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HES1 Gene

protein-coding   GIFtS: 59

GC03P195336
hairy and enhancer of split 1, (Drosophila)
(Previous name: hairy homolog (Drosophila) )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
(Previous symbol: HRY)
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
FLJ20408 1, 2
HES-1 1, 2
HHL 2, 3
HL 3
HRY 2, 3, 5
Hairy-like 3
Hes1 1
bHLHb39 1, 2
Descriptions
Hairy and enhancer of split 1 2, 3
Hairy homolog 2, 3
hairy and enhancer of split 1, (Drosophila) 2
hairy homolog (Drosophila) 1
transcription factor HES-1 2
External Ids
HGNC: 51921
Entrez Gene: 32802
UniProtKB: Q144693
Ensembl: ENSG000001143157
Search outside databases for aliases for HES1 gene

Previous GC identifers: GC03P195130 GC03P195255 GC03P195174

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for HES1:
This protein belongs to the basic helix-loop-helix family of transcription factors. It is a
transcriptional repressor of genes that require a bHLH protein for their transcription. The
protein has a particular type of basic domain that contains a helix interrupting protein that
binds to the N-box rather than the canonical E-box. [provided by RefSeq]

UniProtKB/Swiss-Prot: HES1_HUMAN, Q14469
Function: Transcriptional repressor of genes that require a bHLH protein for their transcription.
May act as a negative regulator of myogenesis by inhibiting the functions of MYOD1 and ASH1. Binds
DNA on N-box motifs: 5'-CACNAG-3' with high affinity and on E-box motifs: 5'-CANNTG-3' with low
affinity (By similarity)

Gene Wiki entry for HES1

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the HES1 gene  

Entrez Gene cytogenetic band: 3q28-q29   Ensembl cytogenetic band:  3q29   HGNC cytogenetic band: 3q28-q29

HES1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 3         GeneLoc Exon Structure

GeneLoc location for GC03P195336:     (about GC identifiers)

Start:
195,336,628 bp from pter
End:
195,339,090 bp from pter
Size:
2,463 bases
Orientation:
plus strand
RefSeq DNA sequence:
NC_000003.10  NT_005612.15  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
About This Section

UniProtKB/Swiss-Prot: HES1_HUMAN, Q14469 (See protein sequence)
Recommended Name: Transcription factor HES-1  
Size: 280 amino acids; 29541 Da
Subunit: Transcription repression requires formation of a complex with a corepressor protein of the
Groucho/TLE family. Interacts (via WPRW motif) with TLE1, and more weakly with TLE2. Interacts
with HES6 (By similarity). Interacts with SIRT1
Subcellular location: Nucleus
Secondary accessions: Q6FHB2

REFSEQ proteins: NP_005515.1  

ENSEMBL proteins: 
ENSP00000232424 


Human Recombinant Proteins 
Browse Drug Discovery Central at Invitrogen for human recombinant proteins
Browse Purified and Recombinant Proteins at Millipore
Browse Human Recombinant Proteins at Sigma-Aldrich  
Browse R&D Systems for human recombinant proteins
Browse recombinant and purified proteins available from Enzo Life Sciences
Recombinant Proteins from Abcam (Hes1)
Human Recombinant Proteins from Abnova (HES1)
              OriGene Purified Recombinant Human Protein: HES1 

2 Gene Ontology (GO) cellular component terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0005634 nucleus IEA--
GO:0005737 cytoplasm IEA--
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Antibodies for HES1: 
Browse Antibodies Central at Invitrogen
Millipore Mono- and Polyclonal Antibodies for the study of HES1
Sigma-Aldrich Antibodies for HES1
R&D Systems Antibodies for HES1 (HES-1)
Antibodies from Abcam (Hes1), each with their AbpromiseSM
Monoclonal and Polyclonal Antibodies from Abnova (HES1)
Novus Biologicals Antibodies for HES1

Assays for HES1: 
Browse Invitrogen for biochemical assays
Browse Kits and Assays available from Millipore
Browse R&D Systems for biochemical assays
Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

