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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

HES2 Gene

protein-coding   GIFtS: 50
GCID: GC01M006406

hairy and enhancer of split 2 (Drosophila)

 Explore 6 diseases affiliated with
HES2 via our new
 Human Malady Compendium 
Biological research products
for HES2
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Hairy And Enhancer Of Split 2 (Drosophila)1 2
BHLHb401
Class B Basic Helix-Loop-Helix Protein 402 3
Transcription Factor HES-22
BHLHB403
Hairy And Enhancer Of Split 23

External Ids:    HGNC: 160051   Entrez Gene: 546262   Ensembl: ENSG000000698127   OMIM: 6099705   UniProtKB: Q9Y5433   

Export aliases for HES2 gene to outside databases

Previous GC identifers: GC01M006049 GC01M006281 GC01U900784 GC01M006183 GC01M005622


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: HES2_HUMAN, Q9Y543
Function: Transcriptional repressor of genes that require a bHLH protein for their transcription (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000001.10  NC_018912.1  NT_021937.19  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the HES2 gene promoter:
         AhR   LCR-F1   Arnt   E47   N-Myc   Max   AREB6   Pax-4a   c-Myc   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidHES2 promoter sequence
   Search SABiosciences Chromatin IP Primers for HES2

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat HES2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 1p36.31   Ensembl cytogenetic band:  1p36.31   HGNC cytogenetic band: 1p36.31

HES2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
HES2 gene location

GeneLoc information about chromosome 1         GeneLoc Exon Structure

GeneLoc location for GC01M006406:  view genomic region     (about GC identifiers)

Start:
6,472,478 bp from pter      End:
6,484,730 bp from pter
Size:
12,253 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: HES2_HUMAN, Q9Y543 (See protein sequence)
Recommended Name: Transcription factor HES-2  
Size: 173 amino acids; 18470 Da
Subunit: Transcription repression requires formation of a complex with a corepressor protein of the Groucho/TLE family
(By similarity)
Subcellular location: Nucleus (By similarity)
Secondary accessions: A2RTZ9 Q96EN4 Q9Y542
Alternative splicing: 2 isoforms:  Q9Y543-1   Q9Y543-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for HES2: NX_Q9Y543

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q9Y543

  • HES2 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_061962.2  
    ENSEMBL proteins: 
     ENSP00000367068   ENSP00000367067   ENSP00000367065   ENSP00000465248   ENSP00000465270  

    Human Recombinant Protein Products: 
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    Novus Biologicals HES2 Protein
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for HES2

    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IEA--


    HES2 for ontologies           About GeneDecksing



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    ThermoFisher Antibodies for HES2

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    Uscn ELISAs and CLIAs for HES2


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    HES2 for domains           About GeneDecksing

    3 InterPro domains/families:
     IPR018352 Orange_subgr
     IPR003650 Orange
     IPR011598 HLH_dom

    Graphical View of Domain Structure for InterPro Entry Q9Y543

    ProtoNet protein and cluster: Q9Y543

    2 Blocks protein families:
    IPB001092 Basic helix-loop-helix dimerization domain bHLH
    IPB003650 Orange


    UniProtKB/Swiss-Prot: HES2_HUMAN, Q9Y543
    Domain: Has a particular type of basic domain (presence of a helix-interrupting proline) that binds to the N-box
    (CACNAG), rather than the canonical E-box (CANNTG)
    Domain: The C-terminal WRPW motif is a transcriptional repression domain necessary for the interaction with Groucho/TLE
    family members, transcriptional corepressors recruited to specific target DNA by Hairy-related proteins (By
    similarity)
    Similarity: Contains 1 bHLH (basic helix-loop-helix) domain
    Similarity: Contains 1 Orange domain


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: HES2_HUMAN, Q9Y543
    Function: Transcriptional repressor of genes that require a bHLH protein for their transcription (By similarity)

    miRNA
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    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat HES2
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    hsa-miR-3650 hsa-miR-513b hsa-miR-2115 hsa-miR-622 hsa-miR-548q hsa-miR-335
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for HES2

    Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003690double-stranded DNA binding IEA--
    GO:0008134transcription factor binding NAS17611704
    GO:0046983protein dimerization activity IEA--


    HES2 for ontologies           About GeneDecksing


    2 GenomeRNAi human phenotypes for HES2:
     Decreased nuclei size in G2M  Increased G2M DNA content 


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for HES2

    STRING Interaction Network Preview (showing 5 interactants - click image to see 7)

    5/7 Interacting proteins for HES2 (ENSP000003670654) via UniProtKB, MINT, STRING, and/or I2D (see all 7)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    ARTNENSP000003919984STRING: ENSP00000391998
    IPO13ENSP000003614184STRING: ENSP00000361418
    PRPF38BENSP000003590424STRING: ENSP00000359042
    SIKE1ENSP000003585414STRING: ENSP00000358541
    TM2D1ENSP000003602224STRING: ENSP00000360222
    About this table

    Gene Ontology (GO): 2 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006351transcription, DNA-dependent IEA--
    GO:0045892negative regulation of transcription, DNA-dependent IEA--


    HES2 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for HES2
    Search CenterWatch for drugs/clinical trials and news about HES2 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for HES2 gene: 
    NM_019089.4  

    Unigene Cluster for HES2:

    Hairy and enhancer of split 2 (Drosophila)
    Hs.118727  [show with all ESTs]
    Unigene Representative Sequence: NM_019089
    6 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000377837(uc001amw.3) ENST00000377836 ENST00000471190 ENST00000377834(uc001amx.3)
    ENST00000487437 ENST00000489730

    miRNA
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    6 QIAGEN miScript miRNA Assays for microRNAs that regulate HES2:
    hsa-miR-3650 hsa-miR-513b hsa-miR-2115 hsa-miR-622 hsa-miR-548q hsa-miR-335
    Browse SwitchGear 3'UTR luciferase reporter plasmids
    Inhib. RNA
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    OriGene shRNA RFP: HES2
    OriGene siRNA: HES2
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    Clone
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat HES2
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat HES2

    Additional cDNA sequence: 

    AK023754.1 AK091122.1 BC012091.1 BC132698.1 BC136963.1 BC142687.1 

    4 DOTS entries:

    DT.410244  DT.70100638  DT.100745863  DT.100829461 

    24/52 AceView cDNA sequences (see all 52):

    AW516444 AK091122 C00167 BX108718 BU729177 BM998306 AA339789 BC012091 
    AA515208 AA127465 AA702466 BX396798 AA878200 BI223008 BF354381 BE904050 
    AI333927 AL602811 AI738963 BM695934 AI275093 BG470458 AK023754 CB961786 

    GeneLoc Exon Structure

    5/6 Alternative Splicing Database (ASD) splice patterns (SP) for HES2 (see all 6)    About this scheme

    ExUns: 1 ^ 2a · 2b · 2c ^ 3 ^ 4 ^ 5a · 5b · 5c · 5d ^ 6a · 6b
    SP1:        -     -                                                         
    SP2:        -     -                 -     -     -     -     -               
    SP3:                                                                        
    SP4:                                                                        
    SP5:                                -                                       


    ECgene alternative splicing isoforms for HES2

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    HES2 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: CTCGTGGGAA

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image
    See HES2 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for HES2

    SOURCE GeneReport for Unigene cluster: Hs.118727

    UniProtKB/Swiss-Prot: HES2_HUMAN, Q9Y543
    Tissue specificity: Expressed in placenta, pancreatic cancer, colon cancer with RER, cervical cancer, and in head and
    neck tumors

        SABiosciences Custom PCR Arrays for HES2
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for HES2

