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HERC2P7 Gene(Pseudogene)

Hect Domain And RLD 2 Pseudogene 7

GCID:
GC15M022479
GIFtS:
20
Genes Participants
UDN Logo

Aliases for HERC2P7 Gene

Aliases for HERC2P7 Gene

  • Hect Domain And RLD 2 Pseudogene 7 2 3 5

External Ids for HERC2P7 Gene

Previous GeneCards Identifiers for HERC2P7 Gene

  • GC15U990057
  • GC15P026247
  • GC15P028573
  • GC15P023713
  • GC15M001693
  • GC15P023744
  • GC15P023754
  • GC15P023782
  • GC15P023812
  • GC15P023846
  • GC15P023876
  • GC15P023907

Summaries for HERC2P7 Gene

GeneCards Summary for HERC2P7 Gene

HERC2P7 (Hect Domain And RLD 2 Pseudogene 7) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HERC2P7 Gene

Genomics for HERC2P7 Gene

Products:

  1. Regulatory Element

Regulatory Elements for HERC2P7 Gene

Enhancers for HERC2P7 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15G022837 1.1 ENCODE 10.6 -357.0 -357025 3.8 HDGF CREB3L1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 CBX5 NIPA2 CYFIP1 HERC2P7 PIR62888
GH15G023038 1.1 ENCODE 10.5 -556.9 -556881 2.2 HDGF PKNOX1 CREB3L1 AGO1 WRNIP1 ARID4B SIN3A DMAP1 YY1 SLC30A9 HERC2P7 TUBGCP5 CYFIP1
GH15G022226 0.8 dbSUPER 11.4 +252.1 252113 6.6 GTF2F1 NFIB SUZ12 TAL1 TSC22D4 SALL2 UBTF RAD21 TCF12 NCOR1 ENSG00000247765 LOC646214 HERC2P7 LOC283683 PIR62884 MIR1268A
GH15G022830 0.4 FANTOM5 9.8 -348.6 -348635 0.3 RING1 CYFIP1 HERC2P7 PIR37016 NIPA2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HERC2P7 on UCSC Golden Path with GeneCards custom track

Genomic Location for HERC2P7 Gene

Chromosome:
15
Start:
22,479,153 bp from pter
End:
22,482,374 bp from pter
Size:
3,222 bases
Orientation:
Minus strand

Genomic View for HERC2P7 Gene

Genes around HERC2P7 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HERC2P7 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HERC2P7 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for HERC2P7 Gene

Proteins for HERC2P7 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for HERC2P7 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HERC2P7 Gene

Domains & Families for HERC2P7 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HERC2P7 Gene

Function for HERC2P7 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Molecular function for HERC2P7 Gene

GENATLAS Biochemistry:
HECT domain and RLD2,pseudogene 7

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HERC2P7 Gene

Localization for HERC2P7 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HERC2P7 Gene

Pathways & Interactions for HERC2P7 Gene

SuperPathways for HERC2P7 Gene

PathCards logo More details on SuperPathways for HERC2P7
No Data Available

Interacting Proteins for HERC2P7 Gene

Gene Ontology (GO) - Biological Process for HERC2P7 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HERC2P7 Gene

Drugs & Compounds for HERC2P7 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for HERC2P7 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for HERC2P7 Gene

(4) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HERC2P7 Gene

Hect domain and RLD 2 pseudogene 7:
Representative Sequences:

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HERC2P7 Gene

No ASD Table

Relevant External Links for HERC2P7 Gene

GeneLoc Exon Structure for
HERC2P7
ECgene alternative splicing isoforms for
HERC2P7

Expression for HERC2P7 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HERC2P7 Gene

mRNA expression in normal human tissues for HERC2P7 Gene
mRNA expression by GTEx for HERC2P7 Gene

NURSA nuclear receptor signaling pathways regulating expression of HERC2P7 Gene:

HERC2P7

SOURCE GeneReport for Unigene cluster for HERC2P7 Gene:

Hs.146211
genes like me logo Genes that share expression patterns with HERC2P7: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HERC2P7 Gene

Orthologs for HERC2P7 Gene

Evolution for HERC2P7 Gene

ENSEMBL:
Gene Tree for HERC2P7 (if available)
TreeFam:
Gene Tree for HERC2P7 (if available)

No data available for Orthologs for HERC2P7 Gene

Paralogs for HERC2P7 Gene

No data available for Paralogs for HERC2P7 Gene

Variants for HERC2P7 Gene

Sequence variations from dbSNP and Humsavar for HERC2P7 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1006279457 -- 22,482,881(-) GCTGA(-/T)TTTTT upstream-variant-2KB
rs1016272531 -- 22,482,864(-) GATGG(A/G)GTTTC upstream-variant-2KB
rs1016725120 -- 22,483,924(-) GCTAC(A/G)AAAGC upstream-variant-2KB
rs1026020128 -- 22,482,572(-) AGTTT(G/T)TTTAG upstream-variant-2KB
rs1029516346 -- 22,484,035(-) GCTGC(A/C)CTCGG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for HERC2P7 Gene

Variant ID Type Subtype PubMed ID
dgv1170n106 CNV duplication 24896259
dgv2407n100 CNV gain+loss 25217958
dgv2408n100 CNV loss 25217958
dgv2410n100 CNV gain 25217958
esv2474417 CNV loss 19546169
esv28050 CNV gain+loss 19812545
esv3335466 CNV duplication 20981092
esv3423785 CNV duplication 20981092
esv3435335 CNV duplication 20981092
esv3569265 CNV gain 25503493
esv3892626 CNV gain+loss 25118596
nsv1035969 CNV loss 25217958
nsv1040546 CNV gain 25217958
nsv1078378 CNV duplication 25765185
nsv1149605 CNV duplication 26484159
nsv433429 CNV gain 18776910
nsv433430 CNV gain 18776910
nsv511042 OTHER inversion 20534489

Relevant External Links for HERC2P7 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HERC2P7

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HERC2P7 Gene

Disorders for HERC2P7 Gene

Relevant External Links for HERC2P7

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HERC2P7

No disorders were found for HERC2P7 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HERC2P7 Gene

Publications for HERC2P7 Gene

  1. The ancestral gene for transcribed, low-copy repeats in the Prader- Willi/Angelman region encodes a large protein implicated in protein trafficking, which is deficient in mice with neuromuscular and spermiogenic abnormalities. (PMID: 9949213) Ji Y. … Nicholls R.D. (Hum. Mol. Genet. 1999) 3 64

Products for HERC2P7 Gene

Sources for HERC2P7 Gene

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