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HERC2P4 Gene(Pseudogene)

Hect Domain And RLD 2 Pseudogene 4

GCID:
GC16M032103
GIFtS:
18
Genes Participants
UDN Logo

Aliases for HERC2P4 Gene

Aliases for HERC2P4 Gene

  • Hect Domain And RLD 2 Pseudogene 4 2 3 5
  • HECT And RLD Domain Containing E3 Ubiquitin Protein Ligase 2 Pseudogene 3
  • D16F37S5 3

External Ids for HERC2P4 Gene

Previous GeneCards Identifiers for HERC2P4 Gene

  • GC16U990076
  • GC16M032073
  • GC16M032163

Summaries for HERC2P4 Gene

GeneCards Summary for HERC2P4 Gene

HERC2P4 (Hect Domain And RLD 2 Pseudogene 4) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HERC2P4 Gene

Genomics for HERC2P4 Gene

Products:

  1. Regulatory Element

Regulatory Elements for HERC2P4 Gene

Enhancers for HERC2P4 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16G031451 1.6 Ensembl ENCODE dbSUPER 5 +734.3 734251 4.7 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 FOS LOC105371171 ZNF843 CLUHP3 HERC2P4 ZNF785 ENSG00000261474 ARMC5
GH16G031470 1 ENCODE 4 +715.2 715162 4.8 HDGF MLX AGO1 ZFP64 ARID4B DMAP1 ZNF48 ZNF121 GLIS2 GATA2 LOC105371171 HERC2P4 ENSG00000280132 SLC5A2
GH16G032188 0.5 ENCODE 0.7 -0.1 -92 0.1 RB1 EGR1 NRF1 IKZF1 ZBTB40 ENSG00000260847 HERC2P4
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HERC2P4 on UCSC Golden Path with GeneCards custom track

Promoters for HERC2P4 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000085376 212 1399 RB1 EGR1 NRF1 IKZF1

Transcription factor binding sites by QIAGEN in the HERC2P4 gene promoter:

Genomic Location for HERC2P4 Gene

Chromosome:
16
Start:
32,103,245 bp from pter
End:
32,188,113 bp from pter
Size:
84,869 bases
Orientation:
Minus strand

Genomic View for HERC2P4 Gene

Genes around HERC2P4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HERC2P4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HERC2P4 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for HERC2P4 Gene

Proteins for HERC2P4 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for HERC2P4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for HERC2P4 Gene

Domains & Families for HERC2P4 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for HERC2P4 Gene

Function for HERC2P4 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Molecular function for HERC2P4 Gene

GENATLAS Biochemistry:
HECT domain and RLD2,pseudogene 4

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HERC2P4 Gene

Localization for HERC2P4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for HERC2P4 Gene

Pathways & Interactions for HERC2P4 Gene

SuperPathways for HERC2P4 Gene

PathCards logo More details on SuperPathways for HERC2P4
No Data Available

Interacting Proteins for HERC2P4 Gene

Gene Ontology (GO) - Biological Process for HERC2P4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for HERC2P4 Gene

Drugs & Compounds for HERC2P4 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for HERC2P4 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for HERC2P4 Gene

(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HERC2P4 Gene

No ASD Table

Relevant External Links for HERC2P4 Gene

GeneLoc Exon Structure for
HERC2P4
ECgene alternative splicing isoforms for
HERC2P4

Expression for HERC2P4 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HERC2P4 Gene

mRNA expression in normal human tissues for HERC2P4 Gene
mRNA expression by BioGPS for HERC2P4 GenemRNA expression by GTEx for HERC2P4 Gene

NURSA nuclear receptor signaling pathways regulating expression of HERC2P4 Gene:

HERC2P4
genes like me logo Genes that share expression patterns with HERC2P4: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HERC2P4 Gene

Orthologs for HERC2P4 Gene

Evolution for HERC2P4 Gene

ENSEMBL:
Gene Tree for HERC2P4 (if available)
TreeFam:
Gene Tree for HERC2P4 (if available)

