HES4 Gene
protein-coding GIFtS : 47
GCID: GC01 M000924
hairy and enhancer of split 4 (Drosophila)
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Aliasesfor HES4 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Hairy And Enhancer Of Split 4 (Drosophila) 1 2 HHES41 BHLHb421 Transcription Factor HES-42 Class B Basic Helix-Loop-Helix Protein 422 3 BHLHB423 BHLH Factor Hes42 3 Hairy And Enhancer Of Split 43
Export aliases for HES4 gene to outside databases Previous GC identifers: GC01M000974 GC01M000206
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Summariesfor HES4 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: HES4_HUMAN, Q9HCC6 Function : Transcriptional repressor. Binds DNA on N-box motifs: 5'-CACNAG-3' (By similarity)
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Genomic Viewsfor HES4 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000001.10 NC_018912.1 NT_004350.19 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the HES4 gene promoter: CREB p53 deltaCREB MyoD Other transcription factors Search SABiosciences Chromatin IP Primers for HES4 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat HES4
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 1p36.33 Ensembl cytogenetic band: 1p36.33 HGNC cytogenetic band: 1p36 HES4 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01M000924: view genomic region
(about GC identifiers )
Start:
934,342 bp from pter
End:
935,552 bp from pter
Size:
1,211 bases
Orientation:
minus strand
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Proteinsfor HES4 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: HES4_HUMAN, Q9HCC6 (See
protein sequence )Recommended Name: Transcription factor HES-4 Size : 221 amino acids; 23523 Da
Subunit : Transcription repression requires formation of a complex with a corepressor protein of the Groucho/TLE family(By similarity)
Subcellular location : Nucleus (By similarity)
Secondary accessions : Q5SVA5Explore the universe of human proteins at neXtProt for HES4: NX_Q9HCC6 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q9HCC6 HES4 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins (2 alternative transcripts):
NP_001135939.1 NP_066993.1 ENSEMBL proteins: ENSP00000393198 ENSP00000304595 ENSP00000425085 Human Recombinant Protein Products: Gene Ontology (GO): 1 cellular component term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005634 nucleus
IEA --
HES4 for ontologies About GeneDecksing HES4 Antibody Products: Assay Products for HES4:
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Protein
Domains / Familiesfor HES4 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
HES4 for domains About GeneDecksing 3 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q9HCC6 ProtoNet protein and cluster: Q9HCC6
2 Blocks protein families : IPB001092 Basic helix-loop-helix dimerization domain bHLH IPB003650 Orange UniProtKB/Swiss-Prot: HES4_HUMAN, Q9HCC6 Domain : Has a particular type of basic domain (presence of a helix-interrupting proline) that binds to the N-box(CACNAG), rather than the canonical E-box (CANNTG) (By similarity) Domain : The C-terminal WRPW motif is a transcriptional repression domain necessary for the interaction with Groucho/TLEfamily members, transcriptional corepressors recruited to specific target DNA by Hairy-related proteins (By similarity) Similarity : Contains 1 bHLH (basic helix-loop-helix) domainSimilarity : Contains 1 Orange domain
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Functionfor HES4 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: HES4_HUMAN, Q9HCC6 Function : Transcriptional repressor. Binds DNA on N-box motifs: 5'-CACNAG-3' (By similarity)
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for HES4 (see all 2 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for HES4 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): HES4 (NM_021170 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for HES4 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat HES4
Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view) : About this table
HES4 for ontologies About GeneDecksing 1 GenomeRNAi human phenotype for HES4 :
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Pathways & Interactionsfor HES4 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for HES4 STRING Interaction
Network Preview (showing 2 interactants - click image to see more details)5/12 Interacting proteins for HES4 (Q9HCC6 3 ENSP00000393198 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 12 )About this table Gene Ontology (GO): 4 biological process terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0006351 transcription, DNA-dependent
IEA -- GO:0006355 regulation of transcription, DNA-dependent
IEA -- GO:0007399 nervous system development
IEA -- GO:0030154 cell differentiation
IEA --
HES4 for ontologies About GeneDecksing
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Drugs & Compoundsfor HES4 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for HES4 Search CenterWatch for drugs/clinical trials and news about HES4
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Transcriptsfor HES4 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for HES4 gene (2 alternative transcripts): NM_001142467.1 NM_021170.3 Unigene Cluster for HES4:
Hairy and enhancer of split 4 (Drosophila) Hs.154029 [show with all ESTs ] Unigene Representative Sequence: BM543941 4 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000428771 (uc001aci.2 uc010nyc.1 ) ENST00000304952 ENST00000481869 ENST00000484667 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for HES4 (see all 2 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for HES4 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): HES4 (NM_021170 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for HES4 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat HES4
Additional cDNA sequence: AB048791.1 BC012351.1
8 DOTS entries : DT.75101873 DT.100860764
DT.92421458 DT.97795287 DT.100830033 DT.121366989 DT.100860763 DT.95374160 24/65 AceView cDNA sequences (see all 65 ):
