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Aliases for HEPHL1 Gene

Aliases for HEPHL1 Gene

  • Hephaestin Like 1 2 3 5
  • EC 1.16.3.1 61
  • EC 1.1.1.94 61
  • EC 1.-.-.- 4

External Ids for HEPHL1 Gene

Previous GeneCards Identifiers for HEPHL1 Gene

  • GC00U920620
  • GC11P093394
  • GC11P093754
  • GC11P089829

Summaries for HEPHL1 Gene

GeneCards Summary for HEPHL1 Gene

HEPHL1 (Hephaestin Like 1) is a Protein Coding gene. Among its related pathways are Iron metabolism in placenta. GO annotations related to this gene include oxidoreductase activity and ferroxidase activity. An important paralog of this gene is HEPH.

UniProtKB/Swiss-Prot for HEPHL1 Gene

  • May function as a ferroxidase and may be involved in copper transport and homeostasis.

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HEPHL1 Gene

Genomics for HEPHL1 Gene

Regulatory Elements for HEPHL1 Gene

Enhancers for HEPHL1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G094007 1.1 dbSUPER 37.8 -13.0 -12986 1.5 HDGF HNRNPUL1 PKNOX1 CREB3L1 MLX AGO1 ARID4B SIN3A DMAP1 YY1 HEPHL1 MED17 MRE11 SNORA1 PIR57850 GC11P094003
GH11G094009 1.1 ENCODE dbSUPER 37.8 -10.3 -10277 2.6 ELF3 FOXA2 MLX ARID4B DMAP1 THRB ZNF48 RARA MIXL1 HMG20B HEPHL1 PIR57850 GC11P094003
GH11G094127 2 FANTOM5 Ensembl ENCODE dbSUPER 17.5 +111.3 111273 10.4 HDGF PKNOX1 CREB3L1 ARID4B SIN3A FEZF1 DMAP1 YY1 ZNF143 ZNF207 PANX1 HEPHL1 MED17 FUT4 PIR47114 GC11P094183
GH11G094020 0.9 ENCODE dbSUPER 38.2 +0.3 265 2.9 RFX1 ZBTB21 FEZF1 ZNF398 ZNF843 ZNF518A ATF2 ZNF366 SCRT2 HNF4A HEPHL1 GC11M094026
GH11G093972 0.9 ENCODE 34 -47.4 -47427 1.9 ATF1 ARNT TCF12 ZNF766 GATA2 CBX5 NCOA1 ZNF592 SMARCA4 PBX2 HEPHL1 GC11M093931 ENSG00000255995
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HEPHL1 on UCSC Golden Path with GeneCards custom track

Genomic Location for HEPHL1 Gene

Chromosome:
11
Start:
94,021,212 bp from pter
End:
94,114,208 bp from pter
Size:
92,997 bases
Orientation:
Plus strand

Genomic View for HEPHL1 Gene

Genes around HEPHL1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HEPHL1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HEPHL1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HEPHL1 Gene

Proteins for HEPHL1 Gene

  • Protein details for HEPHL1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6MZM0-HPHL1_HUMAN
    Recommended name:
    Hephaestin-like protein 1
    Protein Accession:
    Q6MZM0
    Secondary Accessions:
    • Q3C1W7

    Protein attributes for HEPHL1 Gene

    Size:
    1159 amino acids
    Molecular mass:
    131603 Da
    Cofactor:
    Name=Cu cation; Xref=ChEBI:CHEBI:23378;
    Quaternary structure:
    No Data Available

neXtProt entry for HEPHL1 Gene

Selected DME Specific Peptides for HEPHL1 Gene

Q6MZM0:
  • HLGILGP
  • YKKVVYR
  • TFLGLSG

Post-translational modifications for HEPHL1 Gene

  • Glycosylation at isoforms=161, isoforms=236, isoforms=407, isoforms=589, isoforms=772, and posLast=935935
  • Modification sites at PhosphoSitePlus

Other Protein References for HEPHL1 Gene

ENSEMBL proteins:
REFSEQ proteins:

Domains & Families for HEPHL1 Gene

Suggested Antigen Peptide Sequences for HEPHL1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q6MZM0

UniProtKB/Swiss-Prot:

HPHL1_HUMAN :
  • Belongs to the multicopper oxidase family.
Family:
  • Belongs to the multicopper oxidase family.
genes like me logo Genes that share domains with HEPHL1: view

No data available for Gene Families for HEPHL1 Gene

Function for HEPHL1 Gene

Molecular function for HEPHL1 Gene

UniProtKB/Swiss-Prot Function:
May function as a ferroxidase and may be involved in copper transport and homeostasis.

Enzyme Numbers (IUBMB) for HEPHL1 Gene

Gene Ontology (GO) - Molecular Function for HEPHL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004322 ferroxidase activity IDA 20685892
GO:0005507 copper ion binding IEA --
GO:0016491 oxidoreductase activity IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with HEPHL1: view

Phenotypes for HEPHL1 Gene

MGI mutant phenotypes for HEPHL1:
inferred from 2 alleles
genes like me logo Genes that share phenotypes with HEPHL1: view

Animal Models for HEPHL1 Gene

MGI Knock Outs for HEPHL1:

Animal Model Products

  • Taconic Biosciences Mouse Models for HEPHL1

CRISPR Products

Inhibitory RNA Products

No data available for Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for HEPHL1 Gene

Localization for HEPHL1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for HEPHL1 Gene

Membrane; Single-pass type I membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for HEPHL1 gene
Compartment Confidence
plasma membrane 2
endoplasmic reticulum 2
golgi apparatus 2
peroxisome 1

Gene Ontology (GO) - Cellular Components for HEPHL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with HEPHL1: view

