Free for academic non-profit institutions. Other users need a Commercial license

HERC2P9 Gene(Pseudogene)

Hect Domain And RLD 2 Pseudogene 9

GCID:
GC15P028597
GIFtS:
19
Genes Participants
UDN Logo

Aliases for HERC2P9 Gene

Aliases for HERC2P9 Gene

  • Hect Domain And RLD 2 Pseudogene 9 2 3 5

External Ids for HERC2P9 Gene

Previous GeneCards Identifiers for HERC2P9 Gene

  • GC15P028875
  • GC15M006567
  • GC15P028835

Summaries for HERC2P9 Gene

GeneCards Summary for HERC2P9 Gene

HERC2P9 (Hect Domain And RLD 2 Pseudogene 9) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HERC2P9 Gene

Genomics for HERC2P9 Gene

Products:

  1. Regulatory Element

Regulatory Elements for HERC2P9 Gene

Enhancers for HERC2P9 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15G028984 1.3 FANTOM5 ENCODE dbSUPER 6.1 +395.8 395789 1.4 MXI1 ZBTB21 BHLHE40 SP2 ZNF398 ZIC2 ATF2 SMARCA4 POLR2A ZNF629 APBA2 HERC2P9 NSMCE3 ENSG00000259277 PIR55356
GH15G029139 1 Ensembl ENCODE 5.5 +550.7 550679 1.4 CTCF ESRRA RB1 ZNF473 RBBP5 RAD21 EED ZNF143 SMC3 NR2F6 NSMCE3 HERC2P9 GOLGA8M GC15P029119 GC15P029234
GH15G028954 1.1 ENCODE dbSUPER 4.7 +366.1 366127 2.3 HDAC1 ATF1 TBL1XR1 ZSCAN4 FEZF1 GATA2 ZSCAN5C ETV6 CREM KDM4B APBA2 HERC2P9 ENSG00000259277
GH15G028737 0.8 ENCODE 5.3 +148.3 148339 0.8 CTCF KLF1 RB1 CREB3L1 BACH1 SIN3A ZNF316 POLR2A PATZ1 SCRT2 HERC2P9 GOLGA8M WHAMMP2
GH15G028293 0.8 ENCODE 5 -294.9 -294939 2.3 HDAC1 TCF12 EGR1 EGR2 ZBTB2 NCOA1 ZNF592 MEF2D MTA1 SMARCA4 HERC2 HERC2P9 GC15M028288 RPL41P2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HERC2P9 on UCSC Golden Path with GeneCards custom track

Promoters for HERC2P9 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000074234 308 2401 CTCF MXI1 FOXA2 RB1 ZBTB40 POLR2A ZNF366 IKZF2 L3MBTL2 RNF2

Genomic Location for HERC2P9 Gene

Chromosome:
15
Start:
28,589,492 bp from pter
End:
28,685,264 bp from pter
Size:
95,773 bases
Orientation:
Plus strand

Genomic View for HERC2P9 Gene

Genes around HERC2P9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HERC2P9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HERC2P9 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for HERC2P9 Gene

Proteins for HERC2P9 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for HERC2P9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HERC2P9 Gene

Domains & Families for HERC2P9 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HERC2P9 Gene

Function for HERC2P9 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HERC2P9 Gene

Localization for HERC2P9 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HERC2P9 Gene

Pathways & Interactions for HERC2P9 Gene

SuperPathways for HERC2P9 Gene

PathCards logo More details on SuperPathways for HERC2P9
No Data Available

Interacting Proteins for HERC2P9 Gene

Gene Ontology (GO) - Biological Process for HERC2P9 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HERC2P9 Gene

Drugs & Compounds for HERC2P9 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for HERC2P9 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for HERC2P9 Gene

(1) REFSEQ mRNAs :
(1) Selected AceView cDNA sequences:
(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HERC2P9 Gene

No ASD Table

Relevant External Links for HERC2P9 Gene

GeneLoc Exon Structure for
HERC2P9
ECgene alternative splicing isoforms for
HERC2P9

Expression for HERC2P9 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HERC2P9 Gene

mRNA expression in normal human tissues for HERC2P9 Gene
mRNA expression by BioGPS for HERC2P9 GenemRNA expression by GTEx for HERC2P9 Gene

NURSA nuclear receptor signaling pathways regulating expression of HERC2P9 Gene:

HERC2P9
genes like me logo Genes that share expression patterns with HERC2P9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HERC2P9 Gene

Orthologs for HERC2P9 Gene

Evolution for HERC2P9 Gene

ENSEMBL:
Gene Tree for HERC2P9 (if available)
TreeFam:
Gene Tree for HERC2P9 (if available)

No data available for Orthologs for HERC2P9 Gene

Paralogs for HERC2P9 Gene

No data available for Paralogs for HERC2P9 Gene

Variants for HERC2P9 Gene

Sequence variations from dbSNP and Humsavar for HERC2P9 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1000038648 -- 28,672,628(+) CGTGC(C/G)TGGCT intron-variant
rs1000154321 -- 28,673,086(+) TGAGA(A/G)GTTCC intron-variant
rs1000282691 -- 28,658,567(+) TGCTG(A/G)CGAGG intron-variant
rs1000619261 -- 28,652,666(+) AGAGT(C/G)AGTGT upstream-variant-2KB
rs1000631411 -- 28,671,090(+) ATAGG(A/G)TCTTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HERC2P9 Gene

Variant ID Type Subtype PubMed ID
dgv1398e59 CNV duplication 20981092
dgv2491n100 CNV gain 25217958
dgv2492n100 CNV gain 25217958
dgv2493n100 CNV loss 25217958
dgv725e212 CNV loss 25503493
esv26019 CNV gain+loss 19812545
esv2674813 CNV deletion 23128226
esv2749506 CNV deletion 23290073
esv2760021 CNV gain+loss 17122850
esv3347385 CNV duplication 20981092
esv3386648 CNV duplication 20981092
esv3403700 CNV duplication 20981092
esv994657 CNV loss 20482838
nsv1036106 CNV gain+loss 25217958
nsv1036406 CNV gain 25217958
nsv1038377 CNV gain 25217958
nsv1128725 CNV duplication 24896259
nsv1145837 CNV duplication 26484159
nsv1148560 OTHER inversion 26484159
nsv428299 CNV loss 18775914
nsv469678 CNV gain 16826518
nsv471678 CNV loss 15918152
nsv568662 CNV gain 21841781
nsv832942 CNV gain 17160897
nsv9216 CNV gain+loss 18304495
nsv9217 CNV gain+loss 18304495
nsv9218 CNV loss 18304495
nsv976908 CNV duplication 23825009
nsv977683 CNV duplication 23825009
nsv977684 CNV duplication 23825009
nsv984137 CNV duplication 23825009

Relevant External Links for HERC2P9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HERC2P9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HERC2P9 Gene

Disorders for HERC2P9 Gene

Relevant External Links for HERC2P9

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HERC2P9

No disorders were found for HERC2P9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HERC2P9 Gene

Publications for HERC2P9 Gene

  1. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) OlA!h J. … OvA!di J. (J. Biol. Chem. 2011) 3 64
  2. The lacrimal gland transcriptome is an unusually rich source of rare and poorly characterized gene transcripts. (PMID: 15851553) Ozyildirim A.M. … Laurie G.W. (Invest. Ophthalmol. Vis. Sci. 2005) 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  4. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for HERC2P9 Gene

Sources for HERC2P9 Gene

Content
Loading form....