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Aliases for HGH1 Gene

Aliases for HGH1 Gene

  • HGH1 Homolog (S. Cerevisiae) 2 3
  • Family With Sequence Similarity 203, Member B 2 3
  • Family With Sequence Similarity 203, Member A 2 3
  • Brain Protein 16 2 3
  • C8orf30A 3 4
  • C8orf30B 3 4
  • FAM203A 3 4
  • FAM203B 3 4
  • Chromosome 8 Open Reading Frame 30A 2
  • Chromosome 8 Open Reading Frame 30B 2
  • Brain Protein 16-Like 3
  • Protein HGH1 Homolog 3
  • Protein FAM203A 3
  • Protein FAM203B 3
  • BRP16L 3
  • BRP16 3

External Ids for HGH1 Gene

Previous HGNC Symbols for HGH1 Gene

  • C8orf30A
  • FAM203B
  • C8orf30B
  • FAM203A

Summaries for HGH1 Gene

GeneCards Summary for HGH1 Gene

HGH1 (HGH1 Homolog (S. Cerevisiae)) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HGH1 Gene

Genomics for HGH1 Gene

Genomic Location for HGH1 Gene

Start:
144,137,769 bp from pter
End:
144,140,843 bp from pter
Size:
3,075 bases
Orientation:
Plus strand

Genomic View for HGH1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HGH1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HGH1 Gene

No data available for Regulatory Elements for HGH1 Gene

Proteins for HGH1 Gene

  • Protein details for HGH1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BTY7-HGH1_HUMAN
    Recommended name:
    Protein HGH1 homolog
    Protein Accession:
    Q9BTY7
    Secondary Accessions:
    • P0CB43

    Protein attributes for HGH1 Gene

    Size:
    390 amino acids
    Molecular mass:
    42129 Da
    Quaternary structure:
    No Data Available

neXtProt entry for HGH1 Gene

Proteomics data for HGH1 Gene at MOPED

Post-translational modifications for HGH1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for HGH1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for HGH1 Gene

Domains for HGH1 Gene

Protein Domains for HGH1 Gene

Graphical View of Domain Structure for InterPro Entry

Q9BTY7

UniProtKB/Swiss-Prot:

HGH1_HUMAN :
  • Q9BTY7
Family:
  • Belongs to the HGH1 family.
genes like me logo Genes that share domains with HGH1: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for HGH1 Gene

Function for HGH1 Gene

Gene Ontology (GO) - Molecular Function for HGH1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0005488 binding --
genes like me logo Genes that share ontologies with HGH1: view

Phenotypes for HGH1 Gene

GenomeRNAi human phenotypes for HGH1:
genes like me logo Genes that share phenotypes with HGH1: view

miRNA for HGH1 Gene

miRTarBase miRNAs that target HGH1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for HGH1 Gene

Localization for HGH1 Gene

Gene Ontology (GO) - Cellular Components for HGH1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
genes like me logo Genes that share ontologies with HGH1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for HGH1 Gene

Pathways for HGH1 Gene

SuperPathways for HGH1 Gene

No Data Available

Interacting Proteins for HGH1 Gene

Gene Ontology (GO) - Biological Process for HGH1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with HGH1: view

No data available for Pathways by source for HGH1 Gene

Transcripts for HGH1 Gene

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for HGH1

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HGH1 Gene

No ASD Table

Relevant External Links for HGH1 Gene

GeneLoc Exon Structure for
HGH1
ECgene alternative splicing isoforms for
HGH1

Expression for HGH1 Gene

mRNA expression in normal human tissues for HGH1 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for HGH1 Gene

genes like me logo Genes that share expressions with HGH1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for HGH1 Gene

