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Aliases for HIGD1AP18 Gene

Subcategory (RNA class) for HIGD1AP18 Gene

lncRNA

Aliases for HIGD1AP18 Gene

  • HIG1 Hypoxia Inducible Domain Family Member 1A Pseudogene 18 2 3 5
  • HIG1 Hypoxia Inducible Domain Family, Member 1A Pseudogene 18 2

External Ids for HIGD1AP18 Gene

ORGUL Members for HIGD1AP18 Gene

Previous GeneCards Identifiers for HIGD1AP18 Gene

  • GC08M077928

Summaries for HIGD1AP18 Gene

GeneCards Summary for HIGD1AP18 Gene

HIGD1AP18 (HIG1 Hypoxia Inducible Domain Family Member 1A Pseudogene 18) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HIGD1AP18 Gene

Genomics for HIGD1AP18 Gene

Regulatory Elements for HIGD1AP18 Gene

Enhancers for HIGD1AP18 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G076680 2.4 Ensembl ENCODE dbSUPER 4.1 +331.2 331160 5.3 PKNOX1 SIN3A FEZF1 ZNF2 YY1 GLIS2 ZNF202 TSHZ1 REST CBX8 HIGD1AP18 ZFHX4 ZFHX4-AS1
GH08G077130 2.2 VISTA ENCODE 0.1 -117.1 -117099 1.6 NFIB ZNF10 OVOL3 FEZF1 ZNF394 ZNF843 OSR2 POLR2A SMARCA4 FOXP2 GC08P077131 HIGD1AP18
GH08G077009 0.2 dbSUPER 0.7 +3.9 3892 1.4 HIGD1AP18 PEX2
GH08G077052 0.4 ENCODE 0.3 -39.4 -39419 1.0 GATA3 JUND HIGD1AP18 GC08P077131
GH08G077117 1.1 Ensembl ENCODE 0.1 -105.1 -105125 2.6 PKNOX1 INSM2 FEZF1 ZNF2 ZBTB40 GATA2 ZNF366 SCRT2 FOS RELB GC08P077131 HIGD1AP18
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HIGD1AP18 on UCSC Golden Path with GeneCards custom track

Genomic Location for HIGD1AP18 Gene

Chromosome:
8
Start:
77,013,751 bp from pter
End:
77,014,052 bp from pter
Size:
302 bases
Orientation:
Minus strand

Genomic View for HIGD1AP18 Gene

Genes around HIGD1AP18 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HIGD1AP18 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HIGD1AP18 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HIGD1AP18 Gene

Proteins for HIGD1AP18 Gene

Post-translational modifications for HIGD1AP18 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HIGD1AP18 Gene

Domains & Families for HIGD1AP18 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HIGD1AP18 Gene

Function for HIGD1AP18 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HIGD1AP18 Gene

Localization for HIGD1AP18 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HIGD1AP18 Gene

Pathways & Interactions for HIGD1AP18 Gene

SuperPathways for HIGD1AP18 Gene

No Data Available

Interacting Proteins for HIGD1AP18 Gene

Gene Ontology (GO) - Biological Process for HIGD1AP18 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HIGD1AP18 Gene

Drugs & Compounds for HIGD1AP18 Gene

No Compound Related Data Available

Transcripts for HIGD1AP18 Gene

mRNA/cDNA for HIGD1AP18 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HIGD1AP18 Gene

No ASD Table

Relevant External Links for HIGD1AP18 Gene

GeneLoc Exon Structure for
HIGD1AP18
ECgene alternative splicing isoforms for
HIGD1AP18

Expression for HIGD1AP18 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HIGD1AP18 Gene

NURSA nuclear receptor signaling pathways regulating expression of HIGD1AP18 Gene:

HIGD1AP18
genes like me logo Genes that share expression patterns with HIGD1AP18: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HIGD1AP18 Gene

Orthologs for HIGD1AP18 Gene

Evolution for HIGD1AP18 Gene

ENSEMBL:
Gene Tree for HIGD1AP18 (if available)
TreeFam:
Gene Tree for HIGD1AP18 (if available)

No data available for Orthologs for HIGD1AP18 Gene

Paralogs for HIGD1AP18 Gene

No data available for Paralogs for HIGD1AP18 Gene

Variants for HIGD1AP18 Gene

Relevant External Links for HIGD1AP18 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HIGD1AP18

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HIGD1AP18 Gene

Disorders for HIGD1AP18 Gene

No disorders were found for HIGD1AP18 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HIGD1AP18 Gene

Publications for HIGD1AP18 Gene

No publications were found for HIGD1AP18 Gene.

Products for HIGD1AP18 Gene

Sources for HIGD1AP18 Gene

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