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Aliases for HEPACAM2 Gene

Aliases for HEPACAM2 Gene

  • HEPACAM Family Member 2 2 3 5
  • Mitotic Kinetics Regulator 3 4
  • MIKI 3 4

External Ids for HEPACAM2 Gene

Previous GeneCards Identifiers for HEPACAM2 Gene

  • GC07M092656
  • GC07M092817
  • GC07M087426

Summaries for HEPACAM2 Gene

Entrez Gene Summary for HEPACAM2 Gene

  • This gene encodes a protein related to the immunoglobulin superfamily that plays a role in mitosis. Knockdown of this gene results in prometaphase arrest, abnormal nuclear morphology and apoptosis. Poly(ADP-ribosylation) of the encoded protein promotes its translocation to centrosomes, which may stimulate centrosome maturation. A chromosomal deletion including this gene may be associated with myeloid leukemia and myelodysplastic syndrome in human patients. [provided by RefSeq, Oct 2016]

GeneCards Summary for HEPACAM2 Gene

HEPACAM2 (HEPACAM Family Member 2) is a Protein Coding gene. Diseases associated with HEPACAM2 include Myelodysplastic Syndrome. An important paralog of this gene is HEPACAM.

UniProtKB/Swiss-Prot for HEPACAM2 Gene

  • Required during prometaphase for centrosome maturation. Following poly-ADP-ribosylation (PARsylation) by TNKS, translocates from the Golgi apparatus to mitotic centrosomes and plays a key role in the formation of robust microtubules for prompt movement of chromosomes: anchors AKAP9/CG-NAP, a scaffold protein of the gamma-tubulin ring complex and promotes centrosome maturation.

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HEPACAM2 Gene

Genomics for HEPACAM2 Gene

Regulatory Elements for HEPACAM2 Gene

Enhancers for HEPACAM2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G093165 1 FANTOM5 ENCODE 10.6 +66.6 66627 1.2 TBP MTA2 CEBPB CEBPG DPF2 TBX21 RELA ARID3A PRDM6 POLR2A HEPACAM2 SAMD9 SAMD9L
GH07G093558 0.7 Ensembl 9.6 -327.2 -327205 1.4 ATF1 NR2F1 MAFG ATF2 JUND CBX8 ZNF316 ATF3 ZNF692 IRF1 MIR489 MIR653 HEPACAM2 CALCR LOC105375400
GH07G093217 0.7 FANTOM5 4.6 +14.4 14357 0.2 GATAD2A TFAP4 NFIA SAP130 ZBTB2 TAL1 NFRKB CEBPB JUNB ARID4B HEPACAM2 SAMD9L
GH07G093231 1.1 ENCODE 0.7 +0.2 226 2.0 PKNOX1 FOXA2 CREB3L1 ARNT WRNIP1 ARID4B SIN3A ZNF2 YY1 ZNF766 SAMD9L FAM133B LOC105375403 VPS50 HEPACAM2
GH07G093228 0.8 ENCODE 0.7 +3.9 3875 0.2 CTCF FOXA2 CEBPG ZNF2 RAD21 FOXK2 SCRT2 ZNF143 SMC3 SCRT1 SAMD9L VPS50 HEPACAM2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around HEPACAM2 on UCSC Golden Path with GeneCards custom track

Promoters for HEPACAM2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000215176 -3 1801 PKNOX1 FOXA2 CREB3L1 ARNT WRNIP1 ARID4B SIN3A ZNF2 YY1 ZNF766

Genomic Location for HEPACAM2 Gene

Chromosome:
7
Start:
93,188,586 bp from pter
End:
93,232,297 bp from pter
Size:
43,712 bases
Orientation:
Minus strand

Genomic View for HEPACAM2 Gene

Genes around HEPACAM2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
HEPACAM2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for HEPACAM2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HEPACAM2 Gene

Proteins for HEPACAM2 Gene

  • Protein details for HEPACAM2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A8MVW5-HECA2_HUMAN
    Recommended name:
    HEPACAM family member 2
    Protein Accession:
    A8MVW5
    Secondary Accessions:
    • B3KTT4
    • B4DPJ1
    • B9EG93
    • E9PDV5
    • Q6UXI0

