Aliases for HIST1H2AE Gene
Aliases for HIST1H2AE Gene
External Ids for HIST1H2AE Gene
- HGNC: 4724
- Entrez Gene: 3012
- Ensembl: ENSG00000277075
- OMIM: 602786
- UniProtKB: P04908
Previous HGNC Symbols for HIST1H2AE Gene
- H2AFA
Previous GeneCards Identifiers for HIST1H2AE Gene
- GC06P026275
- GC06P026325
- GC06P026218
- GC06P026160
- GC06P026220
- GC06P026221
- GC06P026222
- GC06P026228
- GC06P026249
- GC06P026255
- GC06P026295
- GC06P026265
- GC06P026358
- GC06P026390
- GC06P026433
- GC06P026492
Summaries for HIST1H2AE Gene
-
Histones are basic nuclear proteins that are responsible for the nucleosome structure of the chromosomal fiber in eukaryotes. Nucleosomes consist of approximately 146 bp of DNA wrapped around a histone octamer composed of pairs of each of the four core histones (H2A, H2B, H3, and H4). The chromatin fiber is further compacted through the interaction of a linker histone, H1, with the DNA between the nucleosomes to form higher order chromatin structures. This gene is intronless and encodes a replication-dependent histone that is a member of the histone H2A family. Transcripts from this gene lack polyA tails; instead, they contain a palindromic termination element. This gene is found in the large histone gene cluster on chromosome 6p22-p21.3. [provided by RefSeq, Aug 2015]
GeneCards Summary for HIST1H2AE Gene
HIST1H2AE (Histone Cluster 1 H2A Family Member E) is a Protein Coding gene. Diseases associated with HIST1H2AE include Riddle Syndrome. Among its related pathways are Activated PKN1 stimulates transcription of AR (androgen receptor) regulated genes KLK2 and KLK3 and Meiosis. GO annotations related to this gene include sequence-specific DNA binding and protein heterodimerization activity. An important paralog of this gene is HIST1H2AB.
UniProtKB/Swiss-Prot for HIST1H2AE Gene
-
Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HIST1H2AE Gene
Genomics for HIST1H2AE Gene
Regulatory Elements for HIST1H2AE Gene
Regulatory Element Products
Genomic Location for HIST1H2AE Gene
- Chromosome:
- 6
- Start:
- 26,216,920 bp from pter
- End:
- 26,217,483 bp from pter
- Size:
- 564 bases
- Orientation:
- Plus strand
Genomic View for HIST1H2AE Gene
- Cytogenetic band:
-
- 6p22.2 by Ensembl
- 6p22.2 by Entrez Gene
- 6p22.2 by HGNC
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for HIST1H2AE Gene
Proteins for HIST1H2AE Gene
-
Protein details for HIST1H2AE Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- P04908-H2A1B_HUMAN
- Recommended name:
- Histone H2A type 1-B/E
- Protein Accession:
- P04908
- P28001
- Q76P63
Protein attributes for HIST1H2AE Gene
- Size:
- 130 amino acids
- Molecular mass:
- 14135 Da
- Quaternary structure:
-
- The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA.
- The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA.
Protein Expression for HIST1H2AE Gene
Post-translational modifications for HIST1H2AE Gene
- Crotonylation (Kcr) is specifically present in male germ cells and marks testis-specific genes in post-meiotic cells, including X-linked genes that escape sex chromosome inactivation in haploid cells. Crotonylation marks active promoters and enhancers and confers resistance to transcriptional repressors. It is also associated with post-meiotically activated genes on autosomes.
- Deiminated on Arg-4 in granulocytes upon calcium entry.
- Glutamine methylation at Gln-105 (H2AQ104me) by FBL is specifically dedicated to polymerase I. It is present at 35S ribosomal DNA locus and impairs binding of the FACT complex (PubMed:24352239).
- Monoubiquitination of Lys-120 (H2AK119Ub) by RING1, TRIM27 and RNF2/RING2 complex gives a specific tag for epigenetic transcriptional repression and participates in X chromosome inactivation of female mammals. It is involved in the initiation of both imprinted and random X inactivation. Ubiquitinated H2A is enriched in inactive X chromosome chromatin. Ubiquitination of H2A functions downstream of methylation of Lys-27 of histone H3 (H3K27me). H2AK119Ub by RNF2/RING2 can also be induced by ultraviolet and may be involved in DNA repair. Monoubiquitination of Lys-120 (H2AK119Ub) by TRIM27 may promote transformation of cells in a number of breast cancers (PubMed:25470042). Following DNA double-strand breaks (DSBs), it is ubiquitinated through Lys-63 linkage of ubiquitin moieties by the E2 ligase UBE2N and the E3 ligases RNF8 and RNF168, leading to the recruitment of repair proteins to sites of DNA damage. Ubiquitination at Lys-14 and Lys-16 (H2AK13Ub and H2AK15Ub, respectively) in response to DNA damage is initiated by RNF168 that mediates monoubiquitination at these 2 sites, and Lys-63-linked ubiquitin are then conjugated to monoubiquitin; RNF8 is able to extend Lys-63-linked ubiquitin chains in vitro. H2AK119Ub and ionizing radiation-induced Lys-63-linked ubiquitination (H2AK13Ub and H2AK15Ub) are distinct events.
