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Aliases for HIF1A-AS1 Gene

Subcategory (RNA class) for HIF1A-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HIF1A-AS1 Gene

  • HIF1A Antisense RNA 1 2 3 5
  • HIF1A Antisense RNA 1 (Non-Protein Coding) 2 3
  • 5aHIF1alpha 3
  • 5aHIF-1A 3

External Ids for HIF1A-AS1 Gene

Previous GeneCards Identifiers for HIF1A-AS1 Gene

  • GC14U901317
  • GC14M062148

Summaries for HIF1A-AS1 Gene

GeneCards Summary for HIF1A-AS1 Gene

HIF1A-AS1 (HIF1A Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HIF1A-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HIF1A-AS1 Gene

Genomics for HIF1A-AS1 Gene

Regulatory Elements for HIF1A-AS1 Gene

Enhancers for HIF1A-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14H061468 2 FANTOM5 Ensembl ENCODE dbSUPER 5.2 +218.2 218180 17 PKNOX1 ATF1 FOXA2 SIN3A FEZF1 BRCA1 ZNF2 YY1 ELK1 ZNF143 HIF1A LOC101927780 SNAPC1 FLJ22447 HIF1A-AS1 PRKCH GC14M061347 ENSG00000247287
GH14H060861 1 Ensembl ENCODE 4.4 +833.0 833005 2 ESRRA NFIB FEZF1 CEBPG CTBP1 GATA3 ZNF350 RCOR1 TCF7L2 SMARCE1 RTN1 HIF1A-AS1 ENSG00000258892 MAD2L1P1
GH14H060777 0.5 ENCODE 4.4 +917.6 917629 1 JUND FOS MAFK SIX4 HIF1A-AS1 MAD2L1P1 MNAT1
GH14H061694 1.4 ENCODE dbSUPER 0.7 -2.1 -2089 7 HDGF PKNOX1 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF766 SNAPC1 FLJ22447 HIF1A-AS1 GC14P061728
GH14H061711 1.1 ENCODE dbSUPER 0.4 -15.9 -15945 0 ELF3 PKNOX1 FOXA2 FEZF1 ZNF366 OVOL3 TSHZ1 ZEB2 PPARG NFIL3 TRMT5 FLJ22447 LOC101927780 HIF1A-AS1 GC14P061728
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HIF1A-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for HIF1A-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000274854 -1177 4401 HDGF PKNOX1 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF766

Genomic Location for HIF1A-AS1 Gene

Chromosome:
14
Start:
61,681,041 bp from pter
End:
61,695,823 bp from pter
Size:
14,783 bases
Orientation:
Minus strand

Genomic View for HIF1A-AS1 Gene

Genes around HIF1A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HIF1A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HIF1A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HIF1A-AS1 Gene

Proteins for HIF1A-AS1 Gene

Post-translational modifications for HIF1A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HIF1A-AS1 Gene

Domains & Families for HIF1A-AS1 Gene

Gene Families for HIF1A-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HIF1A-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HIF1A-AS1 Gene

Function for HIF1A-AS1 Gene

Phenotypes From GWAS Catalog for HIF1A-AS1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for HIF1A-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HIF1A-AS1 Gene

Localization for HIF1A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HIF1A-AS1 Gene

Pathways & Interactions for HIF1A-AS1 Gene

SuperPathways for HIF1A-AS1 Gene

No Data Available

Interacting Proteins for HIF1A-AS1 Gene

Gene Ontology (GO) - Biological Process for HIF1A-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HIF1A-AS1 Gene

Drugs & Compounds for HIF1A-AS1 Gene

No Compound Related Data Available

Transcripts for HIF1A-AS1 Gene

mRNA/cDNA for HIF1A-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for HIF1A-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for HIF1A-AS1 Gene

No ASD Table

Relevant External Links for HIF1A-AS1 Gene

GeneLoc Exon Structure for
HIF1A-AS1
ECgene alternative splicing isoforms for
HIF1A-AS1

Expression for HIF1A-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HIF1A-AS1 Gene

genes like me logo Genes that share expression patterns with HIF1A-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HIF1A-AS1 Gene

Orthologs for HIF1A-AS1 Gene

Evolution for HIF1A-AS1 Gene

ENSEMBL:
Gene Tree for HIF1A-AS1 (if available)
TreeFam:
Gene Tree for HIF1A-AS1 (if available)

No data available for Orthologs for HIF1A-AS1 Gene

Paralogs for HIF1A-AS1 Gene

No data available for Paralogs for HIF1A-AS1 Gene

Variants for HIF1A-AS1 Gene

Sequence variations from dbSNP and Humsavar for HIF1A-AS1 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs1000126254 -- 61,695,702(+) CTGGA(C/T)TTGCC intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs1000464543 -- 61,694,626(+) AAGGC(C/T)ATTTT intron-variant, upstream-variant-2KB
rs1000493978 -- 61,695,031(+) CTGAG(A/G)CCGAG intron-variant, upstream-variant-2KB
rs1000546294 -- 61,689,595(+) AATAC(C/T)ATGCC intron-variant
rs1001342228 -- 61,684,142(+) GTATA(C/T)TAAAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HIF1A-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv3721n54 CNV loss 21841781
nsv564884 CNV loss 21841781

Relevant External Links for HIF1A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HIF1A-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HIF1A-AS1 Gene

Disorders for HIF1A-AS1 Gene

Relevant External Links for HIF1A-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HIF1A-AS1

No disorders were found for HIF1A-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HIF1A-AS1 Gene

Publications for HIF1A-AS1 Gene

  1. BRG1 expression is increased in thoracic aortic aneurysms and regulates proliferation and apoptosis of vascular smooth muscle cells through the long non-coding RNA HIF1A-AS1 in vitro. (PMID: 24875884) Wang S … Xu Z (European journal of cardio-thoracic surgery : official journal of the European Association for Cardio-thoracic Surgery 2015) 2 3 60
  2. Characterization of novel antisense HIF-1α transcripts in human cancers. (PMID: 21897117) Bertozzi D … Capranico G (Cell cycle (Georgetown, Tex.) 2011) 2 3 60
  3. DNA topoisomerase I inhibition by camptothecin induces escape of RNA polymerase II from promoter-proximal pause site, antisense transcription and histone acetylation at the human HIF-1alpha gene locus. (PMID: 19854946) Baranello L … Capranico G (Nucleic acids research 2010) 3 60
  4. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3 60

Products for HIF1A-AS1 Gene

Sources for HIF1A-AS1 Gene

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