Free for academic non-profit institutions. Other users need a Commercial license

HHATL Gene(Protein Coding)

Hedgehog Acyltransferase-Like

GCID:
GC03M042734
GIFtS:
50
Genes Participants
UDN Logo

Aliases for HHATL Gene

Aliases for HHATL Gene

  • Hedgehog Acyltransferase-Like 2 3 5
  • Membrane Bound O-Acyltransferase Domain Containing 3 2 3
  • Hedgehog Acyltransferase-Like Protein 3 4
  • Glycerol Uptake/Transporter Homolog 3 4
  • C3orf3 3 4
  • GUP1 3 4
  • Protein-Cysteine N-Palmitoyltransferase HHAT-Like Protein 3
  • GUP1, Glycerol Uptake/Transporter Homolog (Yeast) 2
  • GUP1 Glycerol Uptake/Transporter Homolog 3
  • Chromosome 3 Open Reading Frame 3 2
  • KIAA1173 4
  • MSTP002 3
  • MBOAT3 3
  • OACT3 3

External Ids for HHATL Gene

Previous HGNC Symbols for HHATL Gene

  • C3orf3
  • GUP1

Previous GeneCards Identifiers for HHATL Gene

  • GC03M042714
  • GC03M042715

Summaries for HHATL Gene

GeneCards Summary for HHATL Gene

HHATL (Hedgehog Acyltransferase-Like) is a Protein Coding gene. Diseases associated with HHATL include Skin Squamous Cell Carcinoma. An important paralog of this gene is HHAT.

UniProtKB/Swiss-Prot for HHATL Gene

  • Negatively regulates N-terminal palmitoylation of SHH by HHAT/SKN.

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HHATL Gene

Genomics for HHATL Gene

Products:

  1. Regulatory Element

Regulatory Elements for HHATL Gene

Enhancers for HHATL Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G042700 1.5 Ensembl ENCODE dbSUPER 9.3 +0.6 637 2.5 PKNOX1 ZFP64 ARID4B SIN3A ZNF2 ZNF48 SLC30A9 ZNF143 KLF13 KDM4B KRBOX1 SEC22C POMGNT2 HHATL HHATL-AS1 KLHL40
GH03G042695 0.7 FANTOM5 dbSUPER 19.4 +7.3 7281 0.6 ZNF146 HHATL CCDC13-AS1 CCDC13 FAM198A ZNF662 KLHL40 HHATL-AS1
GH03G042739 1.6 FANTOM5 Ensembl ENCODE dbSUPER 7.6 -37.2 -37188 1.5 CTCF ZNF792 TAF1 ZNF2 RAD21 ZKSCAN1 YY1 TEAD3 POLR2A GATAD1 CCDC13-AS1 HHATL LINC02158
GH03G042682 1.7 FANTOM5 Ensembl ENCODE dbSUPER 7 +17.7 17710 5.0 FOXA2 ATF1 ARNT INSM2 EGR1 FOS CREM SMARCA5 ZNF362 CEBPB SEC22C HHATL LYZL4 NKTR CCDC13 CCK KRBOX1 KLHL40 RN7SL567P
GH03G042744 1.4 Ensembl ENCODE dbSUPER 7.7 -41.7 -41653 0.6 TBP PKNOX1 TBL1XR1 RB1 SIN3A ZNF2 RAD21 TCF12 GATA2 POLR3A CCDC13 LINC02158 HHATL CCDC13-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HHATL on UCSC Golden Path with GeneCards custom track

Transcription factor binding sites by QIAGEN in the HHATL gene promoter:

Genomic Location for HHATL Gene

Chromosome:
3
Start:
42,692,663 bp from pter
End:
42,702,848 bp from pter
Size:
10,186 bases
Orientation:
Minus strand

Genomic View for HHATL Gene

Genes around HHATL on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HHATL Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HHATL Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for HHATL Gene

Proteins for HHATL Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for HHATL Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9HCP6-HHATL_HUMAN
    Recommended name:
    Protein-cysteine N-palmitoyltransferase HHAT-like protein
    Protein Accession:
    Q9HCP6
    Secondary Accessions:
    • Q8TBG3
    • Q9ULP7

