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Aliases for HIC2 Gene

Aliases for HIC2 Gene

  • Hypermethylated In Cancer 2 2 3
  • HRG22 3 4 6
  • Zinc Finger And BTB Domain-Containing Protein 30 3 4
  • HIC1-Related Gene On Chromosome 22 Protein 3 4
  • KIAA1020 4 6
  • ZBTB30 3 4
  • Hic-2 3 4
  • Hic-3 3 4
  • Hypermethylated In Cancer 2 Protein 3
  • ZNF907 3

External Ids for HIC2 Gene

Previous GeneCards Identifiers for HIC2 Gene

  • GC22P018470
  • GC22P020096
  • GC22P021771
  • GC22P004831

Summaries for HIC2 Gene

GeneCards Summary for HIC2 Gene

HIC2 (Hypermethylated In Cancer 2) is a Protein Coding gene. GO annotations related to this gene include protein C-terminus binding. An important paralog of this gene is ENSG00000254553.

UniProtKB/Swiss-Prot for HIC2 Gene

  • Transcriptional repressor

Gene Wiki entry for HIC2 Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HIC2 Gene

Genomics for HIC2 Gene

Regulatory Elements for HIC2 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for HIC2 Gene

Start:
21,417,404 bp from pter
End:
21,451,463 bp from pter
Size:
34,060 bases
Orientation:
Plus strand

Genomic View for HIC2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HIC2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HIC2 Gene

Proteins for HIC2 Gene

  • Protein details for HIC2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96JB3-HIC2_HUMAN
    Recommended name:
    Hypermethylated in cancer 2 protein
    Protein Accession:
    Q96JB3
    Secondary Accessions:
    • Q504T6
    • Q96KR3
    • Q9NSM9
    • Q9UPX9

    Protein attributes for HIC2 Gene

    Size:
    615 amino acids
    Molecular mass:
    66156 Da
    Quaternary structure:
    • Self-associates. Interacts with HIC1.
    SequenceCaution:
    • Sequence=BAA82972.2; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for HIC2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for HIC2 Gene

Proteomics data for HIC2 Gene at MOPED

Post-translational modifications for HIC2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for HIC2 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for HIC2 Gene

Domains for HIC2 Gene

Gene Families for HIC2 Gene

HGNC:
  • BTBD :BTB/POZ domain containing
  • ZNF :Zinc fingers, C2H2-type

Protein Domains for HIC2 Gene

Suggested Antigen Peptide Sequences for HIC2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96JB3

UniProtKB/Swiss-Prot:

HIC2_HUMAN :
  • Q96JB3
Domain:
  • Contains 1 BTB (POZ) domain.
Family:
  • Belongs to the krueppel C2H2-type zinc-finger protein family. Hic subfamily.
Similarity:
  • Contains 5 C2H2-type zinc fingers.
genes like me logo Genes that share domains with HIC2: view

Function for HIC2 Gene

Molecular function for HIC2 Gene

UniProtKB/Swiss-Prot Function: Transcriptional repressor

Gene Ontology (GO) - Molecular Function for HIC2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding NAS 11554746
GO:0005515 protein binding --
GO:0008022 protein C-terminus binding IPI 12052894
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with HIC2: view

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for HIC2

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for HIC2 Gene

Localization for HIC2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for HIC2 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for HIC2 Gene COMPARTMENTS Subcellular localization image for HIC2 gene
Compartment Confidence
nucleus 5
plasma membrane 4
cytosol 2

Gene Ontology (GO) - Cellular Components for HIC2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 11554746
GO:0005654 nucleoplasm IDA --
GO:0005886 plasma membrane IDA --
genes like me logo Genes that share ontologies with HIC2: view

Pathways for HIC2 Gene

SuperPathways for HIC2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for HIC2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0045892 negative regulation of transcription, DNA-templated NAS 11554746
genes like me logo Genes that share ontologies with HIC2: view

No data available for Pathways by source for HIC2 Gene

Transcripts for HIC2 Gene

Unigene Clusters for HIC2 Gene

Hypermethylated in cancer 2:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for HIC2

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HIC2 Gene

No ASD Table

Relevant External Links for HIC2 Gene

GeneLoc Exon Structure for
HIC2
ECgene alternative splicing isoforms for
HIC2

Expression for HIC2 Gene

mRNA expression in normal human tissues for HIC2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for HIC2 Gene

SOURCE GeneReport for Unigene cluster for HIC2 Gene Hs.632767

mRNA Expression by UniProt/SwissProt for HIC2 Gene

Q96JB3-HIC2_HUMAN
Tissue specificity: Highest levels in cerebellum
genes like me logo Genes that share expressions with HIC2: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues for HIC2 Gene

Orthologs for HIC2 Gene

This gene was present in the common ancestor of chordates.

