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Aliases for HIST1H2AC Gene

Aliases for HIST1H2AC Gene

  • Histone Cluster 1, H2ac 2 3
  • H2AFL 3 4 6
  • H2A Histone Family, Member L 2 3
  • Histone 1, H2ac 2 3
  • Histone H2A/L 3 4
  • Histone H2A Type 1-C 3
  • Histone H2AC 3
  • DJ221C16.4 3
  • H2A/L 3

External Ids for HIST1H2AC Gene

Previous Symbols for HIST1H2AC Gene

  • H2AFL

Summaries for HIST1H2AC Gene

Entrez Gene Summary for HIST1H2AC Gene

  • Histones are basic nuclear proteins that are responsible for the nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This gene is intronless and encodes a member of the histone H2A family. Transcripts from this gene lack polyA tails but instead contain a palindromic termination element. This gene is found in the large histone gene cluster on chromosome 6. [provided by RefSeq, Jul 2008]

GeneCards Summary for HIST1H2AC Gene

HIST1H2AC (Histone Cluster 1, H2ac) is a Protein Coding gene. Among its related pathways are Disease and Cell Cycle, Mitotic. GO annotations related to this gene include protein heterodimerization activity. An important paralog of this gene is HIST1H2AM.

UniProtKB/Swiss-Prot for HIST1H2AC Gene

  • Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling

Gene Wiki entry for HIST1H2AC Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HIST1H2AC Gene

Genomics for HIST1H2AC Gene

Genomic Location for HIST1H2AC Gene

Start:
26,124,145 bp from pter
End:
26,139,116 bp from pter
Size:
14,972 bases
Orientation:
Plus strand

Genomic View for HIST1H2AC Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HIST1H2AC Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HIST1H2AC Gene

Regulatory Elements for HIST1H2AC Gene

Proteins for HIST1H2AC Gene

  • Protein details for HIST1H2AC Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q93077-H2A1C_HUMAN
    Recommended name:
    Histone H2A type 1-C
    Protein Accession:
    Q93077
    Secondary Accessions:
    • B2R4F7
    • O00775
    • O00776
    • O00777
    • O00778
    • Q540R1

    Protein attributes for HIST1H2AC Gene

    Size:
    130 amino acids
    Molecular mass:
    14105 Da
    Quaternary structure:
    • The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA

neXtProt entry for HIST1H2AC Gene

Proteomics data for HIST1H2AC Gene at MOPED

Post-translational modifications for HIST1H2AC Gene

  • Crotonylation (Kcr) is specifically present in male germ cells and marks testis-specific genes in post-meiotic cells, including X-linked genes that escape sex chromosome inactivation in haploid cells. Crotonylation marks active promoters and enhancers and confers resistance to transcriptional repressors. It is also associated with post-meiotically activated genes on autosomes.
  • Deiminated on Arg-4 in granulocytes upon calcium entry.
  • Glutamine methylation at Gln-105 (H2AQ104me) by FBL is specifically dedicated to polymerase I. It is present at 35S ribosomal DNA locus and impairs binding of the FACT complex (PubMed:24352239).
  • Monoubiquitination of Lys-120 (H2AK119Ub) by RING1, TRIM27 and RNF2/RING2 complex gives a specific tag for epigenetic transcriptional repression and participates in X chromosome inactivation of female mammals. It is involved in the initiation of both imprinted and random X inactivation. Ubiquitinated H2A is enriched in inactive X chromosome chromatin. Ubiquitination of H2A functions downstream of methylation of Lys-27 of histone H3 (H3K27me). H2AK119Ub by RNF2/RING2 can also be induced by ultraviolet and may be involved in DNA repair. Monoubiquitination of Lys-120 (H2AK119Ub) by TRIM27 may promote transformation of cells in a number of breast cancers (PubMed:25470042). Following DNA double-strand breaks (DSBs), it is ubiquitinated through Lys-63 linkage of ubiquitin moieties by the E2 ligase UBE2N and the E3 ligases RNF8 and RNF168, leading to the recruitment of repair proteins to sites of DNA damage. Ubiquitination at Lys-14 and Lys-16 (H2AK13Ub and H2AK15Ub, respectively) in response to DNA damage is initiated by RNF168 that mediates monoubiquitination at these 2 sites, and Lys-63-linked ubiquitin are then conjugated to monoubiquitin; RNF8 is able to extend Lys-63-linked ubiquitin chains in vitro. H2AK119Ub and ionizing radiation-induced Lys-63-linked ubiquitination (H2AK13Ub and H2AK15Ub) are distinct events.
  • Phosphorylation on Ser-2 (H2AS1ph) is enhanced during mitosis. Phosphorylation on Ser-2 by RPS6KA5/MSK1 directly represses transcription. Acetylation of H3 inhibits Ser-2 phosphorylation by RPS6KA5/MSK1. Phosphorylation at Thr-121 (H2AT120ph) by VPRBP is present in the regulatory region of many tumor suppresor genes and down-regulates their transcription.
  • Symmetric dimethylation on Arg-4 by the PRDM1/PRMT5 complex may play a crucial role in the germ-cell lineage.
  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys14, Lys16, Lys96, and Lys119