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for HES2 gene from 2/12 species (see all 12)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    zebrafish
    (Danio rerio)
    Actinopterygii hes2.16
    hes2.26
    hairy and enhancer of split 2.2
    36(a)
    34(a)
    1 ↔ many
    1 ↔ many
    8(49077472-49082398)
    8(49052584-49053873)
    fruit fly
    (Drosophila melanogaster)
    Insecta Side6
    similar to Deadpan
    12(a)
    1 ↔ 1
    2L(19027712-19030787)


    ENSEMBL Gene Tree for HES2 (if available)
    TreeFam Gene Tree for HES2 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for HES2 gene
    HEYL2  HES42  HES62  HELT2  HEY22  HES72  HES32  HEY12  
    HES52  HES12  
    3 SIMAP similar genes for HES2 using alignment to 3 protein entries:     HES2_HUMAN (see all proteins):
    HES1    HES6    HES5

    HES2 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/105 NCBI SNPs in HES2 are shown (see all 105    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 1 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs38384821,2
    C,--6474812(-) tgcgt-/AGGTGTG
    CATGTGCGT
    gtgtt
    1 -- int10--------
    rs613008061,2
    F,--6474879(+) ACTCGA/GAGGAG 1 -- int11Minor allele frequency- G:0.03WA 118
    rs580252581,2
    F,--6474883(+) GAAGGA/CGGCTC 1 -- int11Minor allele frequency- C:0.02WA 118
    rs1915828181,2
    --6475121(+) AAAATA/GAAAAA 1 -- int10--------
    rs1497915631,2
    --6475161(+) AGTCCC/TAGCTA 1 -- int10--------
    rs1837950841,2
    --6475230(+) CATTAC/TTGCAC 1 -- int10--------
    rs1883488431,2
    --6475261(+) AAGACC/TCTGTC 1 -- int10--------
    rs1933014181,2
    --6475323(+) GTCAAG/TATATT 1 -- ut310--------
    rs803513891,2
    --6475344(+) TTTTTA/TAAACA 1 -- ut310--------
    rs10542741,2
    C,F,A,--6475586(-) AGACGA/CCTCCT 1 -- ut31 ese310Minor allele frequency- C:0.19MN NA WA EA 678

    HapMap Linkage Disequilibrium report for HES2 (6472478 - 6484730 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 2 variations for HES2
         2 CNVs: 70912 53700

    SABiosciences Cancer Mutation PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    HES2 for disorders           About GeneDecksing

    OMIM gene information: 609970    OMIM disorders: --

    6 diseases for HES2:    About MalaCards
    cervical cancer    cervicitis    colon cancer    pancreatic cancer
    pancreatitis    neuronitis


    Export disorders for HES2 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for HES2 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with HES2)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Identification and characterization of human HES2, HES3, and HES5 genes in silico. (PubMed id 15254753)1, 2, 3, 9 Katoh M. and Katoh M. (2004)
    2. The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)1, 2 Gregory S.G.... Bentley D.R. (2006)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    5. Integrative genomic analyses on HES/HEY family: Notch-independent HES1, HES3 transcription in undifferentiated ES cells, and Notch-dependent HES1, HES5, HEY1, HEY2, HEYL transcription in fetal tissues, adult tissues, or cancer. (PubMed id 17611704)1, 9 Katoh M. and Katoh M. (2007)
    6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
    7. Structure, chromosomal locus, and promoter of mouse Hes2 gene, a homologue of Drosophila hairy and Enhancer of split. (PubMed id 9570950)1 Nishimura M....Kageyama R. (1998)
    8. Normalization and subtraction: two approaches to facilitate gene discovery. (PubMed id 8889548)1 Bonaldo M.F.... Soares M.B. (1996)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 54626 HGNC: 16005 AceView: HES2 Ensembl:ENSG00000069812 euGenes: HUgn54626
    ECgene: HES2 H-InvDB: HES2

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for HES2 Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for HES2 Genetics and Cytogenetics in Oncology and Haematology

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for HES2 gene:
    Search GeneIP for patents involving HES2

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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    In Situ Hybridization Assays from
    Advanced Cell Diagnostics
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