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HGC6.3 Gene(Protein Coding)

Uncharacterized LOC100128124

GCID:
GC06M167975
GIFtS:
25
Genes Participants
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Aliases for HGC6.3 Gene

Aliases for HGC6.3 Gene

  • Uncharacterized LOC100128124 3
  • RP3-470B24.5 5

External Ids for HGC6.3 Gene

Previous GeneCards Identifiers for HGC6.3 Gene

  • GC06U901159
  • GC06M168120
  • GC06M168377

Summaries for HGC6.3 Gene

GeneCards Summary for HGC6.3 Gene

HGC6.3 (Uncharacterized LOC100128124) is a Protein Coding gene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HGC6.3 Gene

Genomics for HGC6.3 Gene

Products:

  1. Regulatory Element

Regulatory Elements for HGC6.3 Gene

Enhancers for HGC6.3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G167987 1.1 FANTOM5 ENCODE 11.8 -8.0 -8037 1.1 ELF3 FOXA2 SAP130 MLX ZSCAN9 HBP1 RARA ZFHX2 GATAD2A RFX1 HGC6.3 KIF25-AS1 KIF25
GH06G167931 1.2 Ensembl ENCODE 5 +46.5 46489 3.4 HNRNPUL1 FOXA2 ATF1 MLX ARID4B DMAP1 MIER2 KAT8 PBX2 HNF4A KIF25 KIF25-AS1 AFDN HGC6.3 PIR39756
GH06G167992 0.4 ENCODE 13.3 -13.7 -13728 1.3 CBX8 GATA2 KIF25-AS1 HGC6.3 KIF25
GH06G167963 0.9 ENCODE 5.7 +15.1 15057 3.2 HNRNPUL1 FOXA2 MLX ARID4B ZNF48 YY1 SLC30A9 GLIS2 PPARG KAT8 KIF25-AS1 KIF25 FRMD1 AFDN HGC6.3 PIR39756
GH06G167948 0.5 ENCODE 5.4 +30.6 30587 1.9 CEBPA HLF CEBPB CEBPG ZIC2 KIF25-AS1 KIF25 FRMD1 HGC6.3 AFDN PIR39756
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HGC6.3 on UCSC Golden Path with GeneCards custom track

Transcription factor binding sites by QIAGEN in the HGC6.3 gene promoter:

Genomic Location for HGC6.3 Gene

Chromosome:
6
Start:
167,975,924 bp from pter
End:
167,979,776 bp from pter
Size:
3,853 bases
Orientation:
Minus strand

Genomic View for HGC6.3 Gene

Genes around HGC6.3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HGC6.3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HGC6.3 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for HGC6.3 Gene

Proteins for HGC6.3 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for HGC6.3 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Q9UM08
    Recommended name:
    HGC6.3 protein
    Protein Accession:
    Q9UM08

    Protein attributes for HGC6.3 Gene

    Size:
    171 amino acids
    Molecular mass:
    17220 Da
    Quaternary structure:
    No Data Available

neXtProt entry for HGC6.3 Gene

Post-translational modifications for HGC6.3 Gene

No Post-translational modifications

Other Protein References for HGC6.3 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for HGC6.3 Gene

Domains & Families for HGC6.3 Gene

Protein Domains for HGC6.3 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for HGC6.3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HGC6.3: view

No data available for Gene Families and UniProtKB/Swiss-Prot for HGC6.3 Gene

Function for HGC6.3 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HGC6.3 Gene

Localization for HGC6.3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HGC6.3 Gene

Pathways & Interactions for HGC6.3 Gene

SuperPathways for HGC6.3 Gene

PathCards logo More details on SuperPathways for HGC6.3
No Data Available

Interacting Proteins for HGC6.3 Gene

Gene Ontology (GO) - Biological Process for HGC6.3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HGC6.3 Gene

Drugs & Compounds for HGC6.3 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for HGC6.3 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for HGC6.3 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HGC6.3 Gene

Uncharacterized LOC100128124:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HGC6.3 Gene

