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Aliases & Descriptions for HIC1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases Hic-1 3 ZBTB29 1 , 2 , 3 hic-1 2
Descriptions Zinc finger and BTB domain-containing protein 29 3 hypermethylated in cancer 1 2
Search outside databases for aliases for HIC1 genePrevious GC identifers: GC17P002266 GC17P002300 GC17P001910 GC17P002166
Summaries for HIC1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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UniProtKB/Swiss-Prot: HIC1_HUMAN, Q14526 Function : Transcriptional repressor. May act as a tumor suppressor. May be involved in developmentof head, face, limbs and ventral body wall
Gene Wiki entry for HIC1
Genomic Location for HIC1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the HIC1 gene Entrez Gene cytogenetic band: 17p13.3 Ensembl cytogenetic band: 17p13.3 HGNC cytogenetic band: 17p13.3 HIC1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 17 GeneLoc Exon Structure
GeneLoc location for GC17P001906:
(about GC identifiers )
Start:
1,905,143 bp from pter
End:
1,909,731 bp from pter
Size:
4,589 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000017.9 NT_010718.15 Proteins for HIC1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: HIC1_HUMAN, Q14526 (See
protein sequence )Recommended Name: Hypermethylated in cancer 1 protein Size : 733 amino acids; 76468 Da
Subunit : Interacts with CtBP
Subcellular location : NucleusAlternative splicing : 2 isoforms : Q14526-1 Q14526-2 (Additional isoforms seem to exist)
Post-translational modifications:
Acetylated on several residues, including Lys-333. Lys-333 is deacetylated by SIRT11
Sumoylated on Lys-333 by a PIAS family member, which positively regulates transcriptionalrepression ativity and is enhanced by HDAC41
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_001091672.1 NP_006488.2 ENSEMBL proteins: ENSP00000382742 ENSP00000314080 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 2 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for HIC1: Assays for HIC1:
Protein
Domains/ Families for HIC1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q14526 ProtoNet protein and cluster: Q14526
2 Blocks protein families : IPB000210 BTB/POZ domain IPB007086 C2H2-type zinc finger signature UniProtKB/Swiss-Prot: HIC1_HUMAN, Q14526 Similarity : Belongs to the krueppel C2H2-type zinc-finger protein family. Hic subfamilySimilarity : Contains 1 BTB (POZ) domainSimilarity : Contains 5 C2H2-type zinc fingers
Gene Function for HIC1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
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Sigma-Aldrich , RNAi from
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RNAi Products ,
Clones , and
Q-PCR Products
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Millipore ,
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SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_006497 Applied Biosystems Silencer ® siRNAs for HIC1 Sigma-Aldrich siRNA and siRNA Panels for HIC1 Sigma-Aldrich shRNA Panels and shRNA for HIC1 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001098202                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001098202                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001098202  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001098202 UniProtKB/Swiss-Prot: HIC1_HUMAN, Q14526 Function : Transcriptional repressor. May act as a tumor suppressor. May be involved in developmentof head, face, limbs and ventral body wall
Genatlas biochemistry entry for HIC1 :zinc finger transcription factor gene,ubiquitously expressed in mesenchyme of thesclerotomes,lateral body wall,limb and craniofacial region,hypermethylated and underexpressed intumor,deleted in the Miller-Dieker syndrome,putatively involved in the pathogenesis as suggestedby the developmental defects observed in Hic1 deficient mice
12 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Hic1) :4 Gene Ontology (GO) molecular function terms (links to tree view) :
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Pathways & Interactions for HIC1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for HIC1 5/28 Interacting proteins for HIC1 (ENSP00000314080 3 Q14526 2 ) via UniProtKB, MINT, and/or STRING (see all 28
)About this table 4 Gene Ontology (GO) biological process terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0006350 transcription
IEA -- GO:0006355 regulation of transcription, DNA-dependent
TAS 7585125 GO:0007275 multicellular organismal development
NAS -- GO:0045786 negative regulation of cell cycle
IEA --
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Drugs & Compounds for HIC1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for HIC1 2 Novoseek chemical compound relationships for HIC1 gene
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Transcripts for HIC1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_006497 Sigma-Aldrich siRNA and siRNA Panels for HIC1 Sigma-Aldrich shRNA Panels and shRNA for HIC1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001098202 NM_006497
REFSEQ mRNAs for HIC1 gene (2 alternative transcripts): NM_001098202.1 NM_006497.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001098202 NM_006497