Orthologs for HIC2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia HIC2 35
  • 99.24 (n)
  • 99.02 (a)
HIC2 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia HIC2 35
  • 85.36 (n)
  • 84.75 (a)
HIC2 36
  • 85 (a)
OneToOne
dog
(Canis familiaris)
Mammalia HIC2 35
  • 89.89 (n)
  • 94.29 (a)
HIC2 36
  • 94 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Hic2 35
  • 85.12 (n)
  • 88.6 (a)
Hic2 16
Hic2 36
  • 88 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia HIC2 36
  • 72 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Hic2 35
  • 85.72 (n)
  • 89.58 (a)
chicken
(Gallus gallus)
Aves HIC2 35
  • 70.22 (n)
  • 71.79 (a)
HIC2 36
  • 69 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.14683 35
tropical clawed frog
(Silurana tropicalis)
Amphibia hic2 35
  • 67.41 (n)
  • 69.63 (a)
zebrafish
(Danio rerio)
Actinopterygii hic1l 36
  • 49 (a)
OneToOne
hic2 35
Species with no ortholog for HIC2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for HIC2 Gene

ENSEMBL:
Gene Tree for HIC2 (if available)
TreeFam:
Gene Tree for HIC2 (if available)

Paralogs for HIC2 Gene

Selected SIMAP similar genes for HIC2 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with HIC2: view

Variants for HIC2 Gene

Sequence variations from dbSNP and Humsavar for HIC2 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type MAF
rs12901 -- 21,451,365(-) CGTTG(A/G)TGAAT utr-variant-3-prime
rs128477 -- 21,446,155(+) GGCCA(C/T)GCCAG synonymous-codon, reference
rs131616 -- 21,421,635(-) CCTGT(G/T)CCCTC intron-variant
rs458361 -- 21,444,062(+) GTCTT(C/G)CTGCT intron-variant
rs464694 -- 21,447,200(+) GGGAA(A/C)AGGTG utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for HIC2 Gene

Variant ID Type Subtype PubMed ID
nsv436864 CNV Insertion 17901297
nsv437849 CNV Loss 16327808
esv28075 CNV Gain+Loss 19812545
nsv471490 CNV Duplication 19718026
dgv4874n71 CNV Gain 21882294
nsv914437 CNV Gain 21882294
dgv4875n71 CNV Gain 21882294
dgv4877n71 CNV Gain 21882294
nsv7350 OTHER Inversion 18451855
nsv428386 CNV Loss 18775914
nsv914448 CNV Loss 21882294
dgv4878n71 CNV Gain 21882294
nsv469545 CNV Gain 16826518
nsv471596 CNV Gain+Loss 15918152
esv2661723 CNV Deletion 23128226
nsv511071 OTHER Inversion 20534489
nsv442791 CNV CNV 18776908
dgv4879n71 CNV Loss 21882294
nsv914457 CNV Loss 21882294
nsv914458 CNV Loss 21882294
esv2660656 CNV Deletion 23128226
nsv834145 CNV Loss 17160897
nsv828963 CNV Loss 20364138
nsv828965 CNV Gain 20364138

Relevant External Links for HIC2 Gene

HapMap Linkage Disequilibrium report
HIC2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for HIC2 Gene

Disorders for HIC2 Gene

Relevant External Links for HIC2

Genetic Association Database (GAD)
HIC2
genes like me logo Genes that share disorders with HIC2: view

No data available for UniProtKB/Swiss-Prot for HIC2 Gene

Publications for HIC2 Gene

  1. Characterization of HRG22, a human homologue of the putative tumor suppressor gene HIC1. (PMID: 11554746) Deltour S. … Leprince D. (Biochem. Biophys. Res. Commun. 2001) 2 3 4 23
  2. Prediction of the coding sequences of unidentified human genes. XIV. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PMID: 10470851) Kikuno R. … Ohara O. (DNA Res. 1999) 3 4
  3. The DNA sequence of human chromosome 22. (PMID: 10591208) Dunham I. … Wright H. (Nature 1999) 3 4
  4. Construction of expression-ready cDNA clones for KIAA genes: manual curation of 330 KIAA cDNA clones. (PMID: 12168954) Nakajima D. … Nagase T. (DNA Res. 2002) 3 4
  5. A genome annotation-driven approach to cloning the human ORFeome. (PMID: 15461802) Collins J.E. … Dunham I. (Genome Biol. 2004) 3 4

Products for HIC2 Gene

Sources for HIC2 Gene

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