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Aliases for HES4 Gene

Aliases for HES4 Gene

  • Hes Family BHLH Transcription Factor 4 2 3 5
  • Class B Basic Helix-Loop-Helix Protein 42 3 4
  • Hairy And Enhancer Of Split 4 3 4
  • BHLH Factor Hes4 3 4
  • BHLHb42 3 4
  • HHES4 3 4
  • Hairy And Enhancer Of Split 4 (Drosophila) 2

External Ids for HES4 Gene

Previous GeneCards Identifiers for HES4 Gene

  • GC01M000974
  • GC01M000924
  • GC01M000206

Summaries for HES4 Gene

GeneCards Summary for HES4 Gene

HES4 (Hes Family BHLH Transcription Factor 4) is a Protein Coding gene. GO annotations related to this gene include transcription factor binding and protein dimerization activity. An important paralog of this gene is HES5.

UniProtKB/Swiss-Prot for HES4 Gene

  • Transcriptional repressor. Binds DNA on N-box motifs: 5-CACNAG-3 (By similarity).

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HES4 Gene

Genomics for HES4 Gene

Regulatory Elements for HES4 Gene

Promoters for HES4 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around HES4 on UCSC Golden Path with GeneCards custom track

Genomic Location for HES4 Gene

Chromosome:
1
Start:
998,962 bp from pter
End:
1,001,285 bp from pter
Size:
2,324 bases
Orientation:
Minus strand

Genomic View for HES4 Gene

Genes around HES4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HES4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HES4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HES4 Gene

Proteins for HES4 Gene

  • Protein details for HES4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9HCC6-HES4_HUMAN
    Recommended name:
    Transcription factor HES-4
    Protein Accession:
    Q9HCC6
    Secondary Accessions:
    • Q5SVA5

    Protein attributes for HES4 Gene

    Size:
    221 amino acids
    Molecular mass:
    23523 Da
    Quaternary structure:
    • Transcription repression requires formation of a complex with a corepressor protein of the Groucho/TLE family.

neXtProt entry for HES4 Gene

Proteomics data for HES4 Gene at MOPED

Post-translational modifications for HES4 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for HES4 Gene

Antibody Products

No data available for DME Specific Peptides for HES4 Gene

Domains & Families for HES4 Gene

Gene Families for HES4 Gene

Protein Domains for HES4 Gene

Suggested Antigen Peptide Sequences for HES4 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9HCC6

UniProtKB/Swiss-Prot:

HES4_HUMAN :
  • Has a particular type of basic domain (presence of a helix-interrupting proline) that binds to the N-box (CACNAG), rather than the canonical E-box (CANNTG).
Domain:
  • Has a particular type of basic domain (presence of a helix-interrupting proline) that binds to the N-box (CACNAG), rather than the canonical E-box (CANNTG).
  • The C-terminal WRPW motif is a transcriptional repression domain necessary for the interaction with Groucho/TLE family members, transcriptional corepressors recruited to specific target DNA by Hairy-related proteins.
  • Contains 1 bHLH (basic helix-loop-helix) domain.
  • Contains 1 Orange domain.
genes like me logo Genes that share domains with HES4: view

Function for HES4 Gene

Molecular function for HES4 Gene

UniProtKB/Swiss-Prot Function:
Transcriptional repressor. Binds DNA on N-box motifs: 5-CACNAG-3 (By similarity).

Gene Ontology (GO) - Molecular Function for HES4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
genes like me logo Genes that share ontologies with HES4: view
genes like me logo Genes that share phenotypes with HES4: view

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for HES4 Gene

Localization for HES4 Gene

Subcellular locations from UniProtKB/Swiss-Prot for HES4 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for HES4 Gene COMPARTMENTS Subcellular localization image for HES4 gene
Compartment Confidence
nucleus 5

No data available for Gene Ontology (GO) - Cellular Components for HES4 Gene

Pathways & Interactions for HES4 Gene

SuperPathways for HES4 Gene

No Data Available

Gene Ontology (GO) - Biological Process for HES4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0030154 cell differentiation IEA --
genes like me logo Genes that share ontologies with HES4: view

No data available for Pathways by source and SIGNOR curated interactions for HES4 Gene

Drugs & Compounds for HES4 Gene

No Compound Related Data Available

Transcripts for HES4 Gene

Unigene Clusters for HES4 Gene

Hairy and enhancer of split 4 (Drosophila):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for HES4 Gene

ExUns: 1a · 1b ^ 2a · 2b ^ 3 ^ 4a · 4b
SP1: -
SP2: - -
SP3:

Relevant External Links for HES4 Gene

GeneLoc Exon Structure for
HES4
ECgene alternative splicing isoforms for
HES4

Expression for HES4 Gene

mRNA expression in normal human tissues for HES4 Gene

SOURCE GeneReport for Unigene cluster for HES4 Gene Hs.154029

genes like me logo Genes that share expression patterns with HES4: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for HES4 Gene

Orthologs for HES4 Gene

This gene was present in the common ancestor of animals.