Orthologs for HGH1 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for HGH1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 36
  • 98 (a)
OneToMany
FAM203A 35
  • 99.11 (n)
  • 99.73 (a)
cow
(Bos Taurus)
Mammalia -- 36
  • 82 (a)
OneToMany
FAM203A 35
  • 84.13 (n)
  • 84.57 (a)
dog
(Canis familiaris)
Mammalia -- 36
  • 80 (a)
OneToMany
LOC609695 35
  • 84.17 (n)
  • 83.78 (a)
mouse
(Mus musculus)
Mammalia Fam203a 35
  • 80.83 (n)
  • 82.5 (a)
Fam203a 16
Fam203a 36
  • 77 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 54 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 61 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Fam203a 35
  • 79.11 (n)
  • 81.06 (a)
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 50 (a)
OneToMany
African clawed frog
(Xenopus laevis)
Amphibia Xl.22740 35
tropical clawed frog
(Silurana tropicalis)
Amphibia fam203a 35
  • 60.79 (n)
  • 55.78 (a)
Str.15925 35
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.3530 35
zebrafish
(Danio rerio)
Actinopterygii CABZ01049059.1 36
  • 41 (a)
ManyToMany
Dr.16793 35
fam203a 35
  • 57.65 (n)
  • 55.21 (a)
fam203a 36
  • 64 (a)
ManyToMany
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP001442 35
  • 51.04 (n)
  • 41.84 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG6073 35
  • 48.27 (n)
  • 37.69 (a)
CG6073 36
  • 35 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea Y54H5A.2 36
  • 22 (a)
OneToMany
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AAL150W 35
  • 45.79 (n)
  • 35.71 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes HGH1 35
  • 40.71 (n)
  • 34.73 (a)
HGH1 36
  • 24 (a)
OneToMany
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0F15433g 35
  • 43.59 (n)
  • 35.71 (a)
thale cress
(Arabidopsis thaliana)
eudicotyledons AT1G14300 35
  • 45.86 (n)
  • 32.28 (a)
rice
(Oryza sativa)
Liliopsida Os10g0406800 35
  • 41.89 (n)
  • 30.6 (a)
bread mold
(Neurospora crassa)
Ascomycetes NCU08324 35
  • 48.78 (n)
  • 37.29 (a)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes SPAC26F1.12c 35
  • 46.38 (n)
  • 38.59 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 41 (a)
OneToMany
Species with no ortholog for HGH1:
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for HGH1 Gene

ENSEMBL:
Gene Tree for HGH1 (if available)
TreeFam:
Gene Tree for HGH1 (if available)

Paralogs for HGH1 Gene

No data available for Paralogs for HGH1 Gene

Variants for HGH1 Gene

Sequence variations from dbSNP and Humsavar for HGH1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type MAF
rs7821441 -- 144,139,927(+) CAATC(A/C)CCAGG utr-variant-3-prime
rs7839148 -- 144,139,874(+) TGGGG(A/C)CTGGA utr-variant-3-prime
rs7843202 -- 144,140,337(+) GTGGT(A/C)GAGCC utr-variant-3-prime
rs7843606 -- 144,140,551(+) CCGTC(A/G)AGCCC utr-variant-3-prime
rs111864080 -- 144,137,661(+) TCCCC(C/G)CGCGC upstream-variant-2KB

Relevant External Links for HGH1 Gene

HapMap Linkage Disequilibrium report
HGH1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for HGH1 Gene

Disorders for HGH1 Gene

No disorders were found for HGH1 Gene.

No data available for UniProtKB/Swiss-Prot for HGH1 Gene

Publications for HGH1 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  2. DNA sequence and analysis of human chromosome 8. (PMID: 16421571) Nusbaum C. … Lander E.S. (Nature 2006) 3 4
  3. A quantitative atlas of mitotic phosphorylation. (PMID: 18669648) Dephoure N. … Gygi S.P. (Proc. Natl. Acad. Sci. U.S.A. 2008) 3 4
  4. Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach. (PMID: 19413330) Gauci S. … Mohammed S. (Anal. Chem. 2009) 3 4
  5. Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis. (PMID: 20068231) Olsen J.V. … Mann M. (Sci. Signal. 2010) 3 4

Products for HGH1 Gene

Sources for HGH1 Gene

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