4 InterPro domains/families:
 IPR018352 Orange_subgroup
 IPR001092 HLH_basic
 IPR003650 Orange
 IPR011598 HLH_DNA_bd


   GeneDecks  HES1 for the domains selected above  
About GeneDecksing

Graphical View of Domain Structure for InterPro Entry Q14469

ProtoNet protein and cluster: Q14469

2 Blocks protein families:
IPB001092 Basic helix-loop-helix dimerization domain bHLH
IPB003650 Orange


UniProtKB/Swiss-Prot: HES1_HUMAN, Q14469
Domain: Has a particular type of basic domain (presence of a helix-interrupting proline) that binds
to the N-box (CACNAG), rather than the canonical E-box (CANNTG)
Domain: The C-terminal WRPW motif is a transcriptional repression domain necessary for the
interaction with Groucho/TLE family members, transcriptional corepressors recruited to specific
target DNA by Hairy-related proteins (By similarity)
Domain: The bHLH, as well as cooperation between the central Orange domain and the C-terminal WRPW
motif, is required for transcriptional repressor activity (By similarity)
Similarity: Contains 1 basic helix-loop-helix (bHLH) domain
Similarity: Contains 1 Orange domain

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (HES1)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (HES1)
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005524

              Applied Biosystems Silencer® siRNAs for HES1

              Sigma-Aldrich siRNA for HES1  
                     Sigma-Aldrich shRNA Panels and shRNA for HES1  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Clones:Invitrogen Clones for HES1
Browse Clones for the Expression of Recombinant Proteins Available from Millipore
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_005524
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_005524
                                 untagged cDNA clone in CMV expression vector: NM_005524 

Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
              OriGene genome-wide validated SYBR primer pairs: NM_005524

UniProtKB/Swiss-Prot: HES1_HUMAN, Q14469
Function: Transcriptional repressor of genes that require a bHLH protein for their transcription.
May act as a negative regulator of myogenesis by inhibiting the functions of MYOD1 and ASH1. Binds
DNA on N-box motifs: 5'-CACNAG-3' with high affinity and on E-box motifs: 5'-CANNTG-3' with low
affinity (By similarity)

13 MGI mutant phenotypes (inferred from 3 alleles(MGI details for Hes1):

craniofacialdigestive/alimentaryembryogenesisendocrine/exocrine glandgrowth/size
hearing/vestibular/earlethality-prenatal/perinatalliver/biliary systemnervous systemrespiratory system
skeletontaste/olfactionvision/eye

2 Gene Ontology (GO) molecular function terms (links to tree view):

GO IDQualified GO termEvidencePubMed IDs
GO:0003677 DNA binding TAS7906273
GO:0016564 transcription repressor activity IEA--
About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section


2 Millipore Pathways for HES1
 Development Notch Signaling Pathway
 Transcription factors in neurogenesis

   GeneDecks  HES1 for the pathways selected above  
About GeneDecksing

2 Sigma-Aldrich "Your Favorite Gene" Pathways for  HES1  (Your Favorite Gene powered by Ingenuity) 
 Notch Signaling
 VDR/RXR Activation

   GeneDecks  HES1 for the pathways selected above  
About GeneDecksing

2 Kegg Pathways  (Kegg details for HES1):
 hsa04330 Notch signaling pathway
 hsa04950 Maturity onset diabetes of the young

   GeneDecks  HES1 for the pathways selected above  
About GeneDecksing
 Gene Network CentralTM Interacting Genes and Proteins Network for  HES1 


3 Interacting proteins for HES1 (ENSP000002324243) via UniProtKB, MINT, and/or STRING
InteractantInteraction Details
GeneCardExternal ID(s)
TLE1ENSP000003471023STRING (score=.837)
NEUROG3ENSP000002424623STRING (score=.8)
SIRT1ENSP000002120153STRING (score=.795)
About this table

5/22 Gene Ontology (GO) biological process terms (links to tree view) (see all 22 ):

GO IDQualified GO termEvidencePubMed IDs
GO:0000122 negative regulation of transcription from RNA polymerase II promoter IEA--
GO:0001701 in utero embryonic development IEA--
GO:0001889 liver development IEA--
GO:0006355 regulation of transcription, DNA-dependent IEA--
GO:0007155 cell adhesion IEA--
About this table
(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences
Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for HES1
4 Novoseek chemical compound relationships for HES1 gene
Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
tetrapeptide 22.55 2 10617648 (1), 12972610 (1)
12-o-tetradecanoylphorbol 13-acetate 7.23 2 15743775 (1)
oligonucleotide 0.00 2 11054669 (1)
glycogen 0.00 1 17234779 (1)
About this table