    Protein attributes for HEPACAM2 Gene

    Size:
    462 amino acids
    Molecular mass:
    51407 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for HEPACAM2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for HEPACAM2 Gene

Post-translational modifications for HEPACAM2 Gene

  • N-glycosylated.
  • Poly-ADP-ribosylated (PARsylated) by tankyrase TNKS during late G2 and prophase, leading to translocation to mitotic centrosomes.
  • Glycosylation at posLast=8585, posLast=129129, posLast=165165, posLast=216216, isoforms=2, 3288, and posLast=320320
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for HEPACAM2 Gene

Domains & Families for HEPACAM2 Gene

Protein Domains for HEPACAM2 Gene

Suggested Antigen Peptide Sequences for HEPACAM2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with HEPACAM2: view

No data available for UniProtKB/Swiss-Prot for HEPACAM2 Gene

Function for HEPACAM2 Gene

Molecular function for HEPACAM2 Gene

UniProtKB/Swiss-Prot Function:
Required during prometaphase for centrosome maturation. Following poly-ADP-ribosylation (PARsylation) by TNKS, translocates from the Golgi apparatus to mitotic centrosomes and plays a key role in the formation of robust microtubules for prompt movement of chromosomes: anchors AKAP9/CG-NAP, a scaffold protein of the gamma-tubulin ring complex and promotes centrosome maturation.

Gene Ontology (GO) - Molecular Function for HEPACAM2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 22864114
genes like me logo Genes that share ontologies with HEPACAM2: view
genes like me logo Genes that share phenotypes with HEPACAM2: view

Animal Model Products

  • Taconic Biosciences Mouse Models for HEPACAM2

CRISPR Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for HEPACAM2 Gene

Localization for HEPACAM2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for HEPACAM2 Gene

Golgi apparatus membrane; Single-pass type I membrane protein. Cytoplasm, cytoskeleton, spindle. Cytoplasm, cytoskeleton, microtubule organizing center, centrosome. Midbody. Note=In interphase, localizes to the Golgi apparatus. Localizes to centrosomes and spindles during prophase, prometaphase, and metaphase of mitosis, and to midbodies at telophase. Translocation to mitotic centrosomes is the result of poly-ADP-ribosylation (PARsylation). {ECO:0000269 PubMed:19358830, ECO:0000269 PubMed:22864114}.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for HEPACAM2 gene
Compartment Confidence
cytoskeleton 5
golgi apparatus 5
plasma membrane 3
extracellular 1
peroxisome 1
nucleus 1
cytosol 1

Gene Ontology (GO) - Cellular Components for HEPACAM2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000139 Golgi membrane IEA --
GO:0005737 cytoplasm IEA --
GO:0005794 Golgi apparatus IEA,IDA 22864114
GO:0005813 centrosome IDA 22864114
GO:0005815 microtubule organizing center IEA --
genes like me logo Genes that share ontologies with HEPACAM2: view

Pathways & Interactions for HEPACAM2 Gene

SuperPathways for HEPACAM2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for HEPACAM2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007049 cell cycle IEA --
GO:0007067 mitotic nuclear division IEA --
GO:0007098 centrosome cycle IMP 22864114
GO:0051297 centrosome organization IMP --
GO:0051301 cell division IEA --
genes like me logo Genes that share ontologies with HEPACAM2: view

No data available for Pathways by source and SIGNOR curated interactions for HEPACAM2 Gene

Transcripts for HEPACAM2 Gene

Unigene Clusters for HEPACAM2 Gene

HEPACAM family member 2:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HEPACAM2 Gene

ExUns: 1 ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10
SP1: - -
SP2: -
SP3:

Relevant External Links for HEPACAM2 Gene

GeneLoc Exon Structure for
HEPACAM2
ECgene alternative splicing isoforms for
HEPACAM2

Expression for HEPACAM2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for HEPACAM2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for HEPACAM2 Gene

This gene is overexpressed in Colon - Transverse (x22.6), Small Intestine - Terminal Ileum (x9.0), Pituitary (x5.7), and Kidney - Cortex (x5.0).

