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Aliases for HIST1H2APS5 Gene

Aliases for HIST1H2APS5 Gene

  • Histone Cluster 1 H2A Pseudogene 5 2 3 5
  • H2A Histone Family, Member F, Pseudogene 2 3
  • Histone Cluster 1, H2a, Pseudogene 5 2 3
  • Histone 1, H2a, Pseudogene 5 2 3
  • PH2A/F 3
  • H2AFFP 3

External Ids for HIST1H2APS5 Gene

Previous HGNC Symbols for HIST1H2APS5 Gene

  • H2AFFP

Previous GeneCards Identifiers for HIST1H2APS5 Gene

  • GC06P026152
  • GC06P026045
  • GC06P026047
  • GC06P026050
  • GC06P026052
  • GC06P026056
  • GC06P026058
  • GC06P026061
  • GC06P026066
  • GC06P026072
  • GC06P026068
  • GC06P026073
  • GC06P026074
  • GC06P026075
  • GC06P026076
  • GC06P026077

Summaries for HIST1H2APS5 Gene

Entrez Gene Summary for HIST1H2APS5 Gene

  • Histones are basic nuclear proteins responsible for nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This histone pseudogene is found in the large histone gene cluster on chromosome 6. [provided by RefSeq, Oct 2015]

GeneCards Summary for HIST1H2APS5 Gene

HIST1H2APS5 (Histone Cluster 1 H2A Pseudogene 5) is a Pseudogene.

Additional gene information for HIST1H2APS5 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HIST1H2APS5 Gene

Genomics for HIST1H2APS5 Gene

Regulatory Elements for HIST1H2APS5 Gene

Enhancers for HIST1H2APS5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H026019 1.9 FANTOM5 ENCODE dbSUPER 24.4 -16.3 -16314 16 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC MEF2D ABT1 BTN2A1 BTN2A3P HMGN4 ENSG00000272462 BTN2A2 BTN3A2 ZNF322 HIST1H2APS5 NUP50P2
GH06H026052 1.7 Ensembl ENCODE dbSUPER 22.4 +11.4 11403 5 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC ZC3H11A SSRP1 ABT1 ENSG00000272462 BTN2A1 HMGN4 BTN2A3P BTN2A2 HIST1H2APS5 NUP50P2 HIST1H2APS4 HIST1H2BPS1
GH06H026341 1.7 Ensembl ENCODE dbSUPER 14.6 +298.3 298291 1 HDGF PKNOX1 MLX ARNT ARID4B SIN3A YBX1 ZNF2 ZBTB7B ZNF766 ABT1 BTN2A3P ZNF322 BTN2A2 HMGN4 BTN3A2 BTN2A1 GUSBP2 TRIM38 HIST1H2APS4
GH06H026283 1.5 ENCODE dbSUPER 14.6 +241.2 241175 3 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC PPARGC1A ABT1 BTN2A3P HMGN4 BTN2A1 LOC102724851 BTN2A2 HIST1H2APS4 HIST1H2APS5 ENSG00000271071 HIST1H2BPS1
GH06H026154 1.4 ENCODE dbSUPER 14.7 +114.0 113966 5 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC MEF2D SSRP1 ZNF610 BTN2A2 BTN2A1 ABT1 HIST1H2APS4 HIST1H2APS5 ENSG00000271071 HIST1H2BPS1 HIST1H2BA LOC101928663 VN1R11P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HIST1H2APS5 on UCSC Golden Path with GeneCards custom track

Promoters for HIST1H2APS5 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000194974 400 2601 HDGF PKNOX1 FOXA2 MLX ZFP64 ARID4B NSD2 SIN3A DMAP1 YY1

Genomic Location for HIST1H2APS5 Gene

Chromosome:
6
Start:
26,043,900 bp from pter
End:
26,044,550 bp from pter
Size:
651 bases
Orientation:
Plus strand

Genomic View for HIST1H2APS5 Gene

Genes around HIST1H2APS5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HIST1H2APS5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HIST1H2APS5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HIST1H2APS5 Gene

Proteins for HIST1H2APS5 Gene

Post-translational modifications for HIST1H2APS5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HIST1H2APS5 Gene

Domains & Families for HIST1H2APS5 Gene

Gene Families for HIST1H2APS5 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HIST1H2APS5: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HIST1H2APS5 Gene

Function for HIST1H2APS5 Gene

Phenotypes From GWAS Catalog for HIST1H2APS5 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for HIST1H2APS5
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HIST1H2APS5 Gene

Localization for HIST1H2APS5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HIST1H2APS5 Gene

Pathways & Interactions for HIST1H2APS5 Gene

SuperPathways for HIST1H2APS5 Gene

No Data Available

Interacting Proteins for HIST1H2APS5 Gene

Gene Ontology (GO) - Biological Process for HIST1H2APS5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HIST1H2APS5 Gene

Drugs & Compounds for HIST1H2APS5 Gene

No Compound Related Data Available

Transcripts for HIST1H2APS5 Gene

mRNA/cDNA for HIST1H2APS5 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for HIST1H2APS5
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for HIST1H2APS5 Gene

No ASD Table

Relevant External Links for HIST1H2APS5 Gene

GeneLoc Exon Structure for
HIST1H2APS5
ECgene alternative splicing isoforms for
HIST1H2APS5

Expression for HIST1H2APS5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HIST1H2APS5 Gene

mRNA differential expression in normal tissues according to GTEx for HIST1H2APS5 Gene

This gene is overexpressed in Testis (x33.5).

NURSA nuclear receptor signaling pathways regulating expression of HIST1H2APS5 Gene:

HIST1H2APS5
genes like me logo Genes that share expression patterns with HIST1H2APS5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HIST1H2APS5 Gene

Orthologs for HIST1H2APS5 Gene

Evolution for HIST1H2APS5 Gene

ENSEMBL:
Gene Tree for HIST1H2APS5 (if available)
TreeFam:
Gene Tree for HIST1H2APS5 (if available)

No data available for Orthologs for HIST1H2APS5 Gene

Paralogs for HIST1H2APS5 Gene

No data available for Paralogs for HIST1H2APS5 Gene

Variants for HIST1H2APS5 Gene

Relevant External Links for HIST1H2APS5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HIST1H2APS5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HIST1H2APS5 Gene

Disorders for HIST1H2APS5 Gene

No disorders were found for HIST1H2APS5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HIST1H2APS5 Gene

Publications for HIST1H2APS5 Gene

  1. Association of a human H1 histone gene with an H2A pseudogene and genes encoding H2B.1 and H3.1 histones. (PMID: 8227173) Kardalinou E … Doenecke D (Journal of cellular biochemistry 1993) 2 3 60

Products for HIST1H2APS5 Gene

Sources for HIST1H2APS5 Gene

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