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Aliases for HIGD1AP16 Gene

Subcategory (RNA class) for HIGD1AP16 Gene

lncRNA

Aliases for HIGD1AP16 Gene

  • HIG1 Hypoxia Inducible Domain Family Member 1A Pseudogene 16 2 3 5
  • HIG1 Hypoxia Inducible Domain Family, Member 1A Pseudogene 16 2

External Ids for HIGD1AP16 Gene

ORGUL Members for HIGD1AP16 Gene

Previous GeneCards Identifiers for HIGD1AP16 Gene

  • GC20P034467

Summaries for HIGD1AP16 Gene

GeneCards Summary for HIGD1AP16 Gene

HIGD1AP16 (HIG1 Hypoxia Inducible Domain Family Member 1A Pseudogene 16) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for HIGD1AP16 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HIGD1AP16 Gene

Genomics for HIGD1AP16 Gene

GeneHancer (GH) Regulatory Elements for HIGD1AP16 Gene

Promoters and enhancers for HIGD1AP16 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I035879 Enhancer 0.4 dbSUPER 550.8 +1.7 1650 1.4 PRDM6 ZNF366 PRDM1 HIGD1AP16 RNU6-937P PHF20 RBM39 NFS1 ROMO1 CNBD2 CEP250 LOC102725201 GC20P035889
GH20I035874 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.8 -2.9 -2917 2.6 PKNOX1 ATF1 ARNT SIN3A FEZF1 ZNF2 BRCA1 GTF3C2 ZNF213 KLF7 CPNE1 SOGA1 NFS1 RBM39 PHF20 ROMO1 RNU6-937P CNBD2 CEP250 GDF5
GH20I035881 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +5.4 5352 4.6 HDGF PKNOX1 ARID4B SIN3A FEZF1 ZNF2 ZNF48 GTF3C2 ZNF121 ELK1 CPNE1 RNU6-937P PHF20 RBM39 NFS1 ROMO1 CNBD2 CEP250 LOC102725201 GC20P035889
GH20I035886 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 +8.6 8568 1.6 SMARCE1 HDAC1 TEAD4 ZBTB40 POLR2A IKZF1 CREB1 RCOR1 CHD2 GC20P035889 RNU4-40P CPNE1 HIGD1AP16 PHF20
GH20I035870 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 -6.7 -6735 2.7 ZNF146 PKNOX1 ZNF362 MAX ZNF335 NFIC PRDM6 POLR2A ZNF366 ZNF512 CPNE1 RBM39 PHF20 NFS1 ROMO1 RNU6-937P CEP250 GDF5 MIR1289-1 CNBD2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HIGD1AP16 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HIGD1AP16 Gene

Genomic Locations for HIGD1AP16 Gene
chr20:35,878,434-35,878,733
(GRCh38/hg38)
Size:
300 bases
Orientation:
Plus strand
chr20:34,466,398-34,466,655
(GRCh37/hg19)

Genomic View for HIGD1AP16 Gene

Genes around HIGD1AP16 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HIGD1AP16 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HIGD1AP16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HIGD1AP16 Gene

Proteins for HIGD1AP16 Gene

Post-translational modifications for HIGD1AP16 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HIGD1AP16 Gene

Domains & Families for HIGD1AP16 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HIGD1AP16 Gene

Function for HIGD1AP16 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HIGD1AP16 Gene

Localization for HIGD1AP16 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HIGD1AP16 Gene

Pathways & Interactions for HIGD1AP16 Gene

SuperPathways for HIGD1AP16 Gene

No Data Available

Interacting Proteins for HIGD1AP16 Gene

Gene Ontology (GO) - Biological Process for HIGD1AP16 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HIGD1AP16 Gene

Drugs & Compounds for HIGD1AP16 Gene

No Compound Related Data Available

Transcripts for HIGD1AP16 Gene

mRNA/cDNA for HIGD1AP16 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HIGD1AP16 Gene

No ASD Table

Relevant External Links for HIGD1AP16 Gene

GeneLoc Exon Structure for
HIGD1AP16
ECgene alternative splicing isoforms for
HIGD1AP16

Expression for HIGD1AP16 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HIGD1AP16 Gene

NURSA nuclear receptor signaling pathways regulating expression of HIGD1AP16 Gene:

HIGD1AP16
genes like me logo Genes that share expression patterns with HIGD1AP16: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HIGD1AP16 Gene

Orthologs for HIGD1AP16 Gene

Evolution for HIGD1AP16 Gene

ENSEMBL:
Gene Tree for HIGD1AP16 (if available)
TreeFam:
Gene Tree for HIGD1AP16 (if available)

No data available for Orthologs for HIGD1AP16 Gene

Paralogs for HIGD1AP16 Gene

No data available for Paralogs for HIGD1AP16 Gene

Variants for HIGD1AP16 Gene

Additional Variant Information for HIGD1AP16 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HIGD1AP16

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HIGD1AP16 Gene

Disorders for HIGD1AP16 Gene

No disorders were found for HIGD1AP16 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for HIGD1AP16 Gene

Publications for HIGD1AP16 Gene

No publications were found for HIGD1AP16 Gene.

Products for HIGD1AP16 Gene

Sources for HIGD1AP16 Gene

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