(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib.
RNA:
Invitrogen RNAi Products for gene knock-down (HES1)
Browse for Gene Knock-down Tools from Millipore
Abnova Chimera RNAi Products for Gene knock-down (HES1)
              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005524

              Sigma-Aldrich siRNA for HES1  
                     Sigma-Aldrich shRNA Panels and shRNA for HES1  
                     Explore Sigma-Aldrich super-pooled esiRNAs  

Applied Biosystems Silencer® siRNAs: 

NM_005524  

REFSEQ mRNAs for HES1 gene: 

NM_005524.2   

Applied Biosystems TaqMan ® Gene Expression Assays: 

NM_005524  

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_005524
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_005524
                                 untagged cDNA clone in CMV expression vector: NM_005524 

Additional cDNA sequence: 

AF264785.1 AK000415.1 AK300482.1 BC005178.1 BC039152.1 CR541843.1 CR609648.1 CR610974.1 
CR616000.1 

8 DOTS entries:

DT.455057  DT.97848019  DT.120913653  DT.100787901  DT.100787905  DT.95072022  DT.95285462  DT.100787904 

24/213 AceView cDNA sequences (see all 213 ):

BF063295 AA428311 F29544 CB158770 NM_005524 H85827 CA443860 AW511570 
BM091066 BU753172 AW189760 AW469992 BM820077 AW026193 BE857348 BM713155 
BM718748 BM840285 BU753369 W19562 BM761683 BM760757 AI337008 AI431412 

highest scoring ESTs for HES1:

AA083206 AA083303 AA236810 AA305552 AA430428 AA588621 AA904840 AA907024 AA910411 AA913699 

Unigene Cluster for HES1:

Hairy and enhancer of split 1, (Drosophila)
Hs.250666  [show with all ESTs]
Unigene Representative Sequence: NM_005524


GeneLoc Exon Structure

1 Ensembl transcript including schematic representation:
ENST00000232424  
(Experimental results according to 1GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

HES1 expression in normal and diseased human tissues

 Applied Biosystems TaqMan ® Gene Expression Assays for HES1

1 / 2 / 3

5 probe-sets matching HES1 gene


Affymetrix
probe-set
Array  GeneAnnot data GeneNote data GeneTide data
# genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank

37393_at2, 3 U95-A 1 1.00 1.00 1.00 1.00 L19314 0.20 1.00 0.72 1

203395_s_at2, 3 U133-A 1 1.00 1.00 -- -- NM_005524 0.60 1.00 0.82 1

203394_s_at2, 3 U133-A 1 1.00 1.00 -- -- BE973687 0.40 1.00 0.76 1

203395_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --

203394_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
About this table
Data from (Publications) and GNF BioGPS
    About these images
About these images

CGAP SAGE TAG: CACTATATTT

SOURCE GeneReport for Unigene cluster: Hs.250666

Expression variation in blood from EXPOLDB for HES1

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section


Orthologs for HES1 gene from 5/11 species (see all 11 )
Organism Gene Locus Description Human
Similarity
NCBI accessions
chimpanzee
(Pan troglodytes)
HES11   -- hairy and enhancer of split 1, (Drosophila) 99.88(n)
100(a)
460942  XM_516956.2  XP_516956.1 
cow
(Bos taurus)
HES11   -- hairy and enhancer of split 1, (Drosophila) 93.81(n)
99.64(a)
539547  NM_001034678.1  NP_001029850.1 
rat
(Rattus norvegicus)
Hes11   -- hairy and enhancer of split 1 (Drosophila) 92.62(n)
98.21(a)
29577  NM_024360.2  NP_077336.2 
mouse
(Mus musculus)
Hes11, 5 16 (27.00 cM)5
hairy and enhancer of split 1 (Drosophila)1, 5 92.02(n)1
98.21(a)1
152051  NM_008235.21  NP_032261.11 
 AK1325365  AK1335385  (see all 8)
chicken
(Gallus gallus)
HES11   -- hairy and enhancer of split 1, (Drosophila) 65.9(n)
71.65(a)
395128  NM_001005848.1  NP_001005848.1 
About this table        Species with no ortholog for HES1