Pathways & Interactions for HEPHL1 Gene

SuperPathways for HEPHL1 Gene

SuperPathway Contained pathways
1 Iron metabolism in placenta
genes like me logo Genes that share pathways with HEPHL1: view

Pathways by source for HEPHL1 Gene

1 BioSystems pathway for HEPHL1 Gene

Gene Ontology (GO) - Biological Process for HEPHL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006810 transport IEA --
GO:0006811 ion transport IEA --
GO:0006825 copper ion transport IEA --
GO:0055114 oxidation-reduction process IC 20685892
genes like me logo Genes that share ontologies with HEPHL1: view

No data available for SIGNOR curated interactions for HEPHL1 Gene

Drugs & Compounds for HEPHL1 Gene

(1) Drugs for HEPHL1 Gene - From: HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Copper Approved Pharma 181
genes like me logo Genes that share compounds with HEPHL1: view

Transcripts for HEPHL1 Gene

mRNA/cDNA for HEPHL1 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(3) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for HEPHL1 Gene

Hephaestin-like 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for HEPHL1 Gene

No ASD Table

Relevant External Links for HEPHL1 Gene

GeneLoc Exon Structure for
HEPHL1
ECgene alternative splicing isoforms for
HEPHL1

Expression for HEPHL1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HEPHL1 Gene

mRNA differential expression in normal tissues according to GTEx for HEPHL1 Gene

This gene is overexpressed in Skin - Not Sun Exposed (Suprapubic) (x18.5), Esophagus - Mucosa (x10.1), Vagina (x6.5), and Minor Salivary Gland (x6.2).

Protein differential expression in normal tissues from HIPED for HEPHL1 Gene

This gene is overexpressed in Hair follicle (42.3) and Synovial fluid (25.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for HEPHL1 Gene



NURSA nuclear receptor signaling pathways regulating expression of HEPHL1 Gene:

HEPHL1

SOURCE GeneReport for Unigene cluster for HEPHL1 Gene:

Hs.669645
genes like me logo Genes that share expression patterns with HEPHL1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for HEPHL1 Gene

Orthologs for HEPHL1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for HEPHL1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia HEPHL1 34 35
  • 99.71 (n)
dog
(Canis familiaris)
Mammalia HEPHL1 34 35
  • 89.62 (n)
cow
(Bos Taurus)
Mammalia HEPHL1 34 35
  • 88.9 (n)
mouse
(Mus musculus)
Mammalia Hephl1 34 16 35
  • 85.69 (n)
rat
(Rattus norvegicus)
Mammalia Hephl1 34
  • 84.74 (n)
oppossum
(Monodelphis domestica)
Mammalia HEPHL1 35
  • 82 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia HEPHL1 35
  • 80 (a)
OneToOne
chicken
(Gallus gallus)
Aves HEPHL1 34 35
  • 67.12 (n)
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 65 (a)
OneToMany
-- 35
  • 64 (a)
OneToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia hephl1 34
  • 64.02 (n)
zebrafish
(Danio rerio)
Actinopterygii LOC101886332 34
  • 60.79 (n)
hephl1 35
  • 56 (a)
OneToMany
HEPHL1 (1 of 3) 35
  • 52 (a)
OneToMany
HEPHL1 (3 of 3) 35
  • 50 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 41 (a)
OneToMany
Species where no ortholog for HEPHL1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for HEPHL1 Gene

ENSEMBL:
Gene Tree for HEPHL1 (if available)
TreeFam:
Gene Tree for HEPHL1 (if available)

Paralogs for HEPHL1 Gene

Paralogs for HEPHL1 Gene

(3) SIMAP similar genes for HEPHL1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with HEPHL1: view

Variants for HEPHL1 Gene

Sequence variations from dbSNP and Humsavar for HEPHL1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000055720 -- 94,047,323(+) TAGTC(C/T)CCATT intron-variant
rs1000096570 -- 94,066,043(+) AACAA(A/C)AAAAA intron-variant
rs1000133748 -- 94,105,005(+) CTAAG(A/T)CTGTA intron-variant
rs1000196413 -- 94,052,997(+) AATTG(A/G)AAAGT intron-variant
rs1000213034 -- 94,090,516(+) CTGGT(A/G)GGGAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HEPHL1 Gene

Variant ID Type Subtype PubMed ID
dgv697n106 CNV duplication 24896259
esv3579854 CNV loss 25503493
esv3627304 CNV gain 21293372
esv3627305 CNV loss 21293372
esv3627306 CNV gain 21293372
esv3627307 CNV loss 21293372
nsv1046092 CNV loss 25217958
nsv1049467 CNV loss 25217958
nsv1148684 CNV duplication 26484159
nsv508651 CNV deletion 20534489
nsv523082 CNV gain 19592680

Variation tolerance for HEPHL1 Gene

Residual Variation Intolerance Score: 93.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.44; 63.98% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for HEPHL1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
HEPHL1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for HEPHL1 Gene

Disorders for HEPHL1 Gene

Relevant External Links for HEPHL1

Genetic Association Database (GAD)
HEPHL1
Human Genome Epidemiology (HuGE) Navigator
HEPHL1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HEPHL1

No disorders were found for HEPHL1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for HEPHL1 Gene

Publications for HEPHL1 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 46 64
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64
  3. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie A.G. … Butte N.F. (PLoS ONE 2012) 3 64
  4. Identification of zyklopen, a new member of the vertebrate multicopper ferroxidase family, and characterization in rodents and human cells. (PMID: 20685892) Chen H. … McArdle H.J. (J. Nutr. 2010) 3 64
  5. The full-ORF clone resource of the German cDNA consortium. (PMID: 17974005) Bechtel S. … Schupp I. (BMC Genomics 2007) 4 64

Products for HEPHL1 Gene

Sources for HEPHL1 Gene

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