
- hsa-mir-4432 (MIRT507041)
- hsa-mir-1276 (MIRT507042)
- hsa-mir-190a-3p (MIRT511666)
- hsa-mir-374b-5p (MIRT511667)
- hsa-mir-374a-5p (MIRT511668)
- hsa-mir-4712-3p (MIRT511669)
- hsa-mir-5011-5p (MIRT511670)
- hsa-mir-410-3p (MIRT511671)
- hsa-mir-5692c (MIRT511672)
- hsa-mir-5692b (MIRT511673)
- hsa-mir-369-3p (MIRT511674)
- hsa-mir-1277-5p (MIRT511675)
- hsa-mir-6748-5p (MIRT511676)
- hsa-mir-4483 (MIRT511677)
- hsa-mir-1293 (MIRT511678)
- hsa-mir-6766-5p (MIRT511679)
- hsa-mir-6756-5p (MIRT511680)
- hsa-mir-6745 (MIRT511681)
- hsa-mir-363-5p (MIRT511682)
- hsa-mir-6824-5p (MIRT696545)
- hsa-mir-539-5p (MIRT696546)
- hsa-mir-6783-5p (MIRT696547)
- hsa-mir-144-3p (MIRT696548)
miRNA Products
- Search ViGene Biosciences for HIST1H3B
Inhibitory RNA Products
- Origene RNAi, siRNA, and shRNA products in human, mouse, rat for HIST1H3B
- Browse OriGene Inhibitory RNA Products For HIST1H3B
-
ViGene Biosciences ready-to-package AAV shRNAs for HIST1H3B gene
Clone Products
-
OriGene ORF clones in human for HIST1H3B
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Sino Biological Human cDNA Clone for HIST1H3B
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
- Addgene plasmids for HIST1H3B
Cell Line Products
-
Horizon Cell Lines for HIST1H3B
-
ViGene Biosciences adenoviral particle packaged cDNA for HIST1H3B gene
-
ViGene Biosciences lentiviral particle packaged cDNA for HIST1H3B gene
-
ViGene Biosciences ready-to-package AAV shRNAs for HIST1H3B gene
Flow Cytometry Products
No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for HIST1H3B Gene
Localization for HIST1H3B Gene
Subcellular locations from UniProtKB/Swiss-Prot for HIST1H3B Gene
| Compartment | Confidence |
|---|---|
| extracellular | 5 |
| nucleus | 5 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000228 | nuclear chromosome | IDA | 14718166 |
| GO:0000784 | nuclear chromosome, telomeric region | IDA | 19135898 |
| GO:0000786 | nucleosome | IDA | 21636898 |
| GO:0000788 | nuclear nucleosome | IDA | 20498094 |
| GO:0005576 | extracellular region | TAS | -- |
Pathways & Interactions for HIST1H3B Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | Activated PKN1 stimulates transcription of AR (androgen receptor) regulated genes KLK2 and KLK3 |
.88
|
.34
|
| 2 | Cellular Senescence | ||
| 3 | Cell Cycle, Mitotic |
.83
|
.60
|
| 4 | Chromatin organization | ||
| 5 | Mitotic Prophase |
.57
|
|
Pathways by source for HIST1H3B Gene
1 GeneTex pathway for HIST1H3B Gene
1 BioSystems pathway for HIST1H3B Gene
54 Reactome pathways for HIST1H3B Gene
- Activated PKN1 stimulates transcription of AR (androgen receptor) regulated genes KLK2 and KLK3
- Activation of anterior HOX genes in hindbrain development during early embryogenesis
- Activation of HOX genes during differentiation
- Amyloid fiber formation
- B-WICH complex positively regulates rRNA expression
3 KEGG pathways for HIST1H3B Gene
8 Qiagen pathways for HIST1H3B Gene
Interacting Proteins for HIST1H3B Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000183 | chromatin silencing at rDNA | TAS | -- |
| GO:0006325 | chromatin organization | TAS | -- |
| GO:0006334 | nucleosome assembly | IMP | 25615412 |
| GO:0006335 | DNA replication-dependent nucleosome assembly | IDA | 14718166 |
| GO:0007596 | blood coagulation | TAS | -- |
No data available for SIGNOR curated interactions for HIST1H3B Gene
Transcripts for HIST1H3B Gene
mRNA/cDNA for HIST1H3B Gene
- (1) REFSEQ mRNAs :
- (5) Additional mRNA sequences :
- (5) Selected AceView cDNA sequences:
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for HIST1H3B Gene
CRISPR Products
-
OriGene CRISPR knockouts for HIST1H3B
-
Santa Cruz Biotechnology (SCBT) CRISPR for HIST1H3B
- GenScript: Design CRISPR guide RNA sequences for HIST1H3B
miRNA Products
- Search ViGene Biosciences for HIST1H3B
Inhibitory RNA Products
- Origene RNAi, siRNA, and shRNA products in human, mouse, rat for HIST1H3B
- Browse OriGene Inhibitory RNA Products For HIST1H3B
-
ViGene Biosciences ready-to-package AAV shRNAs for HIST1H3B gene
Clone Products
-
OriGene ORF clones in human for HIST1H3B
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Sino Biological Human cDNA Clone for HIST1H3B
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
- Addgene plasmids for HIST1H3B
Flow Cytometry Products
Expression for HIST1H3B Gene
mRNA differential expression in normal tissues according to GTEx for HIST1H3B Gene
This gene is overexpressed in Whole Blood (x10.7) and Testis (x6.2).