ENSEMBL Gene Tree for HES1
(Paralogs according to 1HomoloGene
and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
About This Section

Paralogs for HES1 gene
HES42  HES62  HES22  HES32  

(According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section


10/23 NCBI SNPs in HES1 are shown (see all 23 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 25)
ABGenomic DataTranscription DataAllele Frequencies
SNP IDValidChr 3 posSequenceRecsAA
Chg
TypeMoreRecsAllele
freq
PopTotal
sample
More
------------
--
rs168251201,2
F195336230(+) AAAAAA/-TATGT 1 -- ng512Minor allele frequency- -:0.01MN EA 356
rs23680481,2
A,C,F,H195337655(+) ACTCTC/TGCGTT 1 -- int112Minor allele frequency- T:0.41EU EA WA NA 1186
rs22367471,2
C,F,H195337351(+) GAGATA/CATGCT 1 -- int111Minor allele frequency- C:0.11EU EA WA NA 1108
--
rs43968321,2
--195335152(+) GGGAGC/GCGGGG 1 -- ng510--------
--
rs342664981,2
--195338463(+) CCCCC-/CTCCCG 1 P/P fra10--------
--
rs44887821,2
--195335162(+) GGTTGA/GAAAAA 1 -- ng510--------
rs115418161,2
--195337176(+) GATTTG/TGGATG 1 L/W mis10--------
rs557829961,2
--195336502(+) TCCACA/GAGCGG 1 -- ng510--------
rs46070501,2
--195335134(+) AGCCCG/TAAAGT 1 -- ng510--------
--
rs115418171,2
--195338897(-) AGTGCA/GTGGTC 1 -- ut310--------
About this table

HapMap Linkage Disequilibrium images for HES1 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 139605

10/15 Novoseek disease relationships for HES1 gene (see all 15 )

Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
t-all 67.25 3 17549349 (2)
medulloblastoma 26.92 1 15520184 (1)
leukemia 23.70 1 15866157 (1)
tumors 19.90 12 18491256 (4), 19020755 (3), 18719287 (1), 11127827 (1) (see all 5)
carcinoid 16.99 6 16360401 (6)
colon cancer 6.62 1 11127827 (1)
colorectal cancer 3.38 4 19020755 (1), 17611704 (1)
cancer lung 0.00 6 9144241 (2), 17804716 (1)
melanoma 0.00 4 16916793 (2), 16715130 (1)
pancreatic cancer 0.00 3 17611704 (1)
About this table

Human Genome Epidemiology Navigator: HES1 (4 documents)

(Possibly Related Articles in Doctor's Guide)
About This Section

  --

(in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
About This Section

10/164 PubMed articles for HES1 gene (see all 164 ):
(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)
(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 3280 HGNC: 5192 AceView: HES1 Ensembl:ENSG00000114315 euGenes: HUgn3280
ECgene: HES1 H-InvDB: HES1
(According to HUGE)
About This Section

  --
(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

  --
(Available from WIS Yeda, Salk, Tufts)
About This Section

  --
(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section



Products for HES1:
 TaqMan ® Gene Expression Assays
 TaqMan ® Genotyping Assays
  Free SNP selection tool



  Invitrogen iPath Pathways  Invitrogen BLOCK-iT™ RNAi
  Invitrogen Antibodies  Invitrogen Assays
  Invitrogen Clones  Invitrogen Q-PCR Products
  Invitrogen Human Recombinant Kinases  Invitrogen Custom Antibody and Peptide Service
  Invitrogen Proteins / Assays / Screening Services  Search Invitrogen catalog for HES1-related products

 Millipore Custom Antibody & Bulk Services
 Millipore Preclinical / Clinical Development Services
 Millipore Immunoassay Services
 Millipore Target Screening & Profiling Services


 Predesigned and custom siRNAs for HES1 Antibodies for HES1
 Explore super-pooled esiRNAs Browse proteins at Sigma-Aldrich
 Lentivirus-delivered shRNAs for HES1 Browse small molecules at Sigma-Aldrich
 "Your Favorite Gene" Pathwaysfeedback


  
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 Tagged/untagged cDNA clones
 Validated SYBR primer pairs
 Purified proteins from HEK293T cells
 Western blot validated antibodies
 shRNA in GFP-retroviral vector
 Search Tocris compounds for HES1




 Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies
 Antibodies for HES1

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