Other Protein References for HIST1H2AC Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

No data available for DME Specific Peptides for HIST1H2AC Gene

Domains for HIST1H2AC Gene

Gene Families for HIST1H2AC Gene

HGNC:
  • HIST :Histones / Replication-dependent

Protein Domains for HIST1H2AC Gene

UniProtKB/Swiss-Prot:

H2A1C_HUMAN
Family:
  • Belongs to the histone H2A family.:
    • Q93077
genes like me logo Genes that share domains with HIST1H2AC: view

Function for HIST1H2AC Gene

Molecular function for HIST1H2AC Gene

UniProtKB/Swiss-Prot Function: Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling

Gene Ontology (GO) - Molecular Function for HIST1H2AC Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0003677 DNA binding IEA --
GO:0043565 sequence-specific DNA binding --
GO:0046982 protein heterodimerization activity IEA --
genes like me logo Genes that share ontologies with HIST1H2AC: view

Phenotypes for HIST1H2AC Gene

GenomeRNAi human phenotypes for HIST1H2AC:
genes like me logo Genes that share phenotypes with HIST1H2AC: view

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for HIST1H2AC Gene

Localization for HIST1H2AC Gene

Subcellular locations from UniProtKB/Swiss-Prot for HIST1H2AC Gene

Nucleus. Chromosome.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for HIST1H2AC Gene COMPARTMENTS Subcellular localization image for HIST1H2AC gene
Compartment Confidence
nucleus 5

Gene Ontology (GO) - Cellular Components for HIST1H2AC Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000786 nucleosome IEA --
GO:0005622 intracellular --
GO:0005634 nucleus IDA 16319397
GO:0070062 extracellular exosome IDA 23533145
genes like me logo Genes that share ontologies with HIST1H2AC: view

Pathways for HIST1H2AC Gene

genes like me logo Genes that share pathways with HIST1H2AC: view

Pathways by source for HIST1H2AC Gene

1 GeneGo (Thomson Reuters Life Sciences Research) pathway for HIST1H2AC Gene
29 Reactome pathways for HIST1H2AC Gene
2 KEGG pathways for HIST1H2AC Gene

Gene Ontology (GO) - Biological Process for HIST1H2AC Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process --
GO:0008285 negative regulation of cell proliferation IMP 23956221
genes like me logo Genes that share ontologies with HIST1H2AC: view

Compounds for HIST1H2AC Gene

(1) HMDB Compounds for HIST1H2AC Gene

Compound Synonyms Cas Number PubMed IDs
Calcium
  • Ca
7440-70-2
genes like me logo Genes that share compounds with HIST1H2AC: view

Transcripts for HIST1H2AC Gene

mRNA/cDNA for HIST1H2AC Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(335) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HIST1H2AC Gene

Histone cluster 1, H2ac:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HIST1H2AC Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b · 3c
SP1: -
SP2:
SP3: -
SP4: - -

Relevant External Links for HIST1H2AC Gene

GeneLoc Exon Structure for
HIST1H2AC
ECgene alternative splicing isoforms for
HIST1H2AC

Expression for HIST1H2AC Gene

mRNA expression in normal human tissues for HIST1H2AC Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for HIST1H2AC Gene

This gene is overexpressed in Whole Blood (12.8).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for HIST1H2AC Gene

SOURCE GeneReport for Unigene cluster for HIST1H2AC Gene Hs.484950

genes like me logo Genes that share expressions with HIST1H2AC: view

Orthologs for HIST1H2AC Gene

This gene was present in the common ancestor of chordates.

