Free for academic non-profit institutions. Other users need a Commercial license

Aliases for HID1-AS1 Gene

Subcategory (RNA class) for HID1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HID1-AS1 Gene

  • HID1 Antisense RNA 1 2 3 5

External Ids for HID1-AS1 Gene

Summaries for HID1-AS1 Gene

GeneCards Summary for HID1-AS1 Gene

HID1-AS1 (HID1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HID1-AS1 Gene

Genomics for HID1-AS1 Gene

Regulatory Elements for HID1-AS1 Gene

Enhancers for HID1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G074511 2 FANTOM5 Ensembl ENCODE dbSUPER 18.1 -457.1 -457086 3.3 HDGF PKNOX1 ARNT SIN3A YBX1 FEZF1 ZNF2 ZNF302 CBX5 ZNF416 NAT9 NT5C NUP85 RN7SL573P CD300E HID1-AS1 CD300A MGC16275 KCTD2 CD300C
GH17G074568 1.8 FANTOM5 Ensembl ENCODE dbSUPER 9.7 -401.1 -401133 1.5 TBP ZNF473 ZSCAN4 SIN3A ZNF195 YBX1 GLI4 EGR1 FOS EGR2 CD300E NAT9 CD300C NUP85 CD300LB NT5C CD300LD MGC16275 CASKIN2 RN7SL573P
GH17G074544 1.5 Ensembl ENCODE dbSUPER 9.7 -425.1 -425148 2.7 HDGF ARID4B SIN3A ZNF48 GLIS2 ZNF143 ZNF207 DEK SP5 REST CD300C CASKIN2 HID1-AS1 SUMO2 SLC9A3R1 CD300LB
GH17G075753 1.4 ENCODE dbSUPER 9.7 +783.7 783653 1.8 HDGF MLX ARNT CREB3L1 AGO1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 UNK ENSG00000267342 NUP85 NAT9 NT5C TRIM65 MFSD11 CDK3 ENSG00000266980 CASKIN2
GH17G074448 1.2 ENCODE dbSUPER 10.1 -520.8 -520763 2.1 FOXA2 ZNF493 ZFP64 ARID4B SIN3A DMAP1 ZNF48 YY1 ZNF202 SP5 NUP85 NT5C RN7SL573P NAT9 GPRC5C GPR142 CD300E CDR2L HID1-AS1 GC17P074445
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HID1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for HID1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000098293 1911 801 FOXA2 MLX SIN3A ARID4B DMAP1 ZNF48 ZNF121 SP3 SP5 SSRP1

Genomic Location for HID1-AS1 Gene

Chromosome:
17
Start:
74,970,689 bp from pter
End:
74,975,728 bp from pter
Size:
5,040 bases
Orientation:
Plus strand

Genomic View for HID1-AS1 Gene

Genes around HID1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HID1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HID1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HID1-AS1 Gene

Proteins for HID1-AS1 Gene

Post-translational modifications for HID1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HID1-AS1 Gene

Domains & Families for HID1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HID1-AS1 Gene

Function for HID1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HID1-AS1 Gene

Localization for HID1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HID1-AS1 Gene

Pathways & Interactions for HID1-AS1 Gene

SuperPathways for HID1-AS1 Gene

No Data Available

Interacting Proteins for HID1-AS1 Gene

Gene Ontology (GO) - Biological Process for HID1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HID1-AS1 Gene

Transcripts for HID1-AS1 Gene

mRNA/cDNA for HID1-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for HID1-AS1 Gene

No ASD Table

Relevant External Links for HID1-AS1 Gene

GeneLoc Exon Structure for
HID1-AS1
ECgene alternative splicing isoforms for
HID1-AS1

Expression for HID1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HID1-AS1 Gene

genes like me logo Genes that share expression patterns with HID1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HID1-AS1 Gene

Orthologs for HID1-AS1 Gene

Evolution for HID1-AS1 Gene

ENSEMBL:
Gene Tree for HID1-AS1 (if available)
TreeFam:
Gene Tree for HID1-AS1 (if available)

No data available for Orthologs for HID1-AS1 Gene

Paralogs for HID1-AS1 Gene

No data available for Paralogs for HID1-AS1 Gene

Variants for HID1-AS1 Gene

Sequence variations from dbSNP and Humsavar for HID1-AS1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000153780 -- 74,970,377(+) TGTCA(A/C)CATGC intron-variant, upstream-variant-2KB
rs1000364735 -- 74,970,951(+) TGGTC(A/T)GATCT intron-variant
rs1000390281 -- 74,975,957(+) CTCAA(C/T)CTCCT downstream-variant-500B
rs1000392067 -- 74,971,238(+) CTTCC(C/T)CCCTG intron-variant
rs1001129054 -- 74,972,758(+) AGGAG(A/G)CAAGC intron-variant, nc-transcript-variant, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for HID1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3641252 CNV loss 21293372
nsv1056788 CNV gain 25217958
nsv457909 CNV gain 19166990
nsv470601 CNV loss 18288195
nsv518292 CNV loss 19592680
nsv576026 CNV gain 21841781
nsv833540 CNV loss 17160897

Relevant External Links for HID1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HID1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HID1-AS1 Gene

Disorders for HID1-AS1 Gene

Relevant External Links for HID1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HID1-AS1

No disorders were found for HID1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HID1-AS1 Gene

Publications for HID1-AS1 Gene

No publications were found for HID1-AS1 Gene.

Products for HID1-AS1 Gene

Sources for HID1-AS1 Gene

Content
Loading form....