Free for academic non-profit institutions. Other users need a Commercial license

Aliases for HIGD1AP17 Gene

Subcategory (RNA class) for HIGD1AP17 Gene

antisense

Aliases for HIGD1AP17 Gene

  • HIG1 Hypoxia Inducible Domain Family Member 1A Pseudogene 17 2 3 5
  • HIG1 Hypoxia Inducible Domain Family, Member 1A Pseudogene 17 2

External Ids for HIGD1AP17 Gene

ORGUL Members for HIGD1AP17 Gene

Previous GeneCards Identifiers for HIGD1AP17 Gene

  • GC00U934010
  • GC14P031434

Summaries for HIGD1AP17 Gene

GeneCards Summary for HIGD1AP17 Gene

HIGD1AP17 (HIG1 Hypoxia Inducible Domain Family Member 1A Pseudogene 17) is a Pseudogene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HIGD1AP17 Gene

Genomics for HIGD1AP17 Gene

Regulatory Elements for HIGD1AP17 Gene

Enhancers for HIGD1AP17 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14G030967 0.8 ENCODE 0.7 +3.2 3184 0.2 SOX13 KLF1 FOXA2 ZNF792 SAP130 ARID4B SIN3A THRB RARA FOXK2 MIR624 AP4S1 RNU6-541P HIGD1AP17
GH14G030966 0.7 ENCODE 0.7 +2.5 2479 0.6 ESRRA ETV1 HLF ZNF7 TEAD3 MIER3 JUND FOXK2 BCL6B ZNF207 AP4S1 MIR624 RNU6-541P STRN3 HIGD1AP17
GH14G030980 1.2 Ensembl ENCODE 0.4 +16.1 16075 0.8 FOXA2 SIN3A ARID4B ZNF48 RAD21 RFX5 EGR1 ZNF143 RCOR1 MIXL1 MIR624 AP4S1 RNU6-541P STRN3 HIGD1AP17
GH14G030988 1.1 ENCODE 0.3 +24.4 24424 1.2 HNRNPUL1 HDGF PKNOX1 FOXA2 CREB3L1 MLX AGO1 ZFP64 ARID4B SIN3A MIR624 AP4S1 STRN3 HECTD1 HIGD1AP17
GH14G030994 1.1 Ensembl ENCODE 0.3 +32.4 32391 5.1 PKNOX1 CBX3 FUS BMI1 FEZF1 DNMT3B ZNF121 CBX5 FOS IKZF2 STRN3 AP4S1 RNU6-541P DTD2 MIR624 HIGD1AP17
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HIGD1AP17 on UCSC Golden Path with GeneCards custom track

Genomic Location for HIGD1AP17 Gene

Chromosome:
14
Start:
30,964,326 bp from pter
End:
30,964,622 bp from pter
Size:
297 bases
Orientation:
Plus strand

Genomic View for HIGD1AP17 Gene

Genes around HIGD1AP17 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HIGD1AP17 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HIGD1AP17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HIGD1AP17 Gene

Proteins for HIGD1AP17 Gene

Post-translational modifications for HIGD1AP17 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HIGD1AP17 Gene

Domains & Families for HIGD1AP17 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HIGD1AP17 Gene

Function for HIGD1AP17 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HIGD1AP17 Gene

Localization for HIGD1AP17 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HIGD1AP17 Gene

Pathways & Interactions for HIGD1AP17 Gene

SuperPathways for HIGD1AP17 Gene

No Data Available

Interacting Proteins for HIGD1AP17 Gene

Gene Ontology (GO) - Biological Process for HIGD1AP17 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HIGD1AP17 Gene

Drugs & Compounds for HIGD1AP17 Gene

No Compound Related Data Available

Transcripts for HIGD1AP17 Gene

mRNA/cDNA for HIGD1AP17 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HIGD1AP17 Gene

No ASD Table

Relevant External Links for HIGD1AP17 Gene

GeneLoc Exon Structure for
HIGD1AP17
ECgene alternative splicing isoforms for
HIGD1AP17

Expression for HIGD1AP17 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HIGD1AP17 Gene

NURSA nuclear receptor signaling pathways regulating expression of HIGD1AP17 Gene:

HIGD1AP17
genes like me logo Genes that share expression patterns with HIGD1AP17: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HIGD1AP17 Gene

Orthologs for HIGD1AP17 Gene

Evolution for HIGD1AP17 Gene

ENSEMBL:
Gene Tree for HIGD1AP17 (if available)
TreeFam:
Gene Tree for HIGD1AP17 (if available)

No data available for Orthologs for HIGD1AP17 Gene

Paralogs for HIGD1AP17 Gene

No data available for Paralogs for HIGD1AP17 Gene

Variants for HIGD1AP17 Gene

Relevant External Links for HIGD1AP17 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HIGD1AP17

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HIGD1AP17 Gene

Disorders for HIGD1AP17 Gene

No disorders were found for HIGD1AP17 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HIGD1AP17 Gene

Publications for HIGD1AP17 Gene

No publications were found for HIGD1AP17 Gene.

Products for HIGD1AP17 Gene

Sources for HIGD1AP17 Gene

Content
Loading form....