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Aliases for HIST1H2APS5 Gene

Aliases for HIST1H2APS5 Gene

  • Histone Cluster 1 H2A Pseudogene 5 2 3 5
  • H2A Histone Family, Member F, Pseudogene 2 3
  • Histone Cluster 1, H2a, Pseudogene 5 2 3
  • Histone 1, H2a, Pseudogene 5 2 3
  • PH2A/F 3
  • H2AFFP 3

External Ids for HIST1H2APS5 Gene

Previous HGNC Symbols for HIST1H2APS5 Gene

  • H2AFFP

Previous GeneCards Identifiers for HIST1H2APS5 Gene

  • GC06P026152
  • GC06P026045
  • GC06P026047
  • GC06P026050
  • GC06P026052
  • GC06P026056
  • GC06P026058
  • GC06P026061
  • GC06P026066
  • GC06P026072
  • GC06P026068
  • GC06P026073
  • GC06P026074
  • GC06P026075

Summaries for HIST1H2APS5 Gene

Entrez Gene Summary for HIST1H2APS5 Gene

  • Histones are basic nuclear proteins responsible for nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This histone pseudogene is found in the large histone gene cluster on chromosome 6. [provided by RefSeq, Oct 2015]

GeneCards Summary for HIST1H2APS5 Gene

HIST1H2APS5 (Histone Cluster 1 H2A Pseudogene 5) is a Pseudogene.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HIST1H2APS5 Gene

Genomics for HIST1H2APS5 Gene

Regulatory Elements for HIST1H2APS5 Gene

Enhancers for HIST1H2APS5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F026019 1.6 FANTOM5 ENCODE 25.9 -16.3 -16314 16.2 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 ABT1 HMGN4 ENSG00000272462 BTN3A2 ZNF322 HIST1H2APS5 HIST1H1C HIST1H2APS4 HIST1H2BPS1 HIST1H2BA
GH06F026120 1.6 FANTOM5 ENCODE 20.8 +80.1 80075 7.8 MLX CREB3L1 ZFP64 DMAP1 YY1 SLC30A9 SP3 NFYC TBX21 SSRP1 ABT1 ENSG00000272462 HMGN4 HIST1H2APS5 ZNF322 HIST1H2APS4 HIST1H2BA HIST1H2BPS1 ENSG00000271071 LOC101928663
GH06F026052 1.2 ENCODE 23.9 +11.4 11403 5.7 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC ENSG00000272462 ABT1 HMGN4 HIST1H2APS5 HIST1H2APS4 HIST1H2BPS1 HIST1H2BA ENSG00000271071 LOC101928663 ENSG00000223623
GH06F026341 1.4 Ensembl ENCODE 16.2 +298.3 298301 1.6 HDGF PKNOX1 ARNT MLX ARID4B SIN3A YBX1 ZNF2 ZNF766 CBX5 ZNF322 HMGN4 ABT1 BTN3A2 HIST1H2APS4 HIST1H2APS5 ENSG00000271071 HIST1H2BPS1 HIST1H2BA VN1R13P
GH06F026154 1.2 ENCODE 16.3 +114.0 113966 5.8 CREB3L1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC TBX21 HMGN4 ABT1 HIST1H2APS4 HIST1H2APS5 ENSG00000271071 HIST1H2BPS1 HIST1H2BA LOC101928663 VN1R13P VN1R11P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HIST1H2APS5 on UCSC Golden Path with GeneCards custom track

Promoters for HIST1H2APS5 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001213970 500 3601 HDGF PKNOX1 MLX WRNIP1 ZFP64 ARID4B SIN3A DMAP1 YY1 CBX5

Genomic Location for HIST1H2APS5 Gene

Chromosome:
6
Start:
26,043,900 bp from pter
End:
26,044,550 bp from pter
Size:
651 bases
Orientation:
Plus strand

Genomic View for HIST1H2APS5 Gene

Genes around HIST1H2APS5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HIST1H2APS5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HIST1H2APS5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HIST1H2APS5 Gene

Proteins for HIST1H2APS5 Gene

Post-translational modifications for HIST1H2APS5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HIST1H2APS5 Gene

Domains & Families for HIST1H2APS5 Gene

Gene Families for HIST1H2APS5 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HIST1H2APS5: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HIST1H2APS5 Gene

Function for HIST1H2APS5 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HIST1H2APS5 Gene

Localization for HIST1H2APS5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HIST1H2APS5 Gene

Pathways & Interactions for HIST1H2APS5 Gene

SuperPathways for HIST1H2APS5 Gene

No Data Available

Interacting Proteins for HIST1H2APS5 Gene

Gene Ontology (GO) - Biological Process for HIST1H2APS5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HIST1H2APS5 Gene

Transcripts for HIST1H2APS5 Gene

mRNA/cDNA for HIST1H2APS5 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HIST1H2APS5 Gene

No ASD Table

Relevant External Links for HIST1H2APS5 Gene

GeneLoc Exon Structure for
HIST1H2APS5
ECgene alternative splicing isoforms for
HIST1H2APS5

Expression for HIST1H2APS5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HIST1H2APS5 Gene

mRNA differential expression in normal tissues according to GTEx for HIST1H2APS5 Gene

This gene is overexpressed in Testis (x33.5).

NURSA nuclear receptor signaling pathways regulating expression of HIST1H2APS5 Gene:

HIST1H2APS5
genes like me logo Genes that share expression patterns with HIST1H2APS5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HIST1H2APS5 Gene

Orthologs for HIST1H2APS5 Gene

Evolution for HIST1H2APS5 Gene

ENSEMBL:
Gene Tree for HIST1H2APS5 (if available)
TreeFam:
Gene Tree for HIST1H2APS5 (if available)

No data available for Orthologs for HIST1H2APS5 Gene

Paralogs for HIST1H2APS5 Gene

No data available for Paralogs for HIST1H2APS5 Gene

Variants for HIST1H2APS5 Gene

Relevant External Links for HIST1H2APS5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HIST1H2APS5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HIST1H2APS5 Gene

Disorders for HIST1H2APS5 Gene

No disorders were found for HIST1H2APS5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HIST1H2APS5 Gene

Publications for HIST1H2APS5 Gene

  1. Association of a human H1 histone gene with an H2A pseudogene and genes encoding H2B.1 and H3.1 histones. (PMID: 8227173) Kardalinou E. … Doenecke D. (J. Cell. Biochem. 1993) 2 3 64

Products for HIST1H2APS5 Gene

Sources for HIST1H2APS5 Gene

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