No ASD Table

Relevant External Links for HGC6.3 Gene

GeneLoc Exon Structure for
HGC6.3

Expression for HGC6.3 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HGC6.3 Gene

mRNA expression in normal human tissues for HGC6.3 Gene
mRNA expression by BioGPS for HGC6.3 GenemRNA expression by GTEx for HGC6.3 Gene

mRNA differential expression in normal tissues according to GTEx for HGC6.3 Gene

This gene is overexpressed in Brain - Cerebellum (x9.7), Brain - Cerebellar Hemisphere (x5.8), and Brain - Spinal cord (cervical c-1) (x4.4).

SOURCE GeneReport for Unigene cluster for HGC6.3 Gene:

Hs.448059
genes like me logo Genes that share expression patterns with HGC6.3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HGC6.3 Gene

Orthologs for HGC6.3 Gene

Evolution for HGC6.3 Gene

ENSEMBL:
Gene Tree for HGC6.3 (if available)
TreeFam:
Gene Tree for HGC6.3 (if available)

No data available for Orthologs for HGC6.3 Gene

Paralogs for HGC6.3 Gene

No data available for Paralogs for HGC6.3 Gene

Variants for HGC6.3 Gene

Sequence variations from dbSNP and Humsavar for HGC6.3 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000335111 -- 167,977,883(+) CCGGG(A/G)CCTCC upstream-variant-2KB
rs1000776362 -- 167,976,640(+) GAAGG(C/T)AGTGG reference, missense
rs1001172176 -- 167,976,820(+) CCTGG(A/G)ATTCA utr-variant-5-prime
rs1004024794 -- 167,978,699(+) TGGCC(-/G)GGGCA upstream-variant-2KB
rs1005938766 -- 167,978,563(+) AATGG(A/G)AATTG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for HGC6.3 Gene

Variant ID Type Subtype PubMed ID
dgv11062n54 CNV gain 21841781
dgv11063n54 CNV gain 21841781
dgv1853e212 CNV gain 25503493
dgv217e55 CNV gain 17911159
dgv218e55 CNV gain 17911159
dgv27e196 CNV duplication 17116639
dgv6199n100 CNV gain 25217958
dgv61n64 CNV gain 17921354
dgv791n27 CNV gain 19166990
esv1251623 CNV insertion 17803354
esv1360911 CNV deletion 17803354
esv23528 CNV gain+loss 19812545
esv2422263 CNV duplication 17116639
esv2422479 CNV duplication 17116639
esv2667680 CNV deletion 23128226
esv2733264 CNV deletion 23290073
esv2733265 CNV deletion 23290073
esv2733266 CNV deletion 23290073
esv2733267 CNV deletion 23290073
esv2759493 CNV gain 17122850
esv2761051 CNV gain 21179565
esv2763949 CNV gain 21179565
esv32818 CNV gain 17666407
esv3611678 CNV gain 21293372
esv3611679 CNV gain 21293372
esv3611680 CNV gain 21293372
nsv1030168 CNV gain 25217958
nsv442020 CNV gain 18776908
nsv509173 CNV insertion 20534489
nsv515568 CNV gain+loss 19592680
nsv5593 CNV insertion 18451855
nsv8004 CNV gain 18304495
nsv830865 CNV gain 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for HGC6.3 Gene

Disorders for HGC6.3 Gene

Relevant External Links for HGC6.3

Genetic Association Database (GAD)
HGC6.3
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HGC6.3

No disorders were found for HGC6.3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HGC6.3 Gene

Publications for HGC6.3 Gene

  1. Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid. (PMID: 23319000) Luykx J.J. … Ophoff R.A. (Mol. Psychiatry 2013) 3 64
  2. Complete DNA sequence and characterization of a 330-kb VNTR-rich region on chromosome 6q27 that is commonly deleted in ovarian cancer. (PMID: 10382971) Minaguchi T. … Nakamura Y. (DNA Res. 1999) 3 64

Products for HGC6.3 Gene

Sources for HGC6.3 Gene

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