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Aliases for HIST1H2APS1 Gene

Aliases for HIST1H2APS1 Gene

  • Histone Cluster 1, H2a, Pseudogene 1 2 3
  • Histone 1, H2a, Pseudogene 1 2 3
  • BA317E16.5 3
  • H2AFSP 3

External Ids for HIST1H2APS1 Gene

Previous GeneCards Identifiers for HIST1H2APS1 Gene

  • GC00U914059
  • GC06U900686
  • GC06P025840
  • GC06P025733
  • GC06P025735
  • GC06P025739
  • GC06P025747
  • GC06P025753
  • GC06P025759
  • GC06P025764

Summaries for HIST1H2APS1 Gene

Entrez Gene Summary for HIST1H2APS1 Gene

  • Histones are basic nuclear proteins responsible for nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This gene is a histone pseudogene found on chromosome 6. [provided by RefSeq, Oct 2015]

GeneCards Summary for HIST1H2APS1 Gene

HIST1H2APS1 (Histone Cluster 1, H2a, Pseudogene 1) is a Pseudogene.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HIST1H2APS1 Gene

Genomics for HIST1H2APS1 Gene

Genomic Location for HIST1H2APS1 Gene

Chromosome:
6
Start:
25,732,433 bp from pter
End:
25,732,861 bp from pter
Size:
429 bases
Orientation:
Plus strand

Genomic View for HIST1H2APS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
GeneLoc Logo Gene Density

RefSeq DNA sequence for HIST1H2APS1 Gene

No data available for Regulatory Elements for HIST1H2APS1 Gene

Proteins for HIST1H2APS1 Gene

Post-translational modifications for HIST1H2APS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HIST1H2APS1 Gene

Domains & Families for HIST1H2APS1 Gene

Gene Families for HIST1H2APS1 Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HIST1H2APS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HIST1H2APS1 Gene

Function for HIST1H2APS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HIST1H2APS1 Gene

Localization for HIST1H2APS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HIST1H2APS1 Gene

Pathways & Interactions for HIST1H2APS1 Gene

SuperPathways for HIST1H2APS1 Gene

No Data Available

Interacting Proteins for HIST1H2APS1 Gene

Gene Ontology (GO) - Biological Process for HIST1H2APS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HIST1H2APS1 Gene

Drugs & Compounds for HIST1H2APS1 Gene

No Compound Related Data Available

Transcripts for HIST1H2APS1 Gene

mRNA/cDNA for HIST1H2APS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HIST1H2APS1 Gene

Histone cluster 1, H2a, pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HIST1H2APS1 Gene

No ASD Table

Relevant External Links for HIST1H2APS1 Gene

GeneLoc Exon Structure for
HIST1H2APS1
ECgene alternative splicing isoforms for
HIST1H2APS1

Expression for HIST1H2APS1 Gene

mRNA expression in normal human tissues for HIST1H2APS1 Gene

mRNA differential expression in normal tissues according to GTEx for HIST1H2APS1 Gene

This gene is overexpressed in Testis (x51.7).

SOURCE GeneReport for Unigene cluster for HIST1H2APS1 Gene Hs.741681

genes like me logo Genes that share expression patterns with HIST1H2APS1: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for HIST1H2APS1 Gene

Orthologs for HIST1H2APS1 Gene

Evolution for HIST1H2APS1 Gene

ENSEMBL:
Gene Tree for HIST1H2APS1 (if available)
TreeFam:
Gene Tree for HIST1H2APS1 (if available)

No data available for Orthologs for HIST1H2APS1 Gene

Paralogs for HIST1H2APS1 Gene

No data available for Paralogs for HIST1H2APS1 Gene

Variants for HIST1H2APS1 Gene

Sequence variations from dbSNP and Humsavar for HIST1H2APS1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs4464787 -- 25,733,330(+) AGAAG(C/G)AAAGG downstream-variant-500B
rs4711097 -- 25,732,086(+) TTGTC(C/T)TCCTT upstream-variant-2KB
rs4712962 -- 25,732,103(+) TTAGC(A/G)ACTGC upstream-variant-2KB
rs6928040 -- 25,731,463(+) ACGTC(A/G)TAGAC upstream-variant-2KB
rs9358873 -- 25,731,555(+) TGCCT(C/T)GGCTG upstream-variant-2KB

Relevant External Links for HIST1H2APS1 Gene

HapMap Linkage Disequilibrium report
HIST1H2APS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HIST1H2APS1 Gene

Disorders for HIST1H2APS1 Gene

Relevant External Links for HIST1H2APS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HIST1H2APS1
genes like me logo Genes that share disorders with HIST1H2APS1: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HIST1H2APS1 Gene

Publications for HIST1H2APS1 Gene

No publications were found for HIST1H2APS1 Gene.

Products for HIST1H2APS1 Gene

Sources for HIST1H2APS1 Gene

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