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Aliases for HIF1A-AS2 Gene

Subcategory (RNA class) for HIF1A-AS2 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HIF1A-AS2 Gene

  • HIF1A Antisense RNA 2 2 3 5
  • HIF1A Antisense RNA 2 (Non-Protein Coding) 2 3
  • 3aHIF-1A 3
  • AHIF 3

External Ids for HIF1A-AS2 Gene

Previous GeneCards Identifiers for HIF1A-AS2 Gene

  • GC14U901305
  • GC14M062183

Summaries for HIF1A-AS2 Gene

GeneCards Summary for HIF1A-AS2 Gene

HIF1A-AS2 (HIF1A Antisense RNA 2) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HIF1A-AS2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HIF1A-AS2 Gene

Genomics for HIF1A-AS2 Gene

GeneHancer (GH) Regulatory Elements for HIF1A-AS2 Gene

Promoters and enhancers for HIF1A-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14I061747 Promoter/Enhancer 2.2 FANTOM5 Ensembl ENCODE dbSUPER 550.8 -1.1 -1101 8.9 PKNOX1 SMAD1 ARNT SIN3A FEZF1 IRF4 ZNF213 ZNF207 ZNF143 JUNB HIF1A-AS2 LOC105370526 SNAPC1 FLJ22447 SRMP2 HIF1A GC14M061747 GC14M061748 GC14P061748 ENSG00000258964
GH14I061551 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 4.5 +186.4 186404 27.2 CLOCK MLX ZFP64 FEZF1 DMAP1 YY1 ZNF213 E2F8 NFYC SSRP1 HIF1A SLC38A6 TRMT5 SIX4 FLJ22447 LINC01303 HIF1A-AS2 LOC105370525 ENSG00000258989
GH14I061717 Enhancer 1 Ensembl ENCODE dbSUPER 0.3 +31.4 31440 3.4 KLF1 ZNF10 ZBTB8A ZNF217 PRDM6 SCRT2 ZBTB33 SPI1 FLJ22447 HIF1A LINC01303 GC14P061728 HIF1A-AS1 HIF1A-AS2 LOC105370526
GH14I061730 Enhancer 0.7 ENCODE dbSUPER 0.3 +20.1 20139 0.2 PAF1 CTCF SMC3 RAD21 ENSG00000258964 GC14P061728 LOC105370526 HIF1A-AS2 HIF1A
GH14I061736 Enhancer 0.5 dbSUPER 0.4 +14.2 14150 1.6 PAF1 ZNF316 MAFG NFE2 BATF EMSY SNAPC1 FLJ22447 ENSG00000258964 GC14P061745 HIF1A-AS2 LOC105370526 HIF1A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HIF1A-AS2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HIF1A-AS2 Gene

Genomic Locations for HIF1A-AS2 Gene
chr14:61,715,558-61,751,097
(GRCh38/hg38)
Size:
35,540 bases
Orientation:
Minus strand
chr14:62,182,276-62,217,815
(GRCh37/hg19)

Genomic View for HIF1A-AS2 Gene

Genes around HIF1A-AS2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HIF1A-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HIF1A-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HIF1A-AS2 Gene

Proteins for HIF1A-AS2 Gene

Post-translational modifications for HIF1A-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HIF1A-AS2 Gene

Domains & Families for HIF1A-AS2 Gene

Gene Families for HIF1A-AS2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HIF1A-AS2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HIF1A-AS2 Gene

Function for HIF1A-AS2 Gene

Phenotypes From GWAS Catalog for HIF1A-AS2 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HIF1A-AS2 Gene

Localization for HIF1A-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HIF1A-AS2 Gene

Pathways & Interactions for HIF1A-AS2 Gene

SuperPathways for HIF1A-AS2 Gene

No Data Available

Interacting Proteins for HIF1A-AS2 Gene

Gene Ontology (GO) - Biological Process for HIF1A-AS2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HIF1A-AS2 Gene

Drugs & Compounds for HIF1A-AS2 Gene

No Compound Related Data Available

Transcripts for HIF1A-AS2 Gene

mRNA/cDNA for HIF1A-AS2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HIF1A-AS2 Gene

No ASD Table

Relevant External Links for HIF1A-AS2 Gene

GeneLoc Exon Structure for
HIF1A-AS2
ECgene alternative splicing isoforms for
HIF1A-AS2

Expression for HIF1A-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HIF1A-AS2 Gene

mRNA differential expression in normal tissues according to GTEx for HIF1A-AS2 Gene

This gene is overexpressed in Heart - Atrial Appendage (x9.0) and Heart - Left Ventricle (x6.1).
genes like me logo Genes that share expression patterns with HIF1A-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HIF1A-AS2 Gene

Orthologs for HIF1A-AS2 Gene

Evolution for HIF1A-AS2 Gene

ENSEMBL:
Gene Tree for HIF1A-AS2 (if available)
TreeFam:
Gene Tree for HIF1A-AS2 (if available)

No data available for Orthologs for HIF1A-AS2 Gene

Paralogs for HIF1A-AS2 Gene

No data available for Paralogs for HIF1A-AS2 Gene

Variants for HIF1A-AS2 Gene

Sequence variations from dbSNP and Humsavar for HIF1A-AS2 Gene

SNP ID Clin Chr 14 pos Variation AA Info Type
rs1000192678 -- 61,748,985(-) A/C non_coding_transcript_variant
rs1000351887 -- 61,747,656(-) C/A non_coding_transcript_variant
rs1000798130 -- 61,750,209(-) T/G upstream_transcript_variant
rs1001681022 -- 61,748,740(-) T/C non_coding_transcript_variant
rs1002016670 -- 61,747,018(-) C/G downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for HIF1A-AS2 Gene

Variant ID Type Subtype PubMed ID
nsv1300 CNV deletion 18451855

Additional Variant Information for HIF1A-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HIF1A-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HIF1A-AS2 Gene

Disorders for HIF1A-AS2 Gene

Additional Disease Information for HIF1A-AS2

No disorders were found for HIF1A-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HIF1A-AS2 Gene

Publications for HIF1A-AS2 Gene

  1. Tetracycline-inducible shRNA targeting antisense long non-coding RNA HIF1A-AS2 represses the malignant phenotypes of bladder cancer. (PMID: 27018306) Chen M … Huang W (Cancer letters 2016) 2 3 58
  2. Characterization of novel antisense HIF-1α transcripts in human cancers. (PMID: 21897117) Bertozzi D … Capranico G (Cell cycle (Georgetown, Tex.) 2011) 2 3 58
  3. A three-long noncoding RNA signature as a diagnostic biomarker for differentiating between triple-negative and non-triple-negative breast cancers. (PMID: 28248879) Liu M … Liu YJ (Medicine 2017) 3 58
  4. The Long Non-coding RNA HIF1A-AS2 Facilitates the Maintenance of Mesenchymal Glioblastoma Stem-like Cells in Hypoxic Niches. (PMID: 27264189) Mineo M … Bronisz A (Cell reports 2016) 3 58
  5. Transcriptome Analysis of Triple-Negative Breast Cancer Reveals an Integrated mRNA-lncRNA Signature with Predictive and Prognostic Value. (PMID: 26921339) Jiang YZ … Shao ZM (Cancer research 2016) 3 58

Products for HIF1A-AS2 Gene

Sources for HIF1A-AS2 Gene

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