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HIST1H2APS1 Gene(Pseudogene)

Histone Cluster 1 H2A Pseudogene 1

GCID:
GC06P025792
GIFtS:
16
Genes Participants
UDN Logo

Aliases for HIST1H2APS1 Gene

Aliases for HIST1H2APS1 Gene

  • Histone Cluster 1 H2A Pseudogene 1 2 3 5
  • Histone Cluster 1, H2a, Pseudogene 1 2 3
  • Histone 1, H2a, Pseudogene 1 2 3
  • BA317E16.5 3
  • H2AFSP 3

External Ids for HIST1H2APS1 Gene

Previous GeneCards Identifiers for HIST1H2APS1 Gene

  • GC00U914059
  • GC06U900686
  • GC06P025840
  • GC06P025733
  • GC06P025735
  • GC06P025739
  • GC06P025747
  • GC06P025753
  • GC06P025759
  • GC06P025764
  • GC06P025769
  • GC06P025774
  • GC06P025779
  • GC06P025786

Summaries for HIST1H2APS1 Gene

Entrez Gene Summary for HIST1H2APS1 Gene

  • Histones are basic nuclear proteins responsible for nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This gene is a histone pseudogene found on chromosome 6. [provided by RefSeq, Oct 2015]

GeneCards Summary for HIST1H2APS1 Gene

HIST1H2APS1 (Histone Cluster 1 H2A Pseudogene 1) is a Pseudogene.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HIST1H2APS1 Gene

Genomics for HIST1H2APS1 Gene

Products:

  1. Regulatory Element

Regulatory Elements for HIST1H2APS1 Gene

Enhancers for HIST1H2APS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G025748 0.8 ENCODE 0.4 +17.6 17554 3.7 ELF3 SOX13 DRAP1 SAP130 MLX ZFP64 DMAP1 CEBPG THRB ZSCAN9 ENSG00000272462 SLC17A3 BTN3A2 ENSG00000272810 SLC17A4 HMGN4 HCG11 HIST1H2APS1
GH06G025742 0.4 ENCODE 0.4 +11.4 11355 1.6 SPI1 ENSG00000272462 BTN3A2 SLC17A4 HIST1H2APS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HIST1H2APS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for HIST1H2APS1 Gene

Chromosome:
6
Start:
25,732,433 bp from pter
End:
25,732,861 bp from pter
Size:
429 bases
Orientation:
Plus strand

Genomic View for HIST1H2APS1 Gene

Genes around HIST1H2APS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HIST1H2APS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HIST1H2APS1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for HIST1H2APS1 Gene

Proteins for HIST1H2APS1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for HIST1H2APS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HIST1H2APS1 Gene

Domains & Families for HIST1H2APS1 Gene

Gene Families for HIST1H2APS1 Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HIST1H2APS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HIST1H2APS1 Gene

Function for HIST1H2APS1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HIST1H2APS1 Gene

Localization for HIST1H2APS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HIST1H2APS1 Gene

Pathways & Interactions for HIST1H2APS1 Gene

SuperPathways for HIST1H2APS1 Gene

PathCards logo More details on SuperPathways for HIST1H2APS1
No Data Available

Interacting Proteins for HIST1H2APS1 Gene

Gene Ontology (GO) - Biological Process for HIST1H2APS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HIST1H2APS1 Gene

Drugs & Compounds for HIST1H2APS1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for HIST1H2APS1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for HIST1H2APS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HIST1H2APS1 Gene

Histone cluster 1, H2a, pseudogene 1:
Representative Sequences:

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HIST1H2APS1 Gene

No ASD Table

Relevant External Links for HIST1H2APS1 Gene

GeneLoc Exon Structure for
HIST1H2APS1
ECgene alternative splicing isoforms for
HIST1H2APS1

Expression for HIST1H2APS1 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HIST1H2APS1 Gene

mRNA expression in normal human tissues for HIST1H2APS1 Gene
mRNA expression by GTEx for HIST1H2APS1 Gene

mRNA differential expression in normal tissues according to GTEx for HIST1H2APS1 Gene

This gene is overexpressed in Testis (x51.7).

NURSA nuclear receptor signaling pathways regulating expression of HIST1H2APS1 Gene:

HIST1H2APS1

SOURCE GeneReport for Unigene cluster for HIST1H2APS1 Gene:

Hs.741681
genes like me logo Genes that share expression patterns with HIST1H2APS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HIST1H2APS1 Gene

Orthologs for HIST1H2APS1 Gene

Evolution for HIST1H2APS1 Gene

ENSEMBL:
Gene Tree for HIST1H2APS1 (if available)
TreeFam:
Gene Tree for HIST1H2APS1 (if available)

No data available for Orthologs for HIST1H2APS1 Gene

Paralogs for HIST1H2APS1 Gene

No data available for Paralogs for HIST1H2APS1 Gene

Variants for HIST1H2APS1 Gene

Sequence variations from dbSNP and Humsavar for HIST1H2APS1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000172368 -- 25,732,902(+) AAAAC(A/C)AAAAC intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1000322026 -- 25,732,093(+) CCTTC(A/G)AGTTT intron-variant, upstream-variant-2KB
rs1000929096 -- 25,730,711(+) ATTTC(A/G)AAACA intron-variant, upstream-variant-2KB
rs1003025965 -- 25,730,992(+) TTCTG(G/T)CTTGG intron-variant, upstream-variant-2KB
rs1004886646 -- 25,733,281(+) ATTTT(-/G)GGGGT intron-variant, downstream-variant-500B, upstream-variant-2KB

Relevant External Links for HIST1H2APS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HIST1H2APS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HIST1H2APS1 Gene

Disorders for HIST1H2APS1 Gene

Relevant External Links for HIST1H2APS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HIST1H2APS1

No disorders were found for HIST1H2APS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HIST1H2APS1 Gene

Publications for HIST1H2APS1 Gene

No publications were found for HIST1H2APS1 Gene.

Products for HIST1H2APS1 Gene

Sources for HIST1H2APS1 Gene

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