HINT3 Gene
protein-coding GIFtS : 45
GCID: GC06 P126277
histidine triad nucleotide binding protein 3
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Aliasesfor HINT3 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Histidine Triad Nucleotide Binding Protein 3 1 2 Histidine Triad Nucleotide-Binding Protein 32 HINT-32 3 HIT-Like Protein2 FLJ331261 EC 3.-.-.-3 HINT42
Export aliases for HINT3 gene to outside databases Previous GC identifers: GC06P125937 GC06P126125 GC06P126258 GC06P126319 GC06P123854
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Summariesfor HINT3 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for HINT3 : Histidine triad proteins, such as HINT3, are nucleotide hydrolases and transferases that act on the alpha-phosphate of ribonucleotides (Brenner, 2002 (PubMed 12119013)).(supplied by OMIM, Mar 2008) UniProtKB/Swiss-Prot: HINT3_HUMAN, Q9NQE9 Function : Hydrolyzes phosphoramidate and acyl-adenylate substrates
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Genomic Viewsfor HINT3 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000006.11 NC_018917.1 NT_025741.15 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the HINT3 gene promoter: GATA-3 Nkx5-1 GATA-1 GATA-2 Gfi-1 PPAR-alpha HSF2 FOXO1a IRF-7A FOXO1 Other transcription factors Search SABiosciences Chromatin IP Primers for HINT3 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat HINT3
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 6q22.32 Ensembl cytogenetic band: 6q22.32 HGNC cytogenetic band: 6q22.33 HINT3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 6 GeneLoc Exon Structure
GeneLoc location for GC06P126277: view genomic region
(about GC identifiers )
Start:
126,277,861 bp from pter
End:
126,301,390 bp from pter
Size:
23,530 bases
Orientation:
plus strand
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Proteinsfor HINT3 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: HINT3_HUMAN, Q9NQE9 (See
protein sequence )Recommended Name: Histidine triad nucleotide-binding protein 3 Size : 182 amino acids; 20361 Da
Subunit : Forms dimers to octamers and even larger oligomer
Subcellular location : Cytoplasm. Nucleus. Note=Localized as aggregates in the cytoplasm and the nucleus
Secondary accessions : B3KQ91 Q8N0Y9Explore the universe of human proteins at neXtProt for HINT3: NX_Q9NQE9 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q9NQE9 HINT3 Protein expression data from MOPED and PaxDb : About this image REFSEQ proteins: NP_612638.3 ENSEMBL proteins: ENSP00000229633 Human Recombinant Protein Products for HINT3: Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view) : About this table
HINT3 for ontologies About GeneDecksing HINT3 Antibody Products: Assay Products for HINT3:
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Protein
Domains / Familiesfor HINT3 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
HINT3 for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q9NQE9 ProtoNet protein and cluster: Q9NQE9
1 Blocks protein family : IPB001310 Histidine triad (HIT) protein UniProtKB/Swiss-Prot: HINT3_HUMAN, Q9NQE9 Similarity : Belongs to the HINT familySimilarity : Contains 1 HIT domain
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Functionfor HINT3 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory ,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase ,
shRNA from
OriGene ,
Sirion Biotech ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Sirion Biotech ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
Sirion Biotech ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Molecular Function: UniProtKB/Swiss-Prot Summary: HINT3_HUMAN, Q9NQE9 Function : Hydrolyzes phosphoramidate and acyl-adenylate substratesBiophysicochemical properties : Kinetic parameters: KM=1.5 uM for indolepropinoic acyl-adenylate; KM=22 uM for adenine;KM=29 uM for guanine; KM=32 uM for hypoxanthine; KM=121 uM for uracil; KM=181 uM for cytosine; Note=HINT3 prefers purine over pyrimidine-based substrates; Enzyme Number (IUBMB): EC 3.-.-.- 1
Gene Ontology (GO): 1 molecular function term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0016787 hydrolase activity
IEA --
HINT3 for ontologies About GeneDecksing Phenotypes: 1 GenomeRNAi human phenotype for HINT3 :Animal Models: Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for HINT3 (see all 2 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for HINT3OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: HINT3 (NM_138571 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for HINT3 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat HINT3
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for HINT3
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Pathways & Interactionsfor HINT3 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for HINT3 STRING Interaction
Network Preview (showing 1 interactants - click image to see more details)1 Interacting protein for HINT3 (ENSP00000229633 4 ) via UniProtKB, MINT, STRING , and/or I2D About this table
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Drugs & Compoundsfor HINT3 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for HINT3 Search CenterWatch for drugs/clinical trials and news about HINT3
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Transcriptsfor HINT3 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
Sirion Biotech ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for HINT3 gene: NM_138571.4 Unigene Cluster for HINT3:
Histidine triad nucleotide binding protein 3 Hs.72325 [show with all ESTs ] Unigene Representative Sequence: BX647228 1 Ensembl transcript including schematic representation, and UCSC links where relevant : ENST00000229633 (uc003qal.4 uc010keu.3 ) Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for HINT3 (see all 2 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for HINT3OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: HINT3 (NM_138571 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for HINT3 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat HINT3
Additional cDNA sequence: AJ420577.1 AK056858.1 AK057688.1 AK309857.1 AY035387.1 AY035388.1 AY486460.1 AY486461.1 BC015732.1 BX647228.1
3 DOTS entries : DT.107711 DT.95272692
DT.121322042 24/95 AceView cDNA sequences (see all 95 ):
AY035387 CR616633 AA746635 AA614784 BC015732 AA776796 AW137584 BX092395 BU735345 CD679358 AW614771 AI613268 AY486460 BG720989 AK056858 AI214398 AY486461 AI039638 BG575292 BF694956 BX501107 AI241517 CD653835 BX369108 GeneLoc Exon Structure 4 Alternative Splicing Database (ASD) splice patterns (SP) for HINT3 About this scheme ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b · 6c ^ 7a · 7b SP1 :         -                 SP2 :       -   -                 SP3 :         -                 SP4 :                        