    Protein attributes for HHATL Gene

    Size:
    504 amino acids
    Molecular mass:
    56703 Da
    Quaternary structure:
    • Interacts with SHH.

neXtProt entry for HHATL Gene

Protein Expression for HHATL Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for HHATL Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for HHATL Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for HHATL Gene

Domains & Families for HHATL Gene

Gene Families for HHATL Gene

HGNC:

Protein Domains for HHATL Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for HHATL Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9HCP6

UniProtKB/Swiss-Prot:

HHATL_HUMAN :
  • Belongs to the membrane-bound acyltransferase family. HHAT subfamily.
Family:
  • Belongs to the membrane-bound acyltransferase family. HHAT subfamily.
genes like me logo Genes that share domains with HHATL: view

Function for HHATL Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Molecular function for HHATL Gene

UniProtKB/Swiss-Prot Function:
Negatively regulates N-terminal palmitoylation of SHH by HHAT/SKN.
genes like me logo Genes that share phenotypes with HHATL: view

Animal Model Products

CRISPR Products

miRNA for HHATL Gene

miRTarBase miRNAs that target HHATL

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for HHATL Gene

Localization for HHATL Gene

Subcellular locations from UniProtKB/Swiss-Prot for HHATL Gene

Endoplasmic reticulum membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for HHATL gene
Compartment Confidence
endoplasmic reticulum 5
plasma membrane 3

Gene Ontology (GO) - Cellular Components for HHATL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005783 endoplasmic reticulum ISS --
GO:0005789 endoplasmic reticulum membrane IEA --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
GO:0048471 perinuclear region of cytoplasm IDA 11374908
genes like me logo Genes that share ontologies with HHATL: view

Pathways & Interactions for HHATL Gene

SuperPathways for HHATL Gene

PathCards logo More details on SuperPathways for HHATL
No Data Available

Gene Ontology (GO) - Biological Process for HHATL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0060262 negative regulation of N-terminal protein palmitoylation IEA,ISS --
genes like me logo Genes that share ontologies with HHATL: view

No data available for Pathways by source and SIGNOR curated interactions for HHATL Gene

Drugs & Compounds for HHATL Gene

Products:

  1. Drug

(1) Drugs for HHATL Gene - From: Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
genes like me logo Genes that share compounds with HHATL: view

Transcripts for HHATL Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for HHATL Gene

(9) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(115) Selected AceView cDNA sequences:
(12) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HHATL Gene

Hedgehog acyltransferase-like:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HHATL Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8a · 8b · 8c ^ 9a · 9b ^ 10 ^ 11 ^ 12a · 12b ^ 13a · 13b · 13c ^ 14
SP1: - -
SP2: - - - - -
SP3: - - - -
SP4: - - - -
SP5: -
SP6:
SP7: -
SP8:

Relevant External Links for HHATL Gene

GeneLoc Exon Structure for
HHATL
ECgene alternative splicing isoforms for
HHATL

Expression for HHATL Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HHATL Gene

mRNA expression in normal human tissues for HHATL Gene
mRNA expression by BioGPS for HHATL GenemRNA expression by GTEx for HHATL Gene

mRNA differential expression in normal tissues according to GTEx for HHATL Gene

This gene is overexpressed in Heart - Left Ventricle (x12.7), Heart - Atrial Appendage (x9.7), Brain - Spinal cord (cervical c-1) (x6.8), and Muscle - Skeletal (x6.0).

Protein differential expression in normal tissues from HIPED for HHATL Gene

This gene is overexpressed in Heart (55.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for HHATL Gene



Protein tissue co-expression partners for HHATL Gene

NURSA nuclear receptor signaling pathways regulating expression of HHATL Gene:

HHATL

SOURCE GeneReport for Unigene cluster for HHATL Gene:

Hs.476041

mRNA Expression by UniProt/SwissProt for HHATL Gene:

Q9HCP6-HHATL_HUMAN
Tissue specificity: Heart-specific.

