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Aliases for HIF1A-AS2 Gene

Subcategory (RNA class) for HIF1A-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HIF1A-AS2 Gene

  • HIF1A Antisense RNA 2 2 3 5
  • HIF1A Antisense RNA 2 (Non-Protein Coding) 2 3
  • 3aHIF-1A 3
  • AHIF 3

External Ids for HIF1A-AS2 Gene

Previous GeneCards Identifiers for HIF1A-AS2 Gene

  • GC14U901305
  • GC14M062183

Summaries for HIF1A-AS2 Gene

GeneCards Summary for HIF1A-AS2 Gene

HIF1A-AS2 (HIF1A Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HIF1A-AS2 Gene

Genomics for HIF1A-AS2 Gene

Regulatory Elements for HIF1A-AS2 Gene

Enhancers for HIF1A-AS2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14G061551 2.1 FANTOM5 Ensembl ENCODE dbSUPER 4.4 +186.4 186405 27.2 MLX ZFP64 FEZF1 DMAP1 YY1 ZNF143 ZNF263 NFYC TBX21 SSRP1 HIF1A FLJ22447 LOC101927780 HIF1A-AS2 LOC105370525
GH14G061747 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -1.1 -1101 8.9 PKNOX1 ARNT WRNIP1 SIN3A FEZF1 ZNF143 ZNF207 JUNB REST TBX21 SNAPC1 FLJ22447 SRMP2 HIF1A LOC105370526 HIF1A-AS2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HIF1A-AS2 on UCSC Golden Path with GeneCards custom track

Promoters for HIF1A-AS2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000069438 497 2001 PKNOX1 ATF1 ARNT WRNIP1 NSD2 SIN3A FEZF1 GLIS2 ZNF143 ZNF207

Genomic Location for HIF1A-AS2 Gene

Chromosome:
14
Start:
61,715,558 bp from pter
End:
61,751,097 bp from pter
Size:
35,540 bases
Orientation:
Minus strand

Genomic View for HIF1A-AS2 Gene

Genes around HIF1A-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HIF1A-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HIF1A-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HIF1A-AS2 Gene

Proteins for HIF1A-AS2 Gene

Post-translational modifications for HIF1A-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HIF1A-AS2 Gene

Domains & Families for HIF1A-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HIF1A-AS2 Gene

Function for HIF1A-AS2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HIF1A-AS2 Gene

Localization for HIF1A-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HIF1A-AS2 Gene

Pathways & Interactions for HIF1A-AS2 Gene

SuperPathways for HIF1A-AS2 Gene

No Data Available

Interacting Proteins for HIF1A-AS2 Gene

Gene Ontology (GO) - Biological Process for HIF1A-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HIF1A-AS2 Gene

Transcripts for HIF1A-AS2 Gene

mRNA/cDNA for HIF1A-AS2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HIF1A-AS2 Gene

No ASD Table

Relevant External Links for HIF1A-AS2 Gene

GeneLoc Exon Structure for
HIF1A-AS2
ECgene alternative splicing isoforms for
HIF1A-AS2

Expression for HIF1A-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HIF1A-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for HIF1A-AS2 Gene

This gene is overexpressed in Heart - Atrial Appendage (x9.0) and Heart - Left Ventricle (x6.1).
genes like me logo Genes that share expression patterns with HIF1A-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HIF1A-AS2 Gene

Orthologs for HIF1A-AS2 Gene

Evolution for HIF1A-AS2 Gene

ENSEMBL:
Gene Tree for HIF1A-AS2 (if available)
TreeFam:
Gene Tree for HIF1A-AS2 (if available)

No data available for Orthologs for HIF1A-AS2 Gene

Paralogs for HIF1A-AS2 Gene

No data available for Paralogs for HIF1A-AS2 Gene

Variants for HIF1A-AS2 Gene

Sequence variations from dbSNP and Humsavar for HIF1A-AS2 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs1000192678 -- 61,748,985(+) GTAGG(A/C)AGTGC intron-variant, nc-transcript-variant
rs1000351887 -- 61,747,656(+) TTAAA(A/C)CTGGA intron-variant, nc-transcript-variant, utr-variant-3-prime
rs1000798130 -- 61,750,209(+) TCAAG(G/T)GCCAT intron-variant, upstream-variant-2KB
rs1001681022 -- 61,748,740(+) GACTC(C/T)AAAGT intron-variant, nc-transcript-variant
rs1002016670 -- 61,747,018(+) TGCTC(C/G)TATAC intron-variant, downstream-variant-500B, reference, missense, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for HIF1A-AS2 Gene

Variant ID Type Subtype PubMed ID
nsv1300 CNV deletion 18451855

Relevant External Links for HIF1A-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HIF1A-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HIF1A-AS2 Gene

Disorders for HIF1A-AS2 Gene

Relevant External Links for HIF1A-AS2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HIF1A-AS2

No disorders were found for HIF1A-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HIF1A-AS2 Gene

Publications for HIF1A-AS2 Gene

  1. Characterization of novel antisense HIF-1I+ transcripts in human cancers. (PMID: 21897117) Bertozzi D. … Capranico G. (Cell Cycle 2011) 2 3 64
  2. A three-long noncoding RNA signature as a diagnostic biomarker for differentiating between triple-negative and non-triple-negative breast cancers. (PMID: 28248879) Liu M. … Liu Y.J. (Medicine (Baltimore) 2017) 3 64
  3. Tetracycline-inducible shRNA targeting antisense long non-coding RNA HIF1A-AS2 represses the malignant phenotypes of bladder cancer. (PMID: 27018306) Chen M. … Huang W. (Cancer Lett. 2016) 3 64
  4. Transcriptome Analysis of Triple-Negative Breast Cancer Reveals an Integrated mRNA-lncRNA Signature with Predictive and Prognostic Value. (PMID: 26921339) Jiang Y.Z. … Shao Z.M. (Cancer Res. 2016) 3 64
  5. The Long Non-coding RNA HIF1A-AS2 Facilitates the Maintenance of Mesenchymal Glioblastoma Stem-like Cells in Hypoxic Niches. (PMID: 27264189) Mineo M. … Bronisz A. (Cell Rep 2016) 3 64

Products for HIF1A-AS2 Gene

Sources for HIF1A-AS2 Gene

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