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001098202                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001098202                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001098202  
Additional cDNA sequence: AJ583693.1 AJ583694.1
4 DOTS entries : DT.75183578 DT.97793647 DT.121010887 DT.95155546
23 AceView cDNA sequences :BX280170 BI768757 AI478432 BF515405 BG099265 AI523046 NM_006497 BC030208 AJ583694 AJ583693 AI073751 BI822199 AA910862 AI391567 BU625650 BF057013 AJ550616 BE464410 BF940532 AW517436 AA971486 AA991668 BF194704
highest scoring ESTs for HIC1 :AI391567 AA910862 AA971486 AI073751 AI478432 AI523046 AJ550616 AJ583693 AJ583694 BC030208
Unigene Clusters for HIC1: Hypermethylated in cancer 1 Hs.72956 [show with all ESTs ] , Hs.695682 Unigene Representative Sequences: NM_006497 , AJ583693 GeneLoc Exon Structure 2 Ensembl transcripts including schematic representations : ENST00000399849
ENST00000322941
Expression for HIC1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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HIC1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for HIC1 1 / 2 / 3
7 probe-sets matching HIC1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene clusters: Hs.72956 Hs.695682 UniProtKB/Swiss-Prot: HIC1_HUMAN, Q14526 Tissue specificity : Ubiquitously expressed with highest levels found in lung, colon, prostate,thymus, testis and ovary. Expression is absent or decreased in many tumor cells
Orthologs for HIC1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for HIC1 gene from 5/6 species (see all 6
)
About this table Species with no ortholog for HIC1 ENSEMBL Gene Tree for HIC1 Paralogs for HIC1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for HIC1 gene HIC2 2 MYNN 2 ZBTB5 2
SNPs/Variants for HIC1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for HIC1 (up to first 250kb)
Disorders & Mutations for HIC1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 603825 UniProtKB/Swiss-Prot: HIC1_HUMAN, Q14526
Defects in HIC1 may be a cause of the facial dysmorphism and additional birth defects(except for lissencephaly) seen in the contiguous gene disorder Miller-Dieker syndrome (MDS), likedefective development of the nose, jaws, extremities, gastrointestinal tract, and kidney
10/15 Novoseek disease relationships for HIC1 gene (see all 15
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
allelic loss
74.41
4
15837543 (2), 9572497 (1), 11073960 (1)
medulloblastoma
70.32
13
18347096 (5), 14688019 (3), 14656076 (2), 15231840 (1) (see all 5 )
cancer
51.29
39
11747329 (3), 9572497 (2), 17079468 (2), 16386221 (2) (see all 24 )
tumors
45.49
52
11299800 (5), 16386221 (5), 9572497 (3), 17982487 (3) (see all 26 )
microsatellite instability
42.12
1
12773202 (1)
hepatitis chronic
22.81
1
10051471 (1)
breast cancer
22.55
18
11747329 (5), 9572497 (4), 15251963 (1), 16641902 (1) (see all 5 )
hepatocellular carcinoma
19.49
2
10051471 (1), 16412291 (1)
ovarian cancer
17.85
2
16386221 (1), 18757082 (1)
carcinoma squamous cell
15.98
3
11299800 (2), 11448914 (1)
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Medical News for HIC1 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for HIC1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/63 PubMed articles for HIC1 gene (see all 63
): An acetylation/deacetylation-SUMOylation switch through a phylogenetically conserved psiKXEP motif in the tumor suppressor HIC1 regulates transcriptional repression activity. (PubMed id 17283066) 1, 3, 4 Stankovic-Valentin N.... Leprince D. (2007) Characterization of HRG22, a human homologue of the putative tumor suppressor gene HIC1. (PubMed id 11554746) 1, 3, 4 Deltour S.... Leprince D. (2001) p53 activates expression of HIC-1, a new candidate tumour suppressor gene on 17p13.3. (PubMed id 7585125) 1, 3, 4 Wales M.M.... Baylin S.B. (1995) Methylation of the HIC-1 candidate tumor suppressor gene in human breast cancer. (PubMed id 9572497) 1, 3 Fujii H....Gabrielson E. (1998) Epigenetic silencing of the HIC-1 gene in human medulloblastomas. (PubMed id 14656076) 1, 3 Waha A....Pietsch T. (2003) HIC1 attenuates Wnt signaling by recruitment of TCF-4 and beta-catenin to the nuclear bodies. (PubMed id 16724116) 1, 3 Valenta T....Korinek V. (2006) A L225A substitution in the human tumour suppressor HIC1 abolishes its interaction with the corepressor CtBP. (PubMed id 16762039) 1, 3 Stankovic-Valentin N....Leprince D. (2006) Identification of the p53 family-responsive element in the promoter region of the tumor suppressor gene hypermethylated in cancer 1. (PubMed id 16301995) 1, 3 Britschgi C....Fey M.F. (2006) Detailed mapping of chromosome 17p deletions reveals HIC1 as a novel tumor suppressor gene candidate telomeric to TP53 in diffuse large B-cell lymphoma. (PubMed id 17982487) 1, 3 Stocklein H....Kalla J. (2008) Identification and functional characterization of a novel unspliced transcript variant of HIC-1 in human cancer cells exposed to adverse growth conditions. (PubMed id 17079468) 1, 3 Mondal A.M....Chattopadhyay P. (2006)
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Genome Databases showing HIC1
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Specialized Databases showing HIC1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for HIC1 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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