Evidence on tissue expression from TISSUES for HHATL Gene

  • Nervous system(4.8)
  • Heart(4.5)
  • Muscle(4.5)
genes like me logo Genes that share expression patterns with HHATL: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and Phenotype-based relationships between genes and organs from Gene ORGANizer for HHATL Gene

Orthologs for HHATL Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for HHATL Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia KIAA1173 34
  • 99.26 (n)
HHATL 35
  • 99 (a)
 OneToOne
dog
(Canis familiaris)
 Mammalia HHATL 34 35
  • 92.06 (n)
cow
(Bos Taurus)
 Mammalia HHATL 34 35
  • 89.68 (n)
mouse
(Mus musculus)
 Mammalia Hhatl 34 16 35
  • 87.48 (n)
rat
(Rattus norvegicus)
 Mammalia Hhatl 34
  • 87.34 (n)
oppossum
(Monodelphis domestica)
 Mammalia HHATL 35
  • 75 (a)
 OneToOne
platypus
(Ornithorhynchus anatinus)
 Mammalia HHATL 35
  • 54 (a)
 OneToOne
chicken
(Gallus gallus)
 Aves HHATL 34 35
  • 70.38 (n)
lizard
(Anolis carolinensis)
 Reptilia HHATL 35
  • 65 (a)
 OneToOne
tropical clawed frog
(Silurana tropicalis)
 Amphibia hhatl 34
  • 64.67 (n)
African clawed frog
(Xenopus laevis)
 Amphibia MGC53261 34
zebrafish
(Danio rerio)
 Actinopterygii hhatla 34 35
  • 65.46 (n)
hhatlb 35
  • 53 (a)
 OneToMany
zgc77750 34
baker's yeast
(Saccharomyces cerevisiae)
 Saccharomycetes GUP1 35
  • 17 (a)
 ManyToMany
GUP2 35
  • 15 (a)
 ManyToMany
Species where no ortholog for HHATL was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for HHATL Gene

ENSEMBL:
Gene Tree for HHATL (if available)
TreeFam:
Gene Tree for HHATL (if available)

Paralogs for HHATL Gene

Paralogs for HHATL Gene

genes like me logo Genes that share paralogs with HHATL: view

Variants for HHATL Gene

Sequence variations from dbSNP and Humsavar for HHATL Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000334203 -- 42,695,433(+) CCCCA(C/T)GGGGG intron-variant
rs1000407742 -- 42,695,738(+) TACTT(A/G)TCTAC intron-variant
rs1000455196 -- 42,703,610(+) TCTGT(A/G)CTATC upstream-variant-2KB
rs1000654399 -- 42,698,386(+) CACTA(C/G)GGTGC intron-variant
rs1000728499 -- 42,692,695(+) GGTCA(A/G)GCCCC nc-transcript-variant, downstream-variant-500B, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for HHATL Gene

Variant ID Type Subtype PubMed ID
nsv954472 CNV deletion 24416366

Variation tolerance for HHATL Gene

Residual Variation Intolerance Score: 86.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.46; 43.28% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for HHATL Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HHATL

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for HHATL Gene

Disorders for HHATL Gene

MalaCards: The human disease database

(1) MalaCards diseases for HHATL Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
skin squamous cell carcinoma
  • epidermoid skin carcinoma
- elite association - COSMIC cancer census association via MalaCards
Search HHATL in MalaCards View complete list of genes associated with diseases

Relevant External Links for HHATL

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HHATL
genes like me logo Genes that share disorders with HHATL: view

No data available for UniProtKB/Swiss-Prot and Genatlas for HHATL Gene

Publications for HHATL Gene

  1. Isolation of novel heart-specific genes using the BodyMap database. (PMID: 11374908) Soejima H. … Mukai T. (Genomics 2001) 2 3 4 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  3. Characterization of cDNA clones selected by the GeneMark analysis from size-fractionated cDNA libraries from human brain. (PMID: 10574461) Hirosawa M. … Ohara O. (DNA Res. 1999) 3 4 64
  4. Comparison of an expanded ataxia interactome with patient medical records reveals a relationship between macular degeneration and ataxia. (PMID: 21078624) Kahle J.J. … Zoghbi H.Y. (Hum. Mol. Genet. 2011) 3 64
  5. [Expression, clinical and pathological significance of KIAA1173 gene in skin squamous cell carcinoma]. (PMID: 20646595) Zhang S.Q. … Zhang X.B. (Zhonghua Yi Xue Za Zhi 2010) 3 64

Products for HHATL Gene

Sources for HHATL Gene

Content
Loading form....