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Aliases for HIST1H2APS3 Gene

Aliases for HIST1H2APS3 Gene

  • Histone Cluster 1 H2A Pseudogene 3 2 3 5
  • Histone Cluster 1, H2a, Pseudogene 3 2 3
  • Histone 1, H2a, Pseudogene 3 2 3
  • DJ34B20.8 3
  • H2AFUP 3

External Ids for HIST1H2APS3 Gene

Previous GeneCards Identifiers for HIST1H2APS3 Gene

  • GC00U914063
  • GC06U900690
  • GC06P026341
  • GC06P026234
  • GC06P026236
  • GC06P026237
  • GC06P026238
  • GC06P026239
  • GC06P026243
  • GC06P026252
  • GC06P026271
  • GC06P026317
  • GC06P026278
  • GC06P026362
  • GC06P026391
  • GC06P026435
  • GC06P026493

Summaries for HIST1H2APS3 Gene

Entrez Gene Summary for HIST1H2APS3 Gene

  • Histones are basic nuclear proteins responsible for nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This histone pseudogene is found in the large histone gene cluster on chromosome 6. [provided by RefSeq, Oct 2015]

GeneCards Summary for HIST1H2APS3 Gene

HIST1H2APS3 (Histone Cluster 1 H2A Pseudogene 3) is a Pseudogene.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HIST1H2APS3 Gene

Genomics for HIST1H2APS3 Gene

Regulatory Elements for HIST1H2APS3 Gene

Enhancers for HIST1H2APS3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G026248 1.6 Ensembl ENCODE dbSUPER 11.8 +22.2 22248 12.9 HDGF PKNOX1 FOXA2 ARNT CREB3L1 MLX WRNIP1 ARID4B SIN3A YY1 ABT1 HIST1H3E HMGN4 HIST1H2APS3 HIST1H4H HIST1H2BE LARP1P1 HIST1H4C HIST1H2AE ENSG00000272462
GH06G026309 1.7 Ensembl ENCODE dbSUPER 10.7 +78.7 78719 4.9 CREB3L1 MLX DMAP1 FEZF1 YBX1 YY1 ZNF143 NFYC TBX21 MEF2D BTN3A2 HIST1H4H ABT1 HIST1H3E GUSBP2 ZNF322 HIST1H2APS4 HIST1H3G TRIM38 HIST1H2APS3
GH06G026193 1.5 ENCODE dbSUPER 11.8 -32.3 -32331 14.6 CREB3L1 MLX AGO1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC ABT1 BTN3A2 HIST1H3E HMGN4 HIST1H2AE HIST1H2BE LARP1P1 HIST1H2APS3 HIST1H1E HIST1H2BD
GH06G026303 1.6 Ensembl ENCODE dbSUPER 10.9 +71.6 71625 2.8 HDGF PKNOX1 CREB3L1 MLX ARNT ARID4B SIN3A ZNF766 ZNF143 FOS ABT1 HIST1H3E HIST1H2APS4 HIST1H3G TRIM38 HIST1H2APS3 HIST1H4G HIST1H2BE LARP1P1 BTN1A1
GH06G026294 1.6 Ensembl ENCODE dbSUPER 9.9 +63.3 63303 3.2 HDGF HNRNPUL1 FOXA2 PKNOX1 CREB3L1 MLX ARNT ARID4B SIN3A DMAP1 HMGN4 HIST1H3E HIST1H2APS4 HIST1H3G HIST1H2BH HIST1H2BD HIST1H1E HIST1H2BE HIST1H4G LARP1P1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HIST1H2APS3 on UCSC Golden Path with GeneCards custom track

Promoters for HIST1H2APS3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000319961 -222 201 PKNOX1 PTBP1 FUS TAL1 AGO1 CHD7 GATA3 POLR2A ADNP ZNF207
ENSR00000195004 1278 2401 HDGF PKNOX1 CREB3L1 ARNT AGO1 WRNIP1 SIN3A ZNF2 YY1 ZNF766

Genomic Location for HIST1H2APS3 Gene

Chromosome:
6
Start:
26,233,122 bp from pter
End:
26,233,255 bp from pter
Size:
134 bases
Orientation:
Plus strand

Genomic View for HIST1H2APS3 Gene

Genes around HIST1H2APS3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HIST1H2APS3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HIST1H2APS3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HIST1H2APS3 Gene

Proteins for HIST1H2APS3 Gene

Post-translational modifications for HIST1H2APS3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HIST1H2APS3 Gene

Domains & Families for HIST1H2APS3 Gene

Gene Families for HIST1H2APS3 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HIST1H2APS3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HIST1H2APS3 Gene

Function for HIST1H2APS3 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HIST1H2APS3 Gene

Localization for HIST1H2APS3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HIST1H2APS3 Gene

Pathways & Interactions for HIST1H2APS3 Gene

SuperPathways for HIST1H2APS3 Gene

No Data Available

Interacting Proteins for HIST1H2APS3 Gene

Gene Ontology (GO) - Biological Process for HIST1H2APS3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HIST1H2APS3 Gene

Drugs & Compounds for HIST1H2APS3 Gene

No Compound Related Data Available

Transcripts for HIST1H2APS3 Gene

mRNA/cDNA for HIST1H2APS3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HIST1H2APS3 Gene

No ASD Table

Relevant External Links for HIST1H2APS3 Gene

GeneLoc Exon Structure for
HIST1H2APS3
ECgene alternative splicing isoforms for
HIST1H2APS3

Expression for HIST1H2APS3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HIST1H2APS3 Gene

mRNA differential expression in normal tissues according to GTEx for HIST1H2APS3 Gene

This gene is overexpressed in Vagina (x7.3), Prostate (x5.3), Skin - Not Sun Exposed (Suprapubic) (x4.6), Cervix - Ectocervix (x4.4), and Whole Blood (x4.4).

NURSA nuclear receptor signaling pathways regulating expression of HIST1H2APS3 Gene:

HIST1H2APS3
genes like me logo Genes that share expression patterns with HIST1H2APS3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HIST1H2APS3 Gene

Orthologs for HIST1H2APS3 Gene

Evolution for HIST1H2APS3 Gene

ENSEMBL:
Gene Tree for HIST1H2APS3 (if available)
TreeFam:
Gene Tree for HIST1H2APS3 (if available)

No data available for Orthologs for HIST1H2APS3 Gene

Paralogs for HIST1H2APS3 Gene

No data available for Paralogs for HIST1H2APS3 Gene

Variants for HIST1H2APS3 Gene

Relevant External Links for HIST1H2APS3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HIST1H2APS3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HIST1H2APS3 Gene

Disorders for HIST1H2APS3 Gene

No disorders were found for HIST1H2APS3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HIST1H2APS3 Gene

Publications for HIST1H2APS3 Gene

  1. Meta-analysis of genome-wide scans for human adult stature identifies novel Loci and associations with measures of skeletal frame size. (PMID: 19343178) Soranzo N. … Deloukas P. (PLoS Genet. 2009) 3 64
  2. Identification of ten loci associated with height highlights new biological pathways in human growth. (PMID: 18391950) Lettre G. … Hirschhorn J.N. (Nat. Genet. 2008) 3 64
  3. Many sequence variants affecting diversity of adult human height. (PMID: 18391951) Gudbjartsson D.F. … Stefansson K. (Nat. Genet. 2008) 3 64

Products for HIST1H2APS3 Gene

Sources for HIST1H2APS3 Gene

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