Free for academic non-profit institutions. Other users need a Commercial license

Aliases for HIST1H2APS5 Gene

Aliases for HIST1H2APS5 Gene

  • Histone Cluster 1 H2A Pseudogene 5 2 3 5
  • H2A Histone Family, Member F, Pseudogene 2 3
  • Histone Cluster 1, H2a, Pseudogene 5 2 3
  • Histone 1, H2a, Pseudogene 5 2 3
  • PH2A/F 3
  • H2AFFP 3

External Ids for HIST1H2APS5 Gene

Previous HGNC Symbols for HIST1H2APS5 Gene

  • H2AFFP

Previous GeneCards Identifiers for HIST1H2APS5 Gene

  • GC06P026152
  • GC06P026045
  • GC06P026047
  • GC06P026050
  • GC06P026052
  • GC06P026056
  • GC06P026058
  • GC06P026061
  • GC06P026066
  • GC06P026072
  • GC06P026068
  • GC06P026073
  • GC06P026074
  • GC06P026075
  • GC06P026076
  • GC06P026077
  • GC06P026081

Summaries for HIST1H2APS5 Gene

Entrez Gene Summary for HIST1H2APS5 Gene

  • Histones are basic nuclear proteins responsible for nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This histone pseudogene is found in the large histone gene cluster on chromosome 6. [provided by RefSeq, Oct 2015]

GeneCards Summary for HIST1H2APS5 Gene

HIST1H2APS5 (Histone Cluster 1 H2A Pseudogene 5) is a Pseudogene.

Additional gene information for HIST1H2APS5 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HIST1H2APS5 Gene

Genomics for HIST1H2APS5 Gene

GeneHancer (GH) Regulatory Elements for HIST1H2APS5 Gene

Promoters and enhancers for HIST1H2APS5 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I026042 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 560.1 +0.9 930 4.7 HDGF PKNOX1 FOXA2 SMAD1 MLX ZFP64 ARID4B SIN3A DMAP1 IRF4 HIST1H2APS5 GC06P026043 GC06P026059 HIST1H2BB HIST1H3C ENSG00000272462 HMGN4 ABT1 BTN3A2 BTN2A1
GH06I026019 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.6 -16.3 -16314 16.2 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 HIST1H3A HIST1H3B HIST1H4B HIST1H2AB HIST1H4A ABT1 HMGN4 BTN2A1 BTN2A3P BTN2A2
GH06I026052 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 9.6 +11.4 11403 5.7 CLOCK MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 E2F8 ZNF143 SP3 GC06M026056 GC06M026057 GC06M026058 GC06M026059 GC06M026061 HIST1H1C ABT1 HMGN4 ENSG00000272462 BTN2A1
GH06I026102 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 9.9 +60.4 60350 3.6 MLX ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 GC06P026112 HIST1H4C PIR33351 PIR50904 ENSG00000272462 ABT1 HMGN4 BTN2A1 BTN2A3P BTN2A2
GH06I026015 Promoter/Enhancer 1.9 EPDnew FANTOM5 Ensembl ENCODE 10.2 -26.6 -26640 2.9 CTCF RXRA TAF1 CBFB MAX REST GABPA YY1 SP1 POLR2A HIST1H1A GC06P026018 GC06M026018 HIST1H1PS2 ENSG00000272462 HIST1H1C HIST1H2APS5 HIST1H4C BTN3A2 HMGN4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HIST1H2APS5 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HIST1H2APS5 Gene

Genomic Locations for HIST1H2APS5 Gene
651 bases
Plus strand

Genomic View for HIST1H2APS5 Gene

Genes around HIST1H2APS5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HIST1H2APS5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HIST1H2APS5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HIST1H2APS5 Gene

Proteins for HIST1H2APS5 Gene

Post-translational modifications for HIST1H2APS5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HIST1H2APS5 Gene

Domains & Families for HIST1H2APS5 Gene

Gene Families for HIST1H2APS5 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HIST1H2APS5: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HIST1H2APS5 Gene

Function for HIST1H2APS5 Gene

Phenotypes From GWAS Catalog for HIST1H2APS5 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HIST1H2APS5 Gene

Localization for HIST1H2APS5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HIST1H2APS5 Gene

Pathways & Interactions for HIST1H2APS5 Gene

SuperPathways for HIST1H2APS5 Gene

No Data Available

Interacting Proteins for HIST1H2APS5 Gene

Gene Ontology (GO) - Biological Process for HIST1H2APS5 Gene


No data available for Pathways by source and SIGNOR curated interactions for HIST1H2APS5 Gene

Drugs & Compounds for HIST1H2APS5 Gene

No Compound Related Data Available

Transcripts for HIST1H2APS5 Gene

mRNA/cDNA for HIST1H2APS5 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HIST1H2APS5 Gene

No ASD Table

Relevant External Links for HIST1H2APS5 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HIST1H2APS5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HIST1H2APS5 Gene

mRNA differential expression in normal tissues according to GTEx for HIST1H2APS5 Gene

This gene is overexpressed in Testis (x33.5).

NURSA nuclear receptor signaling pathways regulating expression of HIST1H2APS5 Gene:

genes like me logo Genes that share expression patterns with HIST1H2APS5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HIST1H2APS5 Gene

Orthologs for HIST1H2APS5 Gene

Evolution for HIST1H2APS5 Gene

Gene Tree for HIST1H2APS5 (if available)
Gene Tree for HIST1H2APS5 (if available)

No data available for Orthologs for HIST1H2APS5 Gene

Paralogs for HIST1H2APS5 Gene

No data available for Paralogs for HIST1H2APS5 Gene

Variants for HIST1H2APS5 Gene

Additional Variant Information for HIST1H2APS5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HIST1H2APS5 Gene

Disorders for HIST1H2APS5 Gene

No disorders were found for HIST1H2APS5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HIST1H2APS5 Gene

Publications for HIST1H2APS5 Gene

  1. Association of a human H1 histone gene with an H2A pseudogene and genes encoding H2B.1 and H3.1 histones. (PMID: 8227173) Kardalinou E … Doenecke D (Journal of cellular biochemistry 1993) 2 3 58

Products for HIST1H2APS5 Gene

Sources for HIST1H2APS5 Gene

Loading form....