BU634310 BU741558 CB241590 BM727881 BU622703 BM789724 BM747954 BQ072399 BM127944 AW630809 BQ013563 BI757407 AI272242 BI602134 BM128269 BX281754 BI834315 BU633915 BM794850 AW513999 BG325949 AW148795 AW161193 AB048791 GeneLoc Exon Structure 3 Alternative Splicing Database (ASD) splice patterns (SP) for HES4 About this scheme ExUns: 1a · 1b ^ 2a · 2b ^ 3 ^ 4a · 4b SP1 :     -           SP2 :     -   -         SP3 :              
ECgene alternative splicing isoforms for HES4
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Expression for HES4 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section HES4 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: GAGAAGCGGC
About this image HES4 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See HES4 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for HES4 SOURCE GeneReport for Unigene cluster: Hs.154029 SABiosciences Custom PCR Arrays for HES4 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for HES4Browse OriGene validated miRNA SYBR primer pairs Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat HES4 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat HES4 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat HES4
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Orthologsfor HES4 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for HES4 gene from 3/12 species (see all 12 ) About this table
ENSEMBL Gene Tree for HES4 (if available)TreeFam Gene Tree for HES4 (if available)
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Paralogsfor HES4 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for HES4 gene HEYL 2 HES6 2 HELT 2 HEY2 2 HES7 2 HES3 2 HES5 2 HEY1 2 HES2 2 HES1 2 5 SIMAP similar genes for HES4 using alignment to 3 protein entries: HES4_HUMAN (see all proteins ):HES1 HEYL HES6 HES3 HEY1
HES4 for paralogs About GeneDecksing
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Genomic Variantsfor HES4 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 1 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for HES4 (934342 - 935552 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 3 variations for HES4 3 CNVs : 2294 30362 3274
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing HES4
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Disorders
/ Diseasesfor HES4 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
HES4 for disorders About GeneDecksing
OMIM gene information: 608060
OMIM disorders : --3 diseases for HES4 : About MalaCards ascariasis trichuriasis neuronitis Export disorders for HES4 gene to outside databases
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Publicationsfor HES4 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for HES4 gene integrated from 9 sources : (articles sorted by number of sources associating them with HES4) Utopia : connect your pdf to the dynamic world of online information
Hes7: a bHLH-type repressor gene regulated by Notch and expressed in the presomitic mesoderm. (PubMed id 11260262) 1 , 2 , 3 Bessho Y.... Kageyama R. (2001) The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414) 1 , 2 Gregory S.G.... Bentley D.R. (2006) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Identification and characterization of human HES2, HES3, and HES5 genes in silico. (PubMed id 15254753) 1 , 3 Katoh M. and Katoh M. (2004) The proteomic analysis of endogenous FAT10 substrates identifies p62/SQSTM1 as a substrate of FAT10ylation. (PubMed id 22797925) 1 Aichem A....Groettrup M. (2012) Effects of chronic ascariasis and trichuriasis on cyt okine production and gene expression in human blood: a cross-sectional study. (PubMed id 21666788) 1 Reina Ortiz M....Cooper P.J. (2011) An atlas of combinatorial transcriptional regulation in mouse and man. (PubMed id 20211142) 1 Ravasi T....Hayashizaki Y. (2010) Integrative genomic analyses on HES/HEY family: Notch-independent HES1, HES3 transcription in undifferentiated ES cells, and Notch-dependent HES1, HES5, HEY1, HEY2, HEYL transcription in fetal tissues, adult tissues, or cancer. (PubMed id 17611704) 1 Katoh M. and Katoh M. (2007) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002) Normalization and subtraction: two approaches to facilitate gene discovery. (PubMed id 8889548) 1 Bonaldo M.F.... Soares M.B. (1996)
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External Searches for HES4 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing HES4 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing HES4 gene
(According to HUGE )
About This Section --
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Specialized Databases showing HES4 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for HES4 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for HES4 gene: Search GeneIP for patents involving HES4 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor HES4 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for HES4 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for HES4 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for HES4 OriGene Protein Over-expression Lysate for HES4 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for HES4 OriGene 3'-UTR Clone for HES4 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for HES4 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for HES4 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for HES4 OriGene Custom Protein Services for HES4 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat HES4 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing HES4 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat HES4 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat HES4 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat HES4 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat HES4
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HES4 Proteins, Antibodies, CLIAs, and ELISAs
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Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat HES4
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Aliases for HES4
Databases for HES4
Disorders / Diseases for HES4
Domains / Families for HES4
Drugs / Compounds for HES4
Expression for HES4
Function for HES4
Genomic Views for HES4
Intellectual Property for HES4
Orthologs for HES4
Paralogs for HES4
Pathways / Interactions for HES4
Products for HES4
Proteins for HES4
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Summaries for HES4
Transcripts for HES4
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