Aliases for HIGD1AP3 Gene
Subcategory (RNA class) for HIGD1AP3 Gene
lncRNA
Aliases for HIGD1AP3 Gene
External Ids for HIGD1AP3 Gene
- HGNC: 42998
- Entrez Gene: 100859920
- Ensembl: ENSG00000248929
ORGUL Members for HIGD1AP3 Gene
Previous GeneCards Identifiers for HIGD1AP3 Gene
- GC05P174060
Summaries for HIGD1AP3 Gene
GeneCards Summary for HIGD1AP3 Gene
HIGD1AP3 (HIG1 Hypoxia Inducible Domain Family Member 1A Pseudogene 3) is a Pseudogene, and is affiliated with the lncRNA class.
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HIGD1AP3 Gene
Genomics for HIGD1AP3 Gene
Regulatory Elements for HIGD1AP3 Gene
Enhancers for HIGD1AP3 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH05G174635 | 0.6 | ENCODE | 0.7 | +3.4 | 3351 | 0.8 | PKNOX1 MNT RAD21 EP300 ZNF592 ZNF664 JUND CTBP1 RCOR1 | HIGD1AP3 LOC105377741 |
| GH05G174615 | 1 | ENCODE | 0.4 | -15.4 | -15414 | 4.1 | PKNOX1 ARID4B SIN3A ZNF48 ZNF2 YY1 SLC30A9 ZNF143 DEK ZNF263 | MSX2 LOC105377740 HIGD1AP3 |
| GH05G174717 | 1.2 | FANTOM5 ENCODE | 0.2 | +87.1 | 87085 | 4.5 | KLF17 BMI1 RAD21 ELK1 FOS RCOR1 ZNF263 ZEB2 KDM1A ZBTB33 | MSX2 LOC105377741 HIGD1AP3 |
| GH05G174624 | 0.6 | ENCODE | 0.4 | -8.3 | -8264 | 1.3 | CTCF KLF17 ZEB2 CEBPG RAD21 JUND PRDM10 WT1 TRIM28 | HIGD1AP3 LOC105377740 |
| GH05G174693 | 0.7 | ENCODE | 0.2 | +61.0 | 60984 | 0.2 | KLF1 ZNF362 NFIB ZNF384 KLF4 DPF2 FOXA1 OSR2 ZNF579 CTBP1 | MSX2 LOC105377741 HIGD1AP3 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around HIGD1AP3 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Location for HIGD1AP3 Gene
- Chromosome:
- 5
- Start:
- 174,632,929 bp from pter
- End:
- 174,633,209 bp from pter
- Size:
- 281 bases
- Orientation:
- Plus strand
Genomic View for HIGD1AP3 Gene
Genes around HIGD1AP3 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 5q35.2 by Ensembl
- 5q35.2 by Entrez Gene
- 5q35.2 by HGNC
HIGD1AP3 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for HIGD1AP3 Gene
Proteins for HIGD1AP3 Gene
Post-translational modifications for HIGD1AP3 Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for HIGD1AP3
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for HIGD1AP3
- Origene Custom Protein Services for HIGD1AP3
- Search GeneTex for Proteins for HIGD1AP3
Assay Products
No data available for DME Specific Peptides for HIGD1AP3 Gene
Domains & Families for HIGD1AP3 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HIGD1AP3 Gene
Function for HIGD1AP3 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Search ViGene Biosciences for HIGD1AP3
CRISPR Products
- Browse CRISPR knockouts for HIGD1AP3
miRNA Products
- Search ViGene Biosciences for HIGD1AP3
Inhibitory RNA Products
- Search ViGene Biosciences for HIGD1AP3
Cell Line Products
- Search ViGene Biosciences for HIGD1AP3
Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HIGD1AP3 Gene
Localization for HIGD1AP3 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HIGD1AP3 Gene
Transcripts for HIGD1AP3 Gene
mRNA/cDNA for HIGD1AP3 Gene
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
CRISPR Products
- Browse CRISPR knockouts for HIGD1AP3
miRNA Products
- Search ViGene Biosciences for HIGD1AP3
Inhibitory RNA Products
- Search ViGene Biosciences for HIGD1AP3
Flow Cytometry Products
Expression for HIGD1AP3 Gene
NURSA nuclear receptor signaling pathways regulating expression of HIGD1AP3 Gene:
HIGD1AP3
Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HIGD1AP3 Gene
Orthologs for HIGD1AP3 Gene
No data available for Orthologs for HIGD1AP3 Gene
Paralogs for HIGD1AP3 Gene
No data available for Paralogs for HIGD1AP3 Gene
Variants for HIGD1AP3 Gene
Relevant External Links for HIGD1AP3 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- HIGD1AP3
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HIGD1AP3 Gene
Disorders for HIGD1AP3 Gene
No disorders were found for HIGD1AP3 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HIGD1AP3 Gene
Publications for HIGD1AP3 Gene
No publications were found for HIGD1AP3 Gene.
Products for HIGD1AP3 Gene
- Browse R&D Systems for Antibodies
- Browse R&D Systems for Human Recombinant Proteins
- Browse R&D Systems for biochemical assays
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
- Browse Activity Assays
- Browse cDNA Clones
- Browse Cell Culture Products
- Browse Cell Selection and Detection Kits
- Browse DNA Damage and Repair Kits
- Browse ELISpot/FluoroSpot Kits and Development Modules
- Browse Flow Cytometry Kits
- Browse Immunoprecipitation Assays
- Browse Luminex Assays
- Browse Peptides
- Browse Proteome Profiler Antibody Arrays
- Browse Small Molecules
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for HIGD1AP3
- Origene Custom Protein Services for HIGD1AP3
- Browse OriGene Inhibitory RNA Products For HIGD1AP3
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for HIGD1AP3
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For HIGD1AP3
- GenScript: Custom all cDNA clones Services for HIGD1AP3
- GenScript Custom Purified and Recombinant Proteins Services for HIGD1AP3
- GenScript Custom Assay Services for HIGD1AP3
- GenScript Custom overexpressing Cell Line Services for HIGD1AP3
- Browse GenScript CRISPR for HIGD1AP3
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
- Gene Synthesis: Any Gene in Any Vector
- Vector-based siRNA and miRNA, Ready for Transfection
- Gene Mutant Library, Variants up to 10^11
- Plasmid Preparation
- GenScript Custom Peptide Services for HIGD1AP3
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Proteins
- Sino Biological Antibodies
- Sino Biological ELISA Kits and Pair Sets
- Sino Biological Cell Lysates
- Sino Biological qPCR Primers
- Sino Biological CRO Services for Proteins, Antibodies and Genes
- Sino Biological Transfection Reagents
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- Cyagen custom Knockout/knockin (KOKI) mouse models for HIGD1AP3
- VectorBuilder custom plasmid, inducible vectors for HIGD1AP3
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for HIGD1AP3
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for HIGD1AP3 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
- (126) GTR
- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer