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Aliases for HHLA1 Gene

Aliases for HHLA1 Gene

  • HERV-H LTR-Associating 1 2 3 5
  • PLA2L 3

External Ids for HHLA1 Gene

Previous HGNC Symbols for HHLA1 Gene

  • PLA2L

Previous GeneCards Identifiers for HHLA1 Gene

  • GC08M131787
  • GC08M133108
  • GC08M132746
  • GC08M133032
  • GC08M133145
  • GC08M128391
  • GC08M133074

Summaries for HHLA1 Gene

GeneCards Summary for HHLA1 Gene

HHLA1 (HERV-H LTR-Associating 1) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HHLA1 Gene

Genomics for HHLA1 Gene

Regulatory Elements for HHLA1 Gene

Genomic Location for HHLA1 Gene

132,061,486 bp from pter
132,111,159 bp from pter
49,674 bases
Minus strand

Genomic View for HHLA1 Gene

Genes around HHLA1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HHLA1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HHLA1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HHLA1 Gene

Proteins for HHLA1 Gene

  • Protein details for HHLA1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    HERV-H LTR-associating protein 1
    Protein Accession:

    Protein attributes for HHLA1 Gene

    531 amino acids
    Molecular mass:
    58297 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for HHLA1 Gene


neXtProt entry for HHLA1 Gene

Proteomics data for HHLA1 Gene at MOPED

Post-translational modifications for HHLA1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for HHLA1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for HHLA1 Gene

Domains & Families for HHLA1 Gene

Protein Domains for HHLA1 Gene


Suggested Antigen Peptide Sequences for HHLA1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HHLA1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for HHLA1 Gene

Function for HHLA1 Gene

Molecular function for HHLA1 Gene

GENATLAS Biochemistry:
HERVH LTR-associating 1,linked to OC90 by intergenic splicing

Phenotypes for HHLA1 Gene

GenomeRNAi human phenotypes for HHLA1:
genes like me logo Genes that share phenotypes with HHLA1: view

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for HHLA1 Gene

Localization for HHLA1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for HHLA1 Gene


Subcellular locations from

Jensen Localization Image for HHLA1 Gene COMPARTMENTS Subcellular localization image for HHLA1 gene
Compartment Confidence
extracellular 4
lysosome 1
mitochondrion 1
plasma membrane 1
vacuole 1

No data available for Gene Ontology (GO) - Cellular Components for HHLA1 Gene

Pathways & Interactions for HHLA1 Gene

SuperPathways for HHLA1 Gene

No Data Available

Interacting Proteins for HHLA1 Gene

Gene Ontology (GO) - Biological Process for HHLA1 Gene


No data available for Pathways by source and SIGNOR curated interactions for HHLA1 Gene

Drugs & Compounds for HHLA1 Gene

No Compound Related Data Available

Transcripts for HHLA1 Gene

mRNA/cDNA for HHLA1 Gene

(2) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HHLA1 Gene

HERV-H LTR-associating 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HHLA1 Gene

No ASD Table

Relevant External Links for HHLA1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for HHLA1 Gene

mRNA expression in normal human tissues for HHLA1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for HHLA1 Gene

This gene is overexpressed in Testis (x8.5), Brain - Hypothalamus (x6.9), Brain - Cortex (x6.4), Brain - Substantia nigra (x5.6), Brain - Frontal Cortex (BA9) (x4.9), and Brain - Amygdala (x4.0).

Protein differential expression in normal tissues from HIPED for HHLA1 Gene

This gene is overexpressed in Serum (67.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for HHLA1 Gene

SOURCE GeneReport for Unigene cluster for HHLA1 Gene Hs.285026

genes like me logo Genes that share expression patterns with HHLA1: view

Protein tissue co-expression partners for HHLA1 Gene

Primer Products

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for HHLA1 Gene

Orthologs for HHLA1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for HHLA1 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia HHLA1 35
  • 78.66 (n)
  • 71.59 (a)
HHLA1 36
  • 62 (a)
(Mus musculus)
Mammalia Hhla1 35
  • 72.78 (n)
  • 61.62 (a)
Hhla1 16
Hhla1 36
  • 55 (a)
(Pan troglodytes)
Mammalia HHLA1 35
  • 98.93 (n)
  • 97.93 (a)
(Canis familiaris)
Mammalia HHLA1 36
  • 67 (a)
(Monodelphis domestica)
Mammalia -- 36
  • 35 (a)
-- 36
  • 58 (a)
(Gallus gallus)
Aves HHLA1 35
  • 66.48 (n)
  • 62.39 (a)
HHLA1 36
  • 40 (a)
(Anolis carolinensis)
Reptilia HHLA1 36
  • 40 (a)
(Danio rerio)
Actinopterygii HHLA1 36
  • 64 (a)
Species with no ortholog for HHLA1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for HHLA1 Gene

Gene Tree for HHLA1 (if available)
Gene Tree for HHLA1 (if available)

Paralogs for HHLA1 Gene

No data available for Paralogs for HHLA1 Gene

Variants for HHLA1 Gene

Sequence variations from dbSNP and Humsavar for HHLA1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs891764 -- 132,090,404(+) TTCTA(A/G)AGAGG intron-variant
rs893388 -- 132,090,952(-) GAAAC(C/T)CTGTC intron-variant
rs893389 -- 132,090,451(-) CATTT(A/C)CACAG intron-variant
rs715257 -- 132,102,752(-) ATTCT(A/G)GCTGG intron-variant
rs715258 -- 132,102,593(-) TCTTA(C/T)AGCAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HHLA1 Gene

Variant ID Type Subtype PubMed ID
nsv891453 CNV Gain 21882294
nsv6401 CNV Insertion 18451855
nsv507494 CNV Insertion 20534489

Variation tolerance for HHLA1 Gene

Gene Damage Index Score: 5.01; 68.44% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for HHLA1 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for HHLA1 Gene

Disorders for HHLA1 Gene

Relevant External Links for HHLA1

Genetic Association Database (GAD)
Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for HHLA1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HHLA1 Gene

Publications for HHLA1 Gene

  1. Intergenic splicing between a HERV-H endogenous retrovirus and two adjacent human genes. (PMID: 10329003) Kowalski P.E. … Mager D.L. (Genomics 1999) 2 3 4 23 67
  2. Web-based, participant-driven studies yield novel genetic associations for common traits. (PMID: 20585627) Eriksson N. … Mountain J. (PLoS Genet. 2010) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  4. A human endogenous retrovirus suppresses translation of an associated fusion transcript, PLA2L. (PMID: 9621083) Kowalski P.E. … Mager D.L. (J. Virol. 1998) 23
  5. Splicing of a human endogenous retrovirus to a novel phospholipase A2 related gene. (PMID: 8382789) Feuchter-Murthy A.E. … Mager D.L. (Nucleic Acids Res. 1993) 3

Products for HHLA1 Gene

Sources for HHLA1 Gene

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