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HHIP-AS1 Gene(RNA Gene)

HHIP Antisense RNA 1

GCID:
GC04M144642
GIFtS:
20
Genes Participants
UDN Logo

Aliases for HHIP-AS1 Gene

Subcategory (RNA class) for HHIP-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HHIP-AS1 Gene

  • HHIP Antisense RNA 1 2 3 5
  • HHIP Antisense RNA 1 (Non-Protein Coding) 2

External Ids for HHIP-AS1 Gene

Previous GeneCards Identifiers for HHIP-AS1 Gene

  • GC04M145565

Summaries for HHIP-AS1 Gene

GeneCards Summary for HHIP-AS1 Gene

HHIP-AS1 (HHIP Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HHIP-AS1 Gene

Genomics for HHIP-AS1 Gene

Products:

  1. Regulatory Element

Regulatory Elements for HHIP-AS1 Gene

Enhancers for HHIP-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04G144578 1 Ensembl ENCODE 11 +79.8 79777 6.7 ELF3 CTCF FOXA2 JUN CEBPG ZNF384 ZBTB40 RAD21 GATA3 GATA2 HHIP HHIP-AS1 KRT18P51
GH04G144708 0.8 Ensembl ENCODE 11.5 -49.0 -49011 4.6 JUND GATA2 JUN FOS ATF2 MAFK HHIP HHIP-AS1 GC04P144686 ENSG00000273621
GH04G144627 0.7 ENCODE dbSUPER 13 +33.5 33494 0.4 GATA2 JUN FOS HHIP-AS1 HHIP KRT18P51
GH04G144700 0.4 ENCODE 11.4 -40.1 -40091 1.4 ZNF280D NR2F2 HHIP-AS1 HHIP RTN3P1 GC04P144686 ENSG00000273621
GH04G144577 0.4 FANTOM5 10.8 +83.9 83854 0.1 CTCF SCRT2 HHIP HHIP-AS1 KRT18P51
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HHIP-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for HHIP-AS1 Gene

Chromosome:
4
Start:
144,642,916 bp from pter
End:
144,661,357 bp from pter
Size:
18,442 bases
Orientation:
Minus strand

Genomic View for HHIP-AS1 Gene

Genes around HHIP-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HHIP-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HHIP-AS1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for HHIP-AS1 Gene

Proteins for HHIP-AS1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for HHIP-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HHIP-AS1 Gene

Domains & Families for HHIP-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HHIP-AS1 Gene

Function for HHIP-AS1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Phenotypes for HHIP-AS1 Gene

GenomeRNAi human phenotypes for HHIP-AS1:
genes like me logo Genes that share phenotypes with HHIP-AS1: view

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HHIP-AS1 Gene

Localization for HHIP-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HHIP-AS1 Gene

Pathways & Interactions for HHIP-AS1 Gene

SuperPathways for HHIP-AS1 Gene

PathCards logo More details on SuperPathways for HHIP-AS1
No Data Available

Interacting Proteins for HHIP-AS1 Gene

Gene Ontology (GO) - Biological Process for HHIP-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HHIP-AS1 Gene

Drugs & Compounds for HHIP-AS1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for HHIP-AS1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for HHIP-AS1 Gene

(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HHIP-AS1 Gene

HHIP antisense RNA 1:
Representative Sequences:

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HHIP-AS1 Gene

No ASD Table

Relevant External Links for HHIP-AS1 Gene

GeneLoc Exon Structure for
HHIP-AS1
ECgene alternative splicing isoforms for
HHIP-AS1

Expression for HHIP-AS1 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HHIP-AS1 Gene

mRNA expression in normal human tissues for HHIP-AS1 Gene
mRNA expression by GTEx for HHIP-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for HHIP-AS1 Gene

This gene is overexpressed in Pancreas (x4.1).

SOURCE GeneReport for Unigene cluster for HHIP-AS1 Gene:

Hs.632595
genes like me logo Genes that share expression patterns with HHIP-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HHIP-AS1 Gene

Orthologs for HHIP-AS1 Gene

Evolution for HHIP-AS1 Gene

ENSEMBL:
Gene Tree for HHIP-AS1 (if available)
TreeFam:
Gene Tree for HHIP-AS1 (if available)

No data available for Orthologs for HHIP-AS1 Gene

Paralogs for HHIP-AS1 Gene

No data available for Paralogs for HHIP-AS1 Gene

Variants for HHIP-AS1 Gene

Sequence variations from dbSNP and Humsavar for HHIP-AS1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs1000473829 -- 144,645,701(+) CTCTT(A/T)CTTAC intron-variant, upstream-variant-2KB
rs1000565486 -- 144,643,627(+) GCCTC(C/T)AAGGG nc-transcript-variant
rs1000695586 -- 144,644,720(+) GAACA(G/T)TCCTC intron-variant, upstream-variant-2KB
rs1000762802 -- 144,645,933(+) AGGCT(C/G)GCGGC nc-transcript-variant, upstream-variant-2KB
rs1001220551 -- 144,644,360(+) CAGAT(A/T)AAAAA intron-variant, upstream-variant-2KB

Relevant External Links for HHIP-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HHIP-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HHIP-AS1 Gene

Disorders for HHIP-AS1 Gene

Relevant External Links for HHIP-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HHIP-AS1

No disorders were found for HHIP-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HHIP-AS1 Gene

Publications for HHIP-AS1 Gene

  1. IREB2 and GALC are associated with pulmonary artery enlargement in chronic obstructive pulmonary disease. (PMID: 25101718) Lee J.H. … Silverman E.K. (Am. J. Respir. Cell Mol. Biol. 2015) 3 64
  2. Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci. (PMID: 25429064) He M. … Qi L. (Hum. Mol. Genet. 2015) 3 64
  3. Genetic susceptibility for chronic bronchitis in chronic obstructive pulmonary disease. (PMID: 25241909) Lee J. … Silverman E.K. (Respir. Res. 2014) 3 64
  4. Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture. (PMID: 23563607) Berndt S.I. … Ingelsson E. (Nat. Genet. 2013) 3 64
  5. Genome-wide association study identifies five loci associated with lung function. (PMID: 20010834) Repapi E. … Tobin M.D. (Nat. Genet. 2010) 3 64

Products for HHIP-AS1 Gene

Sources for HHIP-AS1 Gene

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