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Aliases for HIF1A-AS1 Gene

Subcategory (RNA class) for HIF1A-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for HIF1A-AS1 Gene

  • HIF1A Antisense RNA 1 2 3 5
  • HIF1A Antisense RNA 1 (Non-Protein Coding) 2 3
  • 5aHIF1alpha 3
  • 5aHIF-1A 3

External Ids for HIF1A-AS1 Gene

Previous GeneCards Identifiers for HIF1A-AS1 Gene

  • GC14U901317
  • GC14M062148

Summaries for HIF1A-AS1 Gene

GeneCards Summary for HIF1A-AS1 Gene

HIF1A-AS1 (HIF1A Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HIF1A-AS1 Gene

Genomics for HIF1A-AS1 Gene

Regulatory Elements for HIF1A-AS1 Gene

Enhancers for HIF1A-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14F061468 1.4 FANTOM5 ENCODE 5.2 +218.2 218180 17.7 PKNOX1 SIN3A FEZF1 BRCA1 ZNF2 YY1 ELK1 FOS SP3 REST HIF1A LOC101927780 SNAPC1 FLJ22447 HIF1A-AS1 PRKCH GC14M061347 ENSG00000247287
GH14F060777 0.2 ENCODE 4.4 +917.6 917629 1.8 JUND BHLHE40 SCRT2 FOS MAFK SIX4 HIF1A-AS1 MAD2L1P1 MNAT1
GH14F060861 0.7 Ensembl ENCODE 4.4 +833.0 833005 2.4 HDGF ESRRA PKNOX1 FEZF1 CEBPG BMI1 RAD21 GATA3 CTBP1 EED RTN1 HIF1A-AS1 ENSG00000258892 MAD2L1P1
GH14F061694 0.2 ENCODE 0.8 -2.1 -2089 7.1 HDGF PKNOX1 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 FOS SNAPC1 FLJ22447 HIF1A-AS1 GC14P061728
GH14F061701 0.2 ENCODE 0.4 -5.8 -5795 0.2 HDGF NBN HIF1A-AS1 GC14P061728
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around HIF1A-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for HIF1A-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for HIF1A-AS1 Gene

61,681,041 bp from pter
61,695,823 bp from pter
14,783 bases
Minus strand

Genomic View for HIF1A-AS1 Gene

Genes around HIF1A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HIF1A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HIF1A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HIF1A-AS1 Gene

Proteins for HIF1A-AS1 Gene

Post-translational modifications for HIF1A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HIF1A-AS1 Gene

Domains & Families for HIF1A-AS1 Gene

Gene Families for HIF1A-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HIF1A-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HIF1A-AS1 Gene

Function for HIF1A-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HIF1A-AS1 Gene

Localization for HIF1A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HIF1A-AS1 Gene

Pathways & Interactions for HIF1A-AS1 Gene

SuperPathways for HIF1A-AS1 Gene

No Data Available

Interacting Proteins for HIF1A-AS1 Gene

Gene Ontology (GO) - Biological Process for HIF1A-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for HIF1A-AS1 Gene

Transcripts for HIF1A-AS1 Gene

mRNA/cDNA for HIF1A-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HIF1A-AS1 Gene

No ASD Table

Relevant External Links for HIF1A-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HIF1A-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for HIF1A-AS1 Gene

genes like me logo Genes that share expression patterns with HIF1A-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for HIF1A-AS1 Gene

Orthologs for HIF1A-AS1 Gene

Evolution for HIF1A-AS1 Gene

Gene Tree for HIF1A-AS1 (if available)
Gene Tree for HIF1A-AS1 (if available)

No data available for Orthologs for HIF1A-AS1 Gene

Paralogs for HIF1A-AS1 Gene

No data available for Paralogs for HIF1A-AS1 Gene

Variants for HIF1A-AS1 Gene

Sequence variations from dbSNP and Humsavar for HIF1A-AS1 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs10131386 -- 61,687,717(+) gtcta(A/G)agtta intron-variant
rs10133889 -- 61,691,900(+) AGTGC(A/T)AATAT intron-variant
rs10140886 -- 61,690,424(+) gtctc(A/G)caccc intron-variant
rs10141036 -- 61,690,333(+) ttctc(A/G)gtcat intron-variant
rs10144958 -- 61,691,980(+) GTGTG(G/T)GTTTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HIF1A-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv3721n54 CNV loss 21841781
nsv564884 CNV loss 21841781

Relevant External Links for HIF1A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HIF1A-AS1 Gene

Disorders for HIF1A-AS1 Gene

Relevant External Links for HIF1A-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for HIF1A-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HIF1A-AS1 Gene

Publications for HIF1A-AS1 Gene

  1. BRG1 expression is increased in thoracic aortic aneurysms and regulates proliferation and apoptosis of vascular smooth muscle cells through the long non-coding RNA HIF1A-AS1 in vitro. (PMID: 24875884) Wang S. … Xu Z. (Eur J Cardiothorac Surg 2015) 2 3 64
  2. Characterization of novel antisense HIF-1I+ transcripts in human cancers. (PMID: 21897117) Bertozzi D. … Capranico G. (Cell Cycle 2011) 2 3 64
  3. DNA topoisomerase I inhibition by camptothecin induces escape of RNA polymerase II from promoter-proximal pause site, antisense transcription and histone acetylation at the human HIF-1alpha gene locus. (PMID: 19854946) Baranello L. … Capranico G. (Nucleic Acids Res. 2010) 3 64
  4. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3 64

Products for HIF1A-AS1 Gene

Sources for HIF1A-AS1 Gene

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