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Aliases for HHATL-AS1 Gene

Subcategory (RNA class) for HHATL-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for HHATL-AS1 Gene

  • HHATL Antisense RNA 1 2 3 5
  • HHATL Antisense RNA 1 (Non-Protein Coding) 2

External Ids for HHATL-AS1 Gene

Previous GeneCards Identifiers for HHATL-AS1 Gene

  • GC00U933682
  • GC03P042745

Summaries for HHATL-AS1 Gene

GeneCards Summary for HHATL-AS1 Gene

HHATL-AS1 (HHATL Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for HHATL-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HHATL-AS1 Gene

Genomics for HHATL-AS1 Gene

GeneHancer (GH) Regulatory Elements for HHATL-AS1 Gene

Promoters and enhancers for HHATL-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I042700 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE dbSUPER 550.8 -0.4 -442 2.5 ELF3 RB1 ARID4B KLF17 SIN3A RAD21 DNMT3B ZNF48 ZSCAN9 RARA HHATL HHATL-AS1 NKTR ZNF662 SNRK-AS1 KLHL40 CCDC13
GH03I042722 Enhancer 0.2 dbSUPER 12 +20.8 20810 0.9 CCDC13-AS1 HHATL HHATL-AS1 CCDC13
GH03I042724 Enhancer 0.2 dbSUPER 12 +21.7 21681 0.6 HHATL HHATL-AS1 CCDC13-AS1 CCDC13
GH03I042695 Enhancer 0.5 FANTOM5 dbSUPER 0.4 -7.1 -7086 0.6 HHATL CCDC13-AS1 CCDC13 FAM198A ZNF662 KLHL40 HHATL-AS1
GH03I042689 Enhancer 0.4 dbSUPER 0.4 -10.4 -10372 4.7 PKNOX1 MCM2 CCDC13 CCDC13-AS1 HHATL NKTR HIGD1A KLHL40 HHATL-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around HHATL-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for HHATL-AS1 Gene

Genomic Locations for HHATL-AS1 Gene
chr3:42,702,653-42,706,776
(GRCh38/hg38)
Size:
4,124 bases
Orientation:
Plus strand
chr3:42,744,145-42,748,154
(GRCh37/hg19)

Genomic View for HHATL-AS1 Gene

Genes around HHATL-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HHATL-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HHATL-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for HHATL-AS1 Gene

Proteins for HHATL-AS1 Gene

Post-translational modifications for HHATL-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HHATL-AS1 Gene

Domains & Families for HHATL-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HHATL-AS1 Gene

Function for HHATL-AS1 Gene

Phenotypes From GWAS Catalog for HHATL-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HHATL-AS1 Gene

Localization for HHATL-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for HHATL-AS1 Gene

Pathways & Interactions for HHATL-AS1 Gene

SuperPathways for HHATL-AS1 Gene

No Data Available

Interacting Proteins for HHATL-AS1 Gene

Gene Ontology (GO) - Biological Process for HHATL-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HHATL-AS1 Gene

Drugs & Compounds for HHATL-AS1 Gene

No Compound Related Data Available

Transcripts for HHATL-AS1 Gene

mRNA/cDNA for HHATL-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for HHATL-AS1 Gene

No ASD Table

Relevant External Links for HHATL-AS1 Gene

GeneLoc Exon Structure for
HHATL-AS1
ECgene alternative splicing isoforms for
HHATL-AS1

Expression for HHATL-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HHATL-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for HHATL-AS1 Gene

This gene is overexpressed in Muscle - Skeletal (x11.3) and Brain - Spinal cord (cervical c-1) (x5.1).

NURSA nuclear receptor signaling pathways regulating expression of HHATL-AS1 Gene:

HHATL-AS1
genes like me logo Genes that share expression patterns with HHATL-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HHATL-AS1 Gene

Orthologs for HHATL-AS1 Gene

Evolution for HHATL-AS1 Gene

ENSEMBL:
Gene Tree for HHATL-AS1 (if available)
TreeFam:
Gene Tree for HHATL-AS1 (if available)

No data available for Orthologs for HHATL-AS1 Gene

Paralogs for HHATL-AS1 Gene

No data available for Paralogs for HHATL-AS1 Gene

Variants for HHATL-AS1 Gene

Additional Variant Information for HHATL-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HHATL-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for HHATL-AS1 Gene

Disorders for HHATL-AS1 Gene

Additional Disease Information for HHATL-AS1

No disorders were found for HHATL-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HHATL-AS1 Gene

Publications for HHATL-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for HHATL-AS1 Gene

Sources for HHATL-AS1 Gene

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