No data available for Orthologs for HERC2P4 Gene

Paralogs for HERC2P4 Gene

No data available for Paralogs for HERC2P4 Gene

Variants for HERC2P4 Gene

Sequence variations from dbSNP and Humsavar for HERC2P4 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1000547820 -- 32,179,703(+) TATAC(A/T)TCTAT intron-variant
rs1001273813 -- 32,179,835(+) ACATG(A/G)CCAAA intron-variant
rs1001726374 -- 32,180,202(+) TCCTC(A/C)CCCAG intron-variant
rs1002894591 -- 32,183,675(+) GTTCA(C/T)TCTGT intron-variant
rs1002947029 -- 32,186,179(+) TCTTA(C/G)AGCAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HERC2P4 Gene

Variant ID Type Subtype PubMed ID
dgv1522e59 CNV duplication 20981092
dgv2834n100 CNV gain 25217958
dgv2835n100 CNV loss 25217958
dgv2836n100 CNV gain 25217958
dgv2837n100 CNV loss 25217958
dgv2838n100 CNV gain 25217958
dgv2839n100 CNV gain 25217958
dgv2840n100 CNV gain 25217958
dgv2841n100 CNV loss 25217958
dgv2842n100 CNV loss 25217958
dgv2843n100 CNV gain 25217958
dgv2844n100 CNV gain+loss 25217958
dgv2845n100 CNV gain 25217958
dgv2846n100 CNV gain+loss 25217958
dgv2847n100 CNV gain+loss 25217958
dgv2848n100 CNV gain+loss 25217958
dgv2849n100 CNV loss 25217958
dgv2850n100 CNV loss 25217958
dgv2851n100 CNV gain 25217958
dgv2852n100 CNV gain+loss 25217958
dgv2853n100 CNV loss 25217958
dgv2854n100 CNV gain 25217958
dgv2855n100 CNV loss 25217958
dgv4991n54 CNV gain 21841781
dgv50e203 CNV gain+loss 21179565
dgv814e212 CNV gain 25503493
dgv815e212 CNV loss 25503493
dgv816e212 CNV loss 25503493
dgv817e212 CNV loss 25503493
esv27116 CNV gain+loss 19812545
esv2714201 CNV deletion 23290073
esv29952 CNV gain 18421352
esv33069 CNV loss 17666407
esv3362327 CNV duplication 20981092
esv3450497 CNV duplication 20981092
esv3570542 CNV gain 25503493
esv3584708 CNV loss 24956385
esv3584926 CNV gain 24956385
esv3892833 CNV gain 25118596
esv3892844 CNV gain 25118596
esv3892846 CNV gain 25118596
nsv1059932 CNV loss 25217958
nsv1060577 CNV loss 25217958
nsv1062513 CNV gain+loss 25217958
nsv1064477 CNV loss 25217958
nsv1139654 CNV duplication 24896259
nsv1150153 CNV duplication 26484159
nsv1160389 OTHER complex 26073780
nsv428325 CNV gain+loss 18775914
nsv433444 CNV gain 18776910
nsv436841 CNV insertion 17901297
nsv442720 CNV gain+loss 18776908
nsv520222 CNV loss 19592680
nsv527583 CNV gain 19592680
nsv571834 CNV loss 21841781
nsv571835 CNV loss 21841781
nsv7281 OTHER inversion 18451855
nsv821684 CNV gain 15273396
nsv833198 CNV gain+loss 17160897
nsv9439 CNV gain+loss 18304495
nsv953811 CNV duplication 24416366
nsv984313 CNV duplication 23825009

Relevant External Links for HERC2P4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HERC2P4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for HERC2P4 Gene

Disorders for HERC2P4 Gene

Relevant External Links for HERC2P4

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HERC2P4

No disorders were found for HERC2P4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HERC2P4 Gene

Publications for HERC2P4 Gene

  1. A protein interaction framework for human mRNA degradation. (PMID: 15231747) Lehner B. … Sanderson C.M. (Genome Res. 2004) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  3. Expressed copies of the MN7 (D15F37) gene family map close to the common deletion breakpoints in the Prader-Willi/Angelman syndromes. (PMID: 9730612) Buiting K. … Horsthemke B. (Cytogenet. Cell Genet. 1998) 3 64

Products for HERC2P4 Gene

Sources for HERC2P4 Gene

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