- Phosphorylation on Ser-2 (H2AS1ph) is enhanced during mitosis. Phosphorylation on Ser-2 by RPS6KA5/MSK1 directly represses transcription. Acetylation of H3 inhibits Ser-2 phosphorylation by RPS6KA5/MSK1. Phosphorylation at Thr-121 (H2AT120ph) by VPRBP is present in the regulatory region of many tumor suppresor genes and down-regulates their transcription.
- Symmetric dimethylation on Arg-4 by the PRDM1/PRMT5 complex may play a crucial role in the germ-cell lineage.
- Ubiquitination at isoforms=14 and posLast=1616
- Modification sites at PhosphoSitePlus
Other Protein References for HIST1H2AE Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
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Abcam antibodies for HIST1H2AE
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- GeneTex HIST1H2AE antibody for HIST1H2AE
Protein Products
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OriGene Purified Proteins for HIST1H2AE
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Assay Products
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Cloud-Clone Corp Assay Kits for HIST1H2AE
No data available for DME Specific Peptides for HIST1H2AE Gene
Domains & Families for HIST1H2AE Gene
Gene Families for HIST1H2AE Gene
- HGNC:
Protein Domains for HIST1H2AE Gene
- InterPro:
- Blocks:
- ProtoNet:
Suggested Antigen Peptide Sequences for HIST1H2AE Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
P04908- Family:
-
- Belongs to the histone H2A family.
Function for HIST1H2AE Gene
Molecular function for HIST1H2AE Gene
- UniProtKB/Swiss-Prot Function:
- Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0003677 | DNA binding | NAS | 6647026 |
| GO:0046982 | protein heterodimerization activity | IEA | -- |
Phenotypes for HIST1H2AE Gene
Animal Model Products
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CRISPR Products
-
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-
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miRNA for HIST1H2AE Gene
- miRTarBase miRNAs that target HIST1H2AE
-
- hsa-mir-34a-5p (MIRT025246)
- hsa-mir-365a-5p (MIRT035762)
- hsa-mir-940 (MIRT036613)
- hsa-mir-221-3p (MIRT046887)
- hsa-mir-92a-3p (MIRT049668)
- hsa-mir-5693 (MIRT511772)
- hsa-mir-659-3p (MIRT511773)
- hsa-mir-29b-2-5p (MIRT511774)
- hsa-mir-8057 (MIRT511775)
- hsa-mir-4314 (MIRT511776)
- hsa-mir-6822-3p (MIRT511777)
- hsa-mir-4766-5p (MIRT511778)
- hsa-mir-146a-3p (MIRT511779)
- hsa-mir-1276 (MIRT511780)
- hsa-mir-760 (MIRT511781)
- hsa-mir-9-5p (MIRT511782)
- hsa-mir-3661 (MIRT523255)
- hsa-mir-6748-5p (MIRT523256)
- hsa-mir-6769b-5p (MIRT523257)
- hsa-mir-6769a-5p (MIRT523258)
- hsa-mir-4483 (MIRT523259)
- hsa-mir-1293 (MIRT523260)
- hsa-mir-6766-5p (MIRT523261)
- hsa-mir-6756-5p (MIRT523262)
- hsa-mir-6745 (MIRT523263)
- hsa-mir-363-5p (MIRT523264)
- hsa-mir-6506-5p (MIRT523265)
- hsa-mir-619-5p (MIRT523266)
- hsa-mir-3192-5p (MIRT523267)
- hsa-mir-4646-5p (MIRT523268)
- hsa-mir-204-3p (MIRT523269)
miRNA Products
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Inhibitory RNA Products
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Cell Line Products
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Flow Cytometry Products
No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for HIST1H2AE Gene
Localization for HIST1H2AE Gene
Subcellular locations from UniProtKB/Swiss-Prot for HIST1H2AE Gene
- Nucleus. Chromosome.