ECgene alternative splicing isoforms for HINT3
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Expression for HINT3 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section HINT3 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: TTGTGATACTAbout this image HINT3 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table
1 LifeMap In Vivo Development Anatomical Compartment/Cell Tissue Anatomical Compartment
Cell Category (developmental path) Ovary Primary Follicle Primary Oocyte Female Gametocytes, Germ Cells Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
See HINT3 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for HINT3 SOURCE GeneReport for Unigene cluster: Hs.72325 SABiosciences Custom PCR Arrays for HINT3 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for HINT3Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat HINT3 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat HINT3 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat HINT3 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for HINT3
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Orthologsfor HINT3 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of eukaryotes.
Orthologs for HINT3 gene from 8/21 species (see all 21 ) About this table
ENSEMBL Gene Tree for HINT3 (if available)TreeFam Gene Tree for HINT3 (if available)
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Paralogsfor HINT3 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section --
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Genomic Variantsfor HINT3 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 6 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for HINT3 (126277861 - 126301390 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for HINT3: --
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing HINT3
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Disorders
/ Diseasesfor HINT3 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
HINT3 for disorders About MalaCards
HINT3 for disorders About GeneDecksing
OMIM gene information: 609998
OMIM disorders : --Export disorders for HINT3 gene to outside databases
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Publicationsfor HINT3 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for HINT3 gene, integrated from 9 sources (see all 16 ): (articles sorted by number of sources associating them with HINT3) Utopia : connect your pdf to the dynamic world of online information
Evidence that human histidine triad nucleotide binding protein 3 (Hint3) is a distinct branch of the histidine triad (HIT) superfamily. (PubMed id 17870088) 1 , 2 , 9 Chou T.F....Wagner C.R. (2007) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) Hint, Fhit, and GalT: function, structure, evolution, and mechanism of three branches of the histidine triad superfamily of nucleotide hydrolases and transferases. (PubMed id 12119013) 1 , 2 Brenner C. (2002) Adenosine monophosphoramidase activity of Hint and Hnt1 supports function of Kin28, Ccl1, and Tfb3. (PubMed id 11805111) 1 , 3 Bieganowski P....Brenner C. (2002) Systematic and quantitative assessment of the ubiquiti n-modified proteome. (PubMed id 21906983) 1 Kim W....Gygi S.P. (2011) Initial characterization of the human central proteome. (PubMed id 21269460) 2 Burkard T.R.... Colinge J. (2011) Interactions of pathological hallmark proteins: tubul in polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PubMed id 21832049) 1 OlA!h J....OvA!di J. (2011) Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048) 1 Danielsen J.M....Nielsen M.L. (2011) A proteome-wide, quantitative survey of in vivo ubiqui tylation sites reveals widespread regulatory roles. (PubMed id 21890473) 1 Wagner S.A....Choudhary C. (2011) A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648) 2 Dephoure N.... Gygi S.P. (2008)
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External Searches for HINT3 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing HINT3 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing HINT3 gene
(According to HUGE )
About This Section --
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Specialized Databases showing HINT3 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for HINT3 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for HINT3 gene: Search GeneIP for patents involving HINT3 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor HINT3 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 and Sirion Biotech , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript , LifeMap BioReagents , and Sirion Biotech , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences , In Situ Hybridization Assays from Advanced Cell Diagnostics , Animal models from inGenious Targeting Laboratory )About This Section
Browse OriGene Antibodies OriGene shRNA RFP for HINT3 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for HINT3 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for HINT3 OriGene Protein Over-expression Lysate for HINT3 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for HINT3 OriGene 3'-UTR Clone for HINT3 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for HINT3 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for HINT3 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for HINT3 OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for HINT3 OriGene Custom Protein Services for HINT3 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat HINT3 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing HINT3 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat HINT3 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat HINT3 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat HINT3 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat HINT3
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HINT3 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for HINT3
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Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat HINT3
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Aliases for HINT3
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Disorders / Diseases for HINT3
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Expression for HINT3
Function for HINT3
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Pathways / Interactions for HINT3
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Transcripts for HINT3
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