Orthologs for HIST1H2AC Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia HIST1H2AC 36
  • 99.49 (n)
  • 100 (a)
HIST1H2AC 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia HIST1H2AC 36
  • 85.64 (n)
  • 100 (a)
HIST1H2AC 37
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia HIST1H2AC 37
  • 100 (a)
OneToOne
LOC488268 36
  • 89.23 (n)
  • 100 (a)
mouse
(Mus musculus)
Mammalia Hist1h2ac 16
Hist1h2al 37
  • 98 (a)
ManyToMany
Hist1h2ao 36
  • 87.69 (n)
  • 98.46 (a)
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 95 (a)
ManyToMany
-- 37
  • 91 (a)
ManyToMany
-- 37
  • 95 (a)
ManyToMany
-- 37
  • 95 (a)
ManyToMany
-- 37
  • 88 (a)
ManyToMany
-- 37
  • 91 (a)
ManyToMany
-- 37
  • 88 (a)
ManyToMany
rat
(Rattus norvegicus)
Mammalia Hist3h2a 36
  • 86.15 (n)
  • 99.23 (a)
chicken
(Gallus gallus)
Aves H2A-VII 37
  • 98 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia -- 37
  • 99 (a)
OneToMany
Species with no ortholog for HIST1H2AC:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for HIST1H2AC Gene

ENSEMBL:
Gene Tree for HIST1H2AC (if available)
TreeFam:
Gene Tree for HIST1H2AC (if available)

Paralogs for HIST1H2AC Gene

genes like me logo Genes that share paralogs with HIST1H2AC: view

Variants for HIST1H2AC Gene

Sequence variations from dbSNP and Humsavar for HIST1H2AC Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs198823 -- 26,122,705(+) AACTT(G/T)TCTGC upstream-variant-2KB
rs198824 -- 26,122,555(+) GGAGA(C/T)ACAGT upstream-variant-2KB
rs198825 -- 26,122,274(+) GTTAA(A/G)TAACT upstream-variant-2KB
rs1773284 -- 26,122,225(+) TTTCC(A/C)AGGTG upstream-variant-2KB
rs1773285 -- 26,122,471(+) ACCAT(G/T)AGTAA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for HIST1H2AC Gene

Variant ID Type Subtype PubMed ID
nsv428137 CNV Loss 18775914

Relevant External Links for HIST1H2AC Gene

HapMap Linkage Disequilibrium report
HIST1H2AC

Disorders for HIST1H2AC Gene

No disorders were found for HIST1H2AC Gene.

No data available for UniProtKB/Swiss-Prot for HIST1H2AC Gene

Publications for HIST1H2AC Gene

  1. Human histone gene organization: nonregular arrangement within a large cluster. (PMID: 9119399) Albig W. … Doenecke D. (Genomics 1997) 2 3 4
  2. The human and mouse replication-dependent histone genes. (PMID: 12408966) Marzluff W.F. … Maltais L.J. (Genomics 2002) 2 3 4
  3. Deimination of histone H2A and H4 at arginine 3 in HL-60 granulocytes. (PMID: 15823041) Hagiwara T. … Yamada M. (Biochemistry 2005) 3 4
  4. A 1.1-Mb transcript map of the hereditary hemochromatosis locus. (PMID: 9149941) Ruddy D.A. … Feder J.N. (Genome Res. 1997) 3 4
  5. Phosphorylation of histone H2A inhibits transcription on chromatin templates. (PMID: 15010469) Zhang Y. … Parvin J.D. (J. Biol. Chem. 2004) 3 4

Products for HIST1H2AC Gene

Sources for HIST1H2AC Gene

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