This gene is overexpressed in Heart (41.5), Urine (13.4), and Cervix (9.4).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for HIST1H3B Gene
- Elite partner
NURSA nuclear receptor signaling pathways regulating expression of HIST1H3B Gene:
HIST1H3BSOURCE GeneReport for Unigene cluster for HIST1H3B Gene:
Hs.533292Evidence on tissue expression from TISSUES for HIST1H3B Gene
- Nervous system(4.4)
- Spleen(4.3)
- Blood(4.1)
- Stomach(4)
Primer Products
-
OriGene qPCR primer pairs for HIST1H3B
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for HIST1H3B Gene
Orthologs for HIST1H3B Gene
This gene was present in the common ancestor of animals.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| mouse (Mus musculus) |
Mammalia | Hist2h3b 34 16 |
|
||
| chimpanzee (Pan troglodytes) |
Mammalia | LOC101057734 34 |
|
||
| tropical clawed frog (Silurana tropicalis) |
Amphibia | LOC100493036 34 |
|
||
| fruit fly (Drosophila melanogaster) |
Insecta | His3:CG31613 34 |
|
- Species where no ortholog for HIST1H3B was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- cow (Bos Taurus)
- dog (Canis familiaris)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- lizard (Anolis carolinensis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- oppossum (Monodelphis domestica)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- platypus (Ornithorhynchus anatinus)
- rainbow trout (Oncorhynchus mykiss)
- rat (Rattus norvegicus)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
- zebrafish (Danio rerio)
Paralogs for HIST1H3B Gene
Paralogs for HIST1H3B Gene
(9) SIMAP similar genes for HIST1H3B Gene using alignment to 1 proteins:
Variants for HIST1H3B Gene
| SNP ID | Clin | Chr 06 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1000232478 | -- | 26,032,723(+) | GGTAA(-/TG)TGTGT | downstream-variant-500B, upstream-variant-2KB | |
| rs1000820399 | -- | 26,033,566(+) | CCAGA(C/T)ATAAC | upstream-variant-2KB, reference, missense | |
| rs1002441844 | -- | 26,033,590(+) | GGAAA(A/G)TCGCC | upstream-variant-2KB | |
| rs1003712563 | -- | 26,032,541(+) | TCCCA(C/G)CTACT | upstream-variant-2KB | |
| rs1004562472 | -- | 26,031,631(+) | ACTGA(C/T)GAAAA | utr-variant-3-prime |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv5926n100 | CNV | gain | 25217958 |
| esv3608392 | CNV | gain | 21293372 |
| nsv1023453 | CNV | gain | 25217958 |
| nsv1026692 | CNV | loss | 25217958 |
| nsv428137 | CNV | loss | 18775914 |
| nsv509122 | CNV | insertion | 20534489 |
Residual Variation Intolerance Score:
20.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
0.13;
2.83% of all genes are more intolerant (likely to be disease-causing)
Relevant External Links for HIST1H3B Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- HIST1H3B
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for HIST1H3B Gene
Disorders for HIST1H3B Gene
Relevant External Links for HIST1H3B
No disorders were found for HIST1H3B Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HIST1H3B Gene
Publications for HIST1H3B Gene
- The human and mouse replication-dependent histone genes. (PMID: 12408966) Marzluff W.F. … Maltais L.J. (Genomics 2002) 2 3 4 64
- Human histone gene organization: nonregular arrangement within a large cluster. (PMID: 9119399) Albig W. … Doenecke D. (Genomics 1997) 2 3 4 64
- The primary structure and expression of four cloned human histone genes. (PMID: 6647026) Zhong R. … Heintz N. (Nucleic Acids Res. 1983) 2 3 4 64
- Genomewide association study for determinants of HIV-1 acquisition and viral set point in HIV-1 serodiscordant couples with quantified virus exposure. (PMID: 22174851) Lingappa J.R. … Goldstein D. (PLoS ONE 2011) 3 46 64
- Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 46 64
Products for HIST1H3B Gene
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- Mammalian expression: PiggyBac
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- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for HIST1H3B Gene
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