Orthologs for HES4 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 36
  • 100 (a)
OneToMany
-- 36
  • 100 (a)
OneToMany
cow
(Bos Taurus)
Mammalia HES4 36
  • 77 (a)
OneToOne
dog
(Canis familiaris)
Mammalia HES4 36
  • 83 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia HES4 36
  • 52 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 24 (a)
ManyToMany
chicken
(Gallus gallus)
Aves -- 36
  • 38 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 49 (a)
ManyToMany
zebrafish
(Danio rerio)
Actinopterygii her6 36
  • 47 (a)
ManyToMany
fruit fly
(Drosophila melanogaster)
Insecta dpn 36
  • 22 (a)
ManyToMany
h 36
  • 25 (a)
ManyToMany
Side 36
  • 16 (a)
ManyToMany
Species with no ortholog for HES4:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for HES4 Gene

ENSEMBL:
Gene Tree for HES4 (if available)
TreeFam:
Gene Tree for HES4 (if available)

Paralogs for HES4 Gene

Paralogs for HES4 Gene

(4) SIMAP similar genes for HES4 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with HES4: view

Variants for HES4 Gene

Sequence variations from dbSNP and Humsavar for HES4 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs2298214 -- 999,842(-) GTGAG(G/T)GGGGC intron-variant, reference, missense
rs2710868 -- 1,002,745(-) AGAAT(C/T)GCTTG upstream-variant-2KB
rs2799058 -- 1,002,833(-) GAAAC(C/T)ACATC upstream-variant-2KB
rs2799063 -- 998,726(+) TGCGC(A/G)TGCGG downstream-variant-500B
rs3121570 -- 1,000,814(-) CGCCA(C/T)CACCG upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for HES4 Gene

Variant ID Type Subtype PubMed ID
dgv3e1 CNV Complex 17122850
essv4734 CNV CNV 17122850
nsv10161 CNV Gain+Loss 18304495
essv2408 CNV CNV 17122850
nsv517709 CNV Gain+Loss 19592680
nsv832980 CNV Gain 17160897
nsv428334 CNV Gain 18775914
dgv2n67 CNV Gain 20364138
nsv871883 CNV Gain+Loss 21882294
dgv9n71 CNV Loss 21882294
nsv871547 CNV Loss 21882294
dgv10n71 CNV Loss 21882294
dgv11n71 CNV Loss 21882294
dgv12n71 CNV Loss 21882294
dgv13n71 CNV Loss 21882294
nsv871483 CNV Loss 21882294
nsv827252 CNV Gain 20364138

Variation tolerance for HES4 Gene

Gene Damage Index Score: 7.83; 83.50% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for HES4 Gene

HapMap Linkage Disequilibrium report
HES4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for HES4 Gene

Disorders for HES4 Gene

Relevant External Links for HES4

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HES4

No disorders were found for HES4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HES4 Gene

Publications for HES4 Gene

  1. Hes7: a bHLH-type repressor gene regulated by Notch and expressed in the presomitic mesoderm. (PMID: 11260262) Bessho Y. … Kageyama R. (Genes Cells 2001) 2 3 4 67
  2. Identification and characterization of human HES2, HES3, and HES5 genes in silico. (PMID: 15254753) Katoh M. … Katoh M. (Int. J. Oncol. 2004) 2 3
  3. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3
  4. Effects of chronic ascariasis and trichuriasis on cytokine production and gene expression in human blood: a cross-sectional study. (PMID: 21666788) Reina Ortiz M. … Cooper P.J. (PLoS Negl Trop Dis 2011) 3
  5. A comprehensive resource of interacting protein regions for refining human transcription factor networks. (PMID: 20195357) Miyamoto-Sato E. … Yanagawa H. (PLoS ONE 2010) 3

Products for HES4 Gene

Sources for HES4 Gene

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