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Aliases for HIST1H2BPS2 Gene

Subcategory (RNA class) for HIST1H2BPS2 Gene

lncRNA

Aliases for HIST1H2BPS2 Gene

  • Histone Cluster 1 H2B Pseudogene 2 2 3 5
  • H2B Histone Family, Member I, Pseudogene 2 3
  • Histone Cluster 1, H2b, Pseudogene 2 2 3
  • Histone 1, H2b, Pseudogene 2 2 3
  • PH2B.I 3
  • PH2B/I 3
  • H2BFIP 3

External Ids for HIST1H2BPS2 Gene

ORGUL Members for HIST1H2BPS2 Gene

Previous HGNC Symbols for HIST1H2BPS2 Gene

  • H2BFIP

Previous GeneCards Identifiers for HIST1H2BPS2 Gene

  • GC06M027939
  • GC06M027834
  • GC06M027643
  • GC06M027884
  • GC06M027996

Summaries for HIST1H2BPS2 Gene

Entrez Gene Summary for HIST1H2BPS2 Gene

  • Histones are basic nuclear proteins responsible for nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This histone pseudogene is found in the small histone gene cluster on chromosome 6. [provided by RefSeq, Oct 2015]

GeneCards Summary for HIST1H2BPS2 Gene

HIST1H2BPS2 (Histone Cluster 1 H2B Pseudogene 2) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HIST1H2BPS2 Gene

Genomics for HIST1H2BPS2 Gene

Regulatory Elements for HIST1H2BPS2 Gene

Enhancers for HIST1H2BPS2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F027862 1 Ensembl ENCODE 16.9 -4.3 -4267 12.7 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF143 ZNF263 ZKSCAN8 ZKSCAN3 ZSCAN9 GUSBP2 ZSCAN26 ZKSCAN4 ZSCAN23 ZNF391 ZNF603P PGBD1
GH06F027834 1.2 FANTOM5 ENCODE 16.4 +27.1 27109 6.4 CREB3L1 FEZF1 DMAP1 YY1 SLC30A9 SP3 NFYC TBX21 MEF2D ZNF610 ZKSCAN3 ZNF391 ZKSCAN4 ZKSCAN8 HNRNPA1P1 HIST1H2BPS2 OR2B2 CD83P1 LOC442172 GPX5
GH06F027751 1.3 Ensembl ENCODE 16.3 +111.1 111060 2.9 CREB3L1 MLX DMAP1 YY1 SLC30A9 ZNF143 ZNF416 ZNF263 SP3 NFYC ZKSCAN3 ZKSCAN8 ZKSCAN4 ZSCAN23 HNRNPA1P1 ZNF603P HIST1H2BPS2 OR2B2 CD83P1 LOC442172
GH06F027726 0.2 ENCODE 16.2 +137.6 137625 0.2 HDAC1 TBP CBX3 PKNOX1 TBL1XR1 SREBF2 DEAF1 DMAP1 ZEB1 ZNF335 HNRNPA1P1 HIST1H2BPS2 CD83P1 OR2B2 LOC442172 GPX5 VN1R11P VN1R13P GPX6 ZKSCAN3
GH06F027600 0.8 Ensembl ENCODE 16.2 +262.7 262681 3.0 HDGF PKNOX1 ARNT CREB3L1 SIN3A ZNF2 ZNF302 ZNF548 ZNF263 SP3 ZKSCAN3 ZKSCAN8 ZKSCAN4 HNRNPA1P1 CD83P1 HIST1H2BPS2 LOC442172 OR2B2 VN1R11P VN1R13P
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around HIST1H2BPS2 on UCSC Golden Path with GeneCards custom track

Promoters for HIST1H2BPS2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001214452 -1400 4800 HDGF ARNT MLX ARID4B SIN3A DMAP1 ZNF207 FOS PAF1 NFYC

Genomic Location for HIST1H2BPS2 Gene

Chromosome:
6
Start:
27,864,062 bp from pter
End:
27,864,401 bp from pter
Size:
340 bases
Orientation:
Minus strand

Genomic View for HIST1H2BPS2 Gene

Genes around HIST1H2BPS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HIST1H2BPS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HIST1H2BPS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HIST1H2BPS2 Gene

Proteins for HIST1H2BPS2 Gene

Post-translational modifications for HIST1H2BPS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HIST1H2BPS2 Gene

Domains & Families for HIST1H2BPS2 Gene

Gene Families for HIST1H2BPS2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HIST1H2BPS2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HIST1H2BPS2 Gene

Function for HIST1H2BPS2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HIST1H2BPS2 Gene

Localization for HIST1H2BPS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HIST1H2BPS2 Gene

Pathways & Interactions for HIST1H2BPS2 Gene

SuperPathways for HIST1H2BPS2 Gene

No Data Available

Interacting Proteins for HIST1H2BPS2 Gene

Gene Ontology (GO) - Biological Process for HIST1H2BPS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HIST1H2BPS2 Gene

Transcripts for HIST1H2BPS2 Gene

mRNA/cDNA for HIST1H2BPS2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HIST1H2BPS2 Gene

No ASD Table

Relevant External Links for HIST1H2BPS2 Gene

GeneLoc Exon Structure for
HIST1H2BPS2
ECgene alternative splicing isoforms for
HIST1H2BPS2

Expression for HIST1H2BPS2 Gene

mRNA expression in normal human tissues for HIST1H2BPS2 Gene

NURSA nuclear receptor signaling pathways regulating expression of HIST1H2BPS2 Gene:

HIST1H2BPS2
genes like me logo Genes that share expression patterns with HIST1H2BPS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HIST1H2BPS2 Gene

Orthologs for HIST1H2BPS2 Gene

Evolution for HIST1H2BPS2 Gene

ENSEMBL:
Gene Tree for HIST1H2BPS2 (if available)
TreeFam:
Gene Tree for HIST1H2BPS2 (if available)

No data available for Orthologs for HIST1H2BPS2 Gene

Paralogs for HIST1H2BPS2 Gene

No data available for Paralogs for HIST1H2BPS2 Gene

Variants for HIST1H2BPS2 Gene

Relevant External Links for HIST1H2BPS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HIST1H2BPS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HIST1H2BPS2 Gene

Disorders for HIST1H2BPS2 Gene

No disorders were found for HIST1H2BPS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HIST1H2BPS2 Gene

Publications for HIST1H2BPS2 Gene

  1. Characterization of the H1.5 gene completes the set of human H1 subtype genes. (PMID: 9031620) Albig W. … Doenecke D. (Gene 1997) 2 3 64

Products for HIST1H2BPS2 Gene

Sources for HIST1H2BPS2 Gene

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