NURSA nuclear receptor signaling pathways regulating expression of HEPACAM2 Gene:

HEPACAM2

SOURCE GeneReport for Unigene cluster for HEPACAM2 Gene:

Hs.443169

mRNA Expression by UniProt/SwissProt for HEPACAM2 Gene:

A8MVW5-HECA2_HUMAN
Tissue specificity: Widely expressed.

Evidence on tissue expression from TISSUES for HEPACAM2 Gene

  • Kidney(4.2)
genes like me logo Genes that share expression patterns with HEPACAM2: view

Primer Products

No data available for Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for HEPACAM2 Gene

Orthologs for HEPACAM2 Gene

This gene was present in the common ancestor of chordates.

Orthologs for HEPACAM2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia HEPACAM2 34 35
  • 99.71 (n)
dog
(Canis familiaris)
Mammalia HEPACAM2 34 35
  • 89.58 (n)
cow
(Bos Taurus)
Mammalia HEPACAM2 34 35
  • 88.99 (n)
mouse
(Mus musculus)
Mammalia Hepacam2 34 16 35
  • 85.28 (n)
rat
(Rattus norvegicus)
Mammalia Hepacam2 34
  • 84.05 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia HEPACAM2 35
  • 57 (a)
OneToOne
chicken
(Gallus gallus)
Aves HEPACAM2 34 35
  • 71.51 (n)
lizard
(Anolis carolinensis)
Reptilia HEPACAM2 35
  • 62 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia hepacam2 34
  • 65.5 (n)
zebrafish
(Danio rerio)
Actinopterygii LOC558612 34
  • 48.53 (n)
hepacam2 35
  • 35 (a)
OneToOne
Species where no ortholog for HEPACAM2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for HEPACAM2 Gene

ENSEMBL:
Gene Tree for HEPACAM2 (if available)
TreeFam:
Gene Tree for HEPACAM2 (if available)

Paralogs for HEPACAM2 Gene

Paralogs for HEPACAM2 Gene

genes like me logo Genes that share paralogs with HEPACAM2: view

Variants for HEPACAM2 Gene

Sequence variations from dbSNP and Humsavar for HEPACAM2 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
VAR_042976 A breast cancer sample
rs193921119 Uncertain significance 93,219,492(-) GAAAT(A/G)TGGCT intron-variant, reference, missense
rs1000022155 -- 93,222,801(+) GGTAG(A/C)AGCTA intron-variant
rs1000176690 -- 93,195,105(+) TTGTC(-/A)AAAGA intron-variant
rs1000206833 -- 93,197,128(+) CTGTT(A/G)TATTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for HEPACAM2 Gene

Variant ID Type Subtype PubMed ID
esv2581618 CNV deletion 19546169
nsv528267 CNV loss 19592680

Variation tolerance for HEPACAM2 Gene

Residual Variation Intolerance Score: 52.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.93; 49.02% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for HEPACAM2 Gene

Human Gene Mutation Database (HGMD)
HEPACAM2
SNPedia medical, phenotypic, and genealogical associations of SNPs for
HEPACAM2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for HEPACAM2 Gene

Disorders for HEPACAM2 Gene

MalaCards: The human disease database

(1) MalaCards diseases for HEPACAM2 Gene - From: GeneCards

Disorder Aliases PubMed IDs
myelodysplastic syndrome
  • myelodysplastic syndrome, somatic
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for HEPACAM2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HEPACAM2
genes like me logo Genes that share disorders with HEPACAM2: view

No data available for UniProtKB/Swiss-Prot and Genatlas for HEPACAM2 Gene

Publications for HEPACAM2 Gene

  1. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark H.F. … Gray A.M. (Genome Res. 2003) 2 3 4 64
  2. Poly-ADP ribosylation of Miki by tankyrase-1 promotes centrosome maturation. (PMID: 22864114) Ozaki Y. … Inaba T. (Mol. Cell 2012) 3 4 64
  3. Identification of a common microdeletion cluster in 7q21.3 subband among patients with myeloid leukemia and myelodysplastic syndrome. (PMID: 19358830) Asou H. … Inaba T. (Biochem. Biophys. Res. Commun. 2009) 3 4 64
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  5. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64

Products for HEPACAM2 Gene

Sources for HEPACAM2 Gene

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