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000786 | nucleosome | IEA | -- |
| GO:0000790 | nuclear chromatin | IBA | -- |
| GO:0005634 | nucleus | IDA | 16319397 |
| GO:0005694 | chromosome | IEA | -- |
| GO:0070062 | extracellular exosome | IDA | 19199708 |
Pathways & Interactions for HIST1H2AE Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | Activated PKN1 stimulates transcription of AR (androgen receptor) regulated genes KLK2 and KLK3 |
.88
|
.34
|
| 2 | Cellular Senescence | ||
| 3 | Chromosome Maintenance | ||
| 4 | Cell Cycle, Mitotic |
.83
|
.60
|
| 5 | Chromatin organization | ||
Pathways by source for HIST1H2AE Gene
58 Reactome pathways for HIST1H2AE Gene
- Activated PKN1 stimulates transcription of AR (androgen receptor) regulated genes KLK2 and KLK3
- Activation of anterior HOX genes in hindbrain development during early embryogenesis
- Activation of HOX genes during differentiation
- Amyloid fiber formation
- B-WICH complex positively regulates rRNA expression
2 KEGG pathways for HIST1H2AE Gene
Interacting Proteins for HIST1H2AE Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0006342 | chromatin silencing | IBA | -- |
| GO:0008285 | negative regulation of cell proliferation | IMP | 23956221 |
No data available for SIGNOR curated interactions for HIST1H2AE Gene
Transcripts for HIST1H2AE Gene
mRNA/cDNA for HIST1H2AE Gene
- (1) REFSEQ mRNAs :
- (2) Additional mRNA sequences :
- (19) Selected AceView cDNA sequences:
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for HIST1H2AE Gene
CRISPR Products
-
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-
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Inhibitory RNA Products
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Expression for HIST1H2AE Gene
mRNA differential expression in normal tissues according to GTEx for HIST1H2AE Gene
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for HIST1H2AE Gene
NURSA nuclear receptor signaling pathways regulating expression of HIST1H2AE Gene:
HIST1H2AESOURCE GeneReport for Unigene cluster for HIST1H2AE Gene:
Hs.121017Evidence on tissue expression from TISSUES for HIST1H2AE Gene
- Liver(4.3)
Primer Products
-
OriGene qPCR primer pairs for HIST1H2AE
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for HIST1H2AE Gene
Orthologs for HIST1H2AE Gene
This gene was present in the common ancestor of eukaryotes.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| mouse (Mus musculus) |
Mammalia | Hist1h2ai 34 16 |
|
||
| dog (Canis familiaris) |
Mammalia | HIST3H2A 34 |
|
||
| rat (Rattus norvegicus) |
Mammalia | Hist1h2ac 34 |
|
||
| chimpanzee (Pan troglodytes) |
Mammalia | LOC748495 34 |
|
||
| cow (Bos Taurus) |
Mammalia | HIST3H2A 34 |
|
||
| Alicante grape (Vitis vinifera) |
eudicotyledons | Vvi.9451 34 |
|
- Species where no ortholog for HIST1H2AE was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- lizard (Anolis carolinensis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- oppossum (Monodelphis domestica)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- platypus (Ornithorhynchus anatinus)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
- zebrafish (Danio rerio)
Paralogs for HIST1H2AE Gene
Paralogs for HIST1H2AE Gene
(26) SIMAP similar genes for HIST1H2AE Gene using alignment to 1 proteins:
Pseudogenes.org Pseudogenes for HIST1H2AE Gene
Variants for HIST1H2AE Gene
| SNP ID | Clin | Chr 06 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1001787573 | -- | 26,215,383(+) | GTGTT(A/T)GCCAG | upstream-variant-2KB | |
| rs1002538521 | -- | 26,216,563(+) | TTCTT(A/G)CCATC | upstream-variant-2KB, reference, synonymous-codon | |
| rs1002793227 | -- | 26,217,725(+) | GTTTA(C/T)TCATG | downstream-variant-500B, upstream-variant-2KB | |
| rs1002799030 | -- | 26,216,322(+) | CTTGG(A/C)CAGCT | upstream-variant-2KB, reference, missense | |
| rs1006759405 | -- | 26,217,577(+) | TTTAT(C/T)TTACT | downstream-variant-500B, upstream-variant-2KB |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv5926n100 | CNV | gain | 25217958 |
| nsv1021294 | CNV | loss | 25217958 |
| nsv1023453 | CNV | gain | 25217958 |
| nsv428137 | CNV | loss | 18775914 |
Relevant External Links for HIST1H2AE Gene
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for HIST1H2AE Gene
Disorders for HIST1H2AE Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| riddle syndrome |
|
|
Relevant External Links for HIST1H2AE
- Atlas of Genetics and Cytogenetics in Oncology and Haematology:
- HIST1H2AE
No data available for UniProtKB/Swiss-Prot and Genatlas for HIST1H2AE Gene
Publications for HIST1H2AE Gene
- The human and mouse replication-dependent histone genes. (PMID: 12408966) Marzluff W.F. … Maltais L.J. (Genomics 2002) 2 3 4 64
- Isolation and characterization of two human H1 histone genes within clusters of core histone genes. (PMID: 1916825) Albig W. … Doenecke D. (Genomics 1991) 2 3 4 64
- Precise characterization of human histones in the H2A gene family by top down mass spectrometry. (PMID: 16457589) Boyne M.T. II … Kelleher N.L. (J. Proteome Res. 2006) 3 4 64
- DNA damage triggers nucleotide excision repair-dependent monoubiquitylation of histone H2A. (PMID: 16702407) Bergink S. … Dantuma N.P. (Genes Dev. 2006) 3 4 64
- Deimination of histone H2A and H4 at arginine 3 in HL-60 granulocytes. (PMID: 15823041) Hagiwara T. … Yamada M. (Biochemistry 2005) 3 4 64
Products for HIST1H2AE Gene
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- Mammalian expression: PiggyBac
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- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for HIST1H2AE Